Wall clock time and date at job start Tue Mar 31 2020 19:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47341 * 2 1 4 4 C 1.50701 * 109.46888 * 180.02562 * 3 2 1 5 5 N 1.30448 * 125.98647 * 270.16750 * 4 3 2 6 6 N 1.39935 * 108.89828 * 180.26957 * 5 4 3 7 7 H 0.96992 * 125.75711 * 179.74007 * 6 5 4 8 8 C 1.34259 * 108.48809 * 359.73341 * 6 5 4 9 9 C 1.38039 * 107.42050 * 0.02562 * 8 6 5 10 10 C 1.47427 * 126.41615 * 179.97438 * 9 8 6 11 11 O 1.21605 * 119.99717 * 139.72970 * 10 9 8 12 12 N 1.34773 * 120.00272 * 319.73445 * 10 9 8 13 13 C 1.46922 * 120.63146 * 354.50280 * 12 10 9 14 14 C 1.53193 * 108.78177 * 233.59045 * 13 12 10 15 15 C 1.53041 * 109.30620 * 305.36542 * 14 13 12 16 16 H 1.09002 * 109.46322 * 301.34094 * 15 14 13 17 17 N 1.46504 * 109.45653 * 181.38142 * 15 14 13 18 18 C 1.36942 * 119.99975 * 84.93115 * 17 15 14 19 19 H 1.08007 * 119.99788 * 0.02562 * 18 17 15 20 20 C 1.38804 * 120.00299 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00279 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99959 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46901 * 89.99670 * 22 20 18 24 24 H 1.48500 * 109.47170 * 209.99935 * 22 20 18 25 25 H 1.48502 * 109.47120 * 329.99882 * 22 20 18 26 26 C 1.53040 * 109.54148 * 61.36623 * 15 14 13 27 27 H 1.08999 * 109.52642 * 58.59756 * 26 15 14 28 28 C 1.52995 * 109.49999 * 178.67960 * 26 15 14 29 29 C 1.52995 * 109.47549 * 184.83474 * 28 26 15 30 30 C 1.46926 * 120.63254 * 174.48339 * 12 10 9 31 31 H 1.09001 * 109.46427 * 299.99996 * 1 2 3 32 32 H 1.08999 * 109.47336 * 59.99655 * 1 2 3 33 33 H 1.08996 * 109.46919 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.46865 * 239.99942 * 2 1 3 35 35 H 1.08999 * 109.47336 * 120.00345 * 2 1 3 36 36 H 1.08990 * 109.46995 * 60.00294 * 3 2 1 37 37 H 1.09004 * 109.46530 * 300.00173 * 3 2 1 38 38 H 1.08001 * 126.28844 * 180.02562 * 8 6 5 39 39 H 1.09007 * 109.58646 * 353.38145 * 13 12 10 40 40 H 1.09000 * 109.58676 * 113.79857 * 13 12 10 41 41 H 1.09000 * 109.49490 * 65.31408 * 14 13 12 42 42 H 1.08993 * 109.49981 * 185.38006 * 14 13 12 43 43 H 0.96995 * 120.00348 * 264.93155 * 17 15 14 44 44 H 0.96997 * 120.00055 * 179.97438 * 21 20 18 45 45 H 1.09007 * 109.46948 * 64.83337 * 28 26 15 46 46 H 1.09006 * 109.47247 * 304.83885 * 28 26 15 47 47 H 1.08998 * 109.47890 * 179.97438 * 29 28 26 48 48 H 1.09007 * 109.47108 * 59.99961 * 29 28 26 49 49 H 1.09006 * 109.47181 * 300.00452 * 29 28 26 50 50 H 1.08998 * 109.58684 * 6.62830 * 30 12 10 51 51 H 1.08998 * 109.70829 * 246.26884 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.3140 1.4391 1.0546 6 7 5.6514 1.4465 0.6428 7 1 6.4247 1.4495 1.2283 8 6 5.6837 1.4485 -0.6994 9 6 4.3769 1.4430 -1.1442 10 6 3.9307 1.4435 -2.5493 11 8 2.9841 0.7588 -2.8867 12 7 4.5719 2.2026 -3.4598 13 6 5.6385 3.1251 -3.0476 14 6 5.3128 4.5246 -3.5786 15 6 5.0933 4.4533 -5.0915 16 1 5.9898 4.0595 -5.5704 17 7 4.8140 5.7955 -5.6079 18 6 5.8476 6.6348 -5.9282 19 1 6.8688 6.3069 -5.8005 20 6 5.5830 7.9063 -6.4179 21 7 6.5765 8.7131 -6.7253 22 14 3.8168 8.4730 -6.6395 23 1 3.3462 9.1259 -5.3915 24 1 3.7451 9.4420 -7.7626 25 1 2.9552 7.3017 -6.9407 26 6 3.9079 3.5338 -5.3941 27 1 3.0159 3.9133 -4.8956 28 6 3.6687 3.4891 -6.9046 29 6 2.4117 2.6677 -7.1979 30 6 4.2179 2.1231 -4.8835 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.6768 1.9563 0.8899 37 1 1.6767 1.9563 -0.8900 38 1 6.5693 1.4535 -1.3175 39 1 5.6982 3.1518 -1.9595 