Wall clock time and date at job start Tue Mar 31 2020 19:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47341 * 2 1 4 4 C 1.50701 * 109.46888 * 180.02562 * 3 2 1 5 5 N 1.30448 * 125.98647 * 270.16750 * 4 3 2 6 6 N 1.39935 * 108.89828 * 180.26957 * 5 4 3 7 7 H 0.96992 * 125.75711 * 179.74007 * 6 5 4 8 8 C 1.34259 * 108.48809 * 359.73341 * 6 5 4 9 9 C 1.38039 * 107.42050 * 0.02562 * 8 6 5 10 10 C 1.47427 * 126.41615 * 179.97438 * 9 8 6 11 11 O 1.21605 * 119.99717 * 139.72970 * 10 9 8 12 12 N 1.34773 * 120.00272 * 319.73445 * 10 9 8 13 13 C 1.46922 * 120.63146 * 354.50280 * 12 10 9 14 14 C 1.53193 * 108.78177 * 233.59045 * 13 12 10 15 15 C 1.53041 * 109.30620 * 305.36542 * 14 13 12 16 16 H 1.09002 * 109.46322 * 301.34094 * 15 14 13 17 17 N 1.46504 * 109.45653 * 181.38142 * 15 14 13 18 18 C 1.36942 * 119.99975 * 84.93115 * 17 15 14 19 19 H 1.08007 * 119.99788 * 0.02562 * 18 17 15 20 20 C 1.38804 * 120.00299 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00279 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99959 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46901 * 89.99670 * 22 20 18 24 24 H 1.48500 * 109.47170 * 209.99935 * 22 20 18 25 25 H 1.48502 * 109.47120 * 329.99882 * 22 20 18 26 26 C 1.53040 * 109.54148 * 61.36623 * 15 14 13 27 27 H 1.08999 * 109.52642 * 58.59756 * 26 15 14 28 28 C 1.52995 * 109.49999 * 178.67960 * 26 15 14 29 29 C 1.52995 * 109.47549 * 184.83474 * 28 26 15 30 30 C 1.46926 * 120.63254 * 174.48339 * 12 10 9 31 31 H 1.09001 * 109.46427 * 299.99996 * 1 2 3 32 32 H 1.08999 * 109.47336 * 59.99655 * 1 2 3 33 33 H 1.08996 * 109.46919 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.46865 * 239.99942 * 2 1 3 35 35 H 1.08999 * 109.47336 * 120.00345 * 2 1 3 36 36 H 1.08990 * 109.46995 * 60.00294 * 3 2 1 37 37 H 1.09004 * 109.46530 * 300.00173 * 3 2 1 38 38 H 1.08001 * 126.28844 * 180.02562 * 8 6 5 39 39 H 1.09007 * 109.58646 * 353.38145 * 13 12 10 40 40 H 1.09000 * 109.58676 * 113.79857 * 13 12 10 41 41 H 1.09000 * 109.49490 * 65.31408 * 14 13 12 42 42 H 1.08993 * 109.49981 * 185.38006 * 14 13 12 43 43 H 0.96995 * 120.00348 * 264.93155 * 17 15 14 44 44 H 0.96997 * 120.00055 * 179.97438 * 21 20 18 45 45 H 1.09007 * 109.46948 * 64.83337 * 28 26 15 46 46 H 1.09006 * 109.47247 * 304.83885 * 28 26 15 47 47 H 1.08998 * 109.47890 * 179.97438 * 29 28 26 48 48 H 1.09007 * 109.47108 * 59.99961 * 29 28 26 49 49 H 1.09006 * 109.47181 * 300.00452 * 29 28 26 50 50 H 1.08998 * 109.58684 * 6.62830 * 30 12 10 51 51 H 1.08998 * 109.70829 * 246.26884 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.3140 1.4391 1.0546 6 7 5.6514 1.4465 0.6428 7 1 6.4247 1.4495 1.2283 8 6 5.6837 1.4485 -0.6994 9 6 4.3769 1.4430 -1.1442 10 6 3.9307 1.4435 -2.5493 11 8 2.9841 0.7588 -2.8867 12 7 4.5719 2.2026 -3.4598 13 6 5.6385 3.1251 -3.0476 14 6 5.3128 4.5246 -3.5786 15 6 5.0933 4.4533 -5.0915 16 1 5.9898 4.0595 -5.5704 17 7 4.8140 5.7955 -5.6079 18 6 5.8476 6.6348 -5.9282 19 1 6.8688 6.3069 -5.8005 20 6 5.5830 7.9063 -6.4179 21 7 6.5765 8.7131 -6.7253 22 14 3.8168 8.4730 -6.6395 23 1 3.3462 9.1259 -5.3915 24 1 3.7451 9.4420 -7.7626 25 1 2.9552 7.3017 -6.9407 26 6 3.9079 3.5338 -5.3941 27 1 3.0159 3.9133 -4.8956 28 6 3.6687 3.4891 -6.9046 29 6 2.4117 2.6677 -7.1979 30 6 4.2179 2.1231 -4.8835 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.6768 1.9563 0.8899 37 1 1.6767 1.9563 -0.8900 38 1 6.5693 1.4535 -1.3175 39 1 5.6982 3.1518 -1.9595 40 1 6.5905 2.7903 -3.4596 41 1 4.4079 4.8950 -3.0968 42 1 6.1420 5.1980 -3.3621 43 1 3.8969 6.0898 -5.7230 44 1 6.3916 9.6015 -7.0679 45 1 4.5264 3.0285 -7.3948 46 1 3.5362 4.5033 -7.2816 47 1 2.2410 2.6362 -8.2739 48 1 1.5540 3.1283 -6.7077 49 1 2.5442 1.6535 -6.8208 50 1 3.3400 1.4888 -5.0069 51 1 5.0523 1.7057 -5.4470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037872297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:05 Heat of formation + Delta-G solvation = 11.885839 kcal Electronic energy + Delta-G solvation = -30123.387188 eV Core-core repulsion = 26251.000619 eV Total energy + Delta-G solvation = -3872.386569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.53688 -40.86283 -38.95779 -36.41154 -35.99583 -35.33545 -33.58050 -32.56975 -31.80600 -31.38910 -29.76613 -28.08446 -26.76161 -25.17079 -24.59488 -23.14630 -22.85151 -22.11826 -21.49678 -21.04455 -20.24467 -19.50107 -18.58780 -17.75933 -16.94751 -16.65003 -16.35437 -16.07823 -15.91781 -15.58472 -15.36722 -15.16854 -15.05346 -14.66920 -14.54700 -14.51925 -14.30266 -13.99902 -13.89472 -13.71860 -13.26138 -13.08237 -12.95951 -12.88798 -12.65660 -12.52737 -12.44011 -12.17394 -12.14914 -12.00802 -11.94801 -11.83436 -11.60190 -11.52091 -11.48425 -11.09907 -10.94544 -10.80772 -10.48949 -9.79914 -9.54037 -9.22636 -7.98734 -5.29688 0.62443 1.13526 1.38858 1.39415 1.46845 1.76576 2.02719 2.32176 2.50180 3.33446 3.41341 3.58889 3.71736 3.74816 3.92410 4.05752 4.09147 4.11239 4.19832 4.27208 4.33904 4.35863 4.41133 4.48072 4.51327 4.61416 4.66358 4.72895 4.82141 4.83241 4.83779 4.85428 4.92420 4.97806 5.04620 5.07896 5.14121 5.18816 5.29789 5.35157 5.37963 5.41433 5.45383 5.49371 5.55037 5.70358 5.82533 6.25937 6.27997 6.45982 6.58641 7.12088 7.26552 7.89780 8.07418 9.22859 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.003246 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.365092 B = 8624.785100 C = 9330.909072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.039 4.039 4 C 0.119 3.881 5 N -0.319 5.319 6 N -0.447 5.447 7 H 0.461 0.539 8 C 0.126 3.874 9 C -0.311 4.311 10 C 0.594 3.406 11 O -0.573 6.573 12 N -0.603 5.603 13 C 0.111 3.889 14 C -0.144 4.144 15 C 0.183 3.817 16 H 0.053 0.947 17 N -0.748 5.748 18 C -0.213 4.213 19 H 0.064 0.936 20 C -0.062 4.062 21 N -0.984 5.984 22 Si 0.943 3.057 23 H -0.285 1.285 24 H -0.300 1.300 25 H -0.254 1.254 26 C -0.097 4.097 27 H 0.057 0.943 28 C -0.112 4.112 29 C -0.147 4.147 30 C 0.128 3.872 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.226 0.774 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.361 0.639 44 H 0.255 0.745 45 H 0.067 0.933 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.046 0.954 49 H 0.065 0.935 50 H 0.089 0.911 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.415 -20.008 13.426 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.079 4.079 4 C -0.048 4.048 5 N -0.142 5.142 6 N -0.153 5.153 7 H 0.309 0.691 8 C -0.028 4.028 9 C -0.326 4.326 10 C 0.384 3.616 11 O -0.453 6.453 12 N -0.334 5.334 13 C -0.012 4.012 14 C -0.184 4.184 15 C 0.075 3.925 16 H 0.071 0.929 17 N -0.390 5.390 18 C -0.344 4.344 19 H 0.082 0.918 20 C -0.253 4.253 21 N -0.636 5.636 22 Si 0.771 3.229 23 H -0.212 1.212 24 H -0.227 1.227 25 H -0.179 1.179 26 C -0.117 4.117 27 H 0.075 0.925 28 C -0.150 4.150 29 C -0.204 4.204 30 C 0.005 3.995 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.242 0.758 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.194 0.806 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.107 0.893 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.651 -20.307 14.501 25.382 hybrid contribution -0.324 1.339 -1.033 1.722 sum -4.974 -18.968 13.468 23.789 Atomic orbital electron populations 1.21721 0.94312 1.02297 1.02026 1.21328 0.96782 0.94656 1.01686 1.20080 0.85662 0.99041 1.03076 1.22516 0.97306 0.95886 0.89139 1.77077 0.87609 1.26960 1.22556 1.46128 1.07429 1.55952 1.05816 0.69105 1.23669 0.98933 0.94515 0.85647 1.20222 0.93804 1.24938 0.93598 1.17538 0.81298 0.78568 0.84234 1.90719 1.29206 1.44368 1.80978 1.48020 1.37532 1.40565 1.07294 1.22047 0.90188 0.87575 1.01356 1.22446 1.01389 0.96717 0.97894 1.20412 0.96245 0.83702 0.92131 0.92885 1.42831 1.04105 1.13586 1.78522 1.19017 0.88529 0