40 1 6.5905 2.7903 -3.4596 41 1 4.4079 4.8950 -3.0968 42 1 6.1420 5.1980 -3.3621 43 1 3.8969 6.0898 -5.7230 44 1 6.3916 9.6015 -7.0679 45 1 4.5264 3.0285 -7.3948 46 1 3.5362 4.5033 -7.2816 47 1 2.2410 2.6362 -8.2739 48 1 1.5540 3.1283 -6.7077 49 1 2.5442 1.6535 -6.8208 50 1 3.3400 1.4888 -5.0069 51 1 5.0523 1.7057 -5.4470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037872297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:07 Heat of formation + Delta-G solvation = 33.120576 kcal Electronic energy + Delta-G solvation = -30122.466381 eV Core-core repulsion = 26251.000619 eV Total energy + Delta-G solvation = -3871.465762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.70770 -39.75587 -37.71255 -35.43520 -34.74551 -33.90691 -31.80137 -31.77150 -30.83353 -29.89148 -28.62833 -27.27357 -25.39099 -23.97987 -23.18959 -22.12280 -21.86654 -20.81881 -20.51037 -19.78706 -19.33839 -17.84452 -17.46051 -16.68057 -15.87390 -15.44503 -15.16851 -14.95024 -14.61701 -14.53533 -14.31423 -13.92225 -13.74307 -13.61213 -13.36870 -13.26711 -13.14277 -12.74652 -12.67489 -12.35508 -12.19523 -11.95299 -11.82032 -11.63832 -11.40848 -11.37851 -11.15710 -11.03729 -11.00482 -10.78383 -10.63941 -10.40302 -10.31512 -10.20946 -9.79614 -9.74588 -9.69625 -9.59339 -8.99089 -8.87682 -8.45673 -7.28920 -5.80321 -3.15479 1.37968 2.05358 2.46254 3.00730 3.30515 3.35529 3.39094 3.44121 4.26041 4.44336 4.56553 4.79672 4.84958 4.97930 4.99990 5.07020 5.13024 5.18368 5.22768 5.26844 5.36093 5.42942 5.47645 5.51685 5.59124 5.60645 5.63303 5.68233 5.74275 5.81296 5.91270 5.93209 6.02653 6.04888 6.11613 6.15157 6.22755 6.26229 6.28786 6.31093 6.35276 6.49156 6.58968 6.71520 6.81812 6.86472 6.95378 7.32611 7.54416 7.95407 8.30465 8.38996 9.17497 9.90470 10.10517 11.38020 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.003246 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.365092 B = 8624.785100 C = 9330.909072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.040 4.040 4 C 0.133 3.867 5 N -0.297 5.297 6 N -0.463 5.463 7 H 0.443 0.557 8 C 0.100 3.900 9 C -0.276 4.276 10 C 0.593 3.407 11 O -0.542 6.542 12 N -0.603 5.603 13 C 0.102 3.898 14 C -0.151 4.151 15 C 0.189 3.811 16 H 0.056 0.944 17 N -0.745 5.745 18 C -0.241 4.241 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.881 3.119 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.276 1.276 26 C -0.108 4.108 27 H 0.069 0.931 28 C -0.113 4.113 29 C -0.153 4.153 30 C 0.122 3.878 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.187 0.813 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.050 0.950 48 H 0.050 0.950 49 H 0.052 0.948 50 H 0.092 0.908 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 -18.098 12.283 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.079 4.079 4 C -0.035 4.035 5 N -0.120 5.120 6 N -0.168 5.168 7 H 0.288 0.712 8 C -0.052 4.052 9 C -0.291 4.291 10 C 0.381 3.619 11 O -0.420 6.420 12 N -0.336 5.336 13 C -0.021 4.021 14 C -0.192 4.192 15 C 0.079 3.921 16 H 0.074 0.926 17 N -0.387 5.387 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.582 5.582 22 Si 0.712 3.288 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.202 1.202 26 C -0.128 4.128 27 H 0.088 0.912 28 C -0.151 4.151 29 C -0.211 4.211 30 C -0.001 4.001 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.204 0.796 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.111 0.889 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.573 -18.340 13.305 23.115 hybrid contribution -0.447 0.825 -0.735 1.192 sum -5.020 -17.515 12.570 22.135 Atomic orbital electron populations 1.21737 0.95475 1.01629 1.01807 1.21421 0.95805 0.95277 1.02720 1.20099 0.85508 0.98786 1.03492 1.22382 0.96889 0.95551 0.88716 1.77131 0.86268 1.26184 1.22392 1.46087 1.07764 1.57529 1.05428 0.71211 1.23194 0.99009 0.97473 0.85487 1.20245 0.92272 1.21956 0.94672 1.17290 0.81909 0.79128 0.83550 1.90738 1.27832 1.43012 1.80377 1.48007 1.37382 1.40637 1.07558 1.22028 0.89644 0.90324 1.00135 1.22626 1.02558 0.94310 0.99682 1.20159 0.95267 0.85573 0.91081 0.92597 1.42782 1.05244 1.12357 1.78316 1.19040 0.88491 0.93829 1.35735 0.89246 1.24649 0.96532 0.96594 1.01248 1.69693 1.29586 1.08553 1.50369 0.86601 0.86200 0.78382 0.77638 1.21193 1.21809 1.20218 1.21825 0.99816 0.94819 0.96352 0.91244 1.21465 0.97406 1.01550 0.94722 1.21849 0.98312 1.00018 1.00884 1.21702 1.01464 0.97592 0.79293 0.92948 0.92384 0.92718 0.90520 0.92341 0.90429 0.89521 0.79592 0.90155 0.91479 0.92295 0.90240 0.80609 0.93080 0.91988 0.90502 0.93118 0.93083 0.92887 0.88949 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.11 -1.20 5.92 -26.73 -0.16 -1.36 16 3 C -0.04 -0.45 5.30 -27.88 -0.15 -0.59 16 4 C 0.13 1.64 6.51 -82.02 -0.53 1.10 16 5 N -0.30 -3.49 12.63 33.90 0.43 -3.06 16 6 N -0.46 -3.89 7.29 30.85 0.22 -3.67 16 7 H 0.44 2.09 8.96 -182.73 -1.64 0.45 16 8 C 0.10 0.88 9.63 -16.56 -0.16 0.72 16 9 C -0.28 -3.35 5.22 -105.07 -0.55 -3.90 16 10 C 0.59 8.30 7.33 -12.52 -0.09 8.21 16 11 O -0.54 -8.91 15.49 5.27 0.08 -8.83 16 12 N -0.60 -7.86 2.97 -174.03 -0.52 -8.38 16 13 C 0.10 1.21 5.47 -3.71 -0.02 1.19 16 14 C -0.15 -2.35 5.66 -26.61 -0.15 -2.50 16 15 C 0.19 3.30 2.19 -67.89 -0.15 3.15 16 16 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 17 N -0.75 -16.46 4.14 -53.38 -0.22 -16.68 16 18 C -0.24 -6.42 10.41 -15.06 -0.16 -6.58 16 19 H 0.09 2.55 8.06 -52.48 -0.42 2.12 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 21 N -0.93 -28.61 13.97 55.49 0.78 -27.84 16 22 Si 0.88 21.68 27.74 -169.99 -4.71 16.97 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 26 C -0.11 -1.63 1.93 -90.50 -0.17 -1.80 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 C -0.11 -1.69 5.31 -26.74 -0.14 -1.83 16 29 C -0.15 -1.95 9.67 37.16 0.36 -1.59 16 30 C 0.12 1.63 5.33 -3.71 -0.02 1.61 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.95 7.66 -51.93 -0.40 0.55 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.06 7.82 -51.93 -0.41 0.66 16 38 H 0.19 1.03 7.32 -52.49 -0.38 0.65 16 39 H 0.08 0.84 4.79 -51.93 -0.25 0.59 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.36 8.07 5.37 -40.82 -0.22 7.85 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.08 1.35 7.22 -51.93 -0.37 0.97 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 50 H 0.09 1.29 5.71 -51.93 -0.30 0.99 16 51 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 398.10 15.07 6.00 6.00 Total: -1.00 -33.18 398.10 -9.58 -42.77 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -9.82 Total: 7.79 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.82 Total: -5.08 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.69 Total: -59.62 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.18 -9.58 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037872297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.889 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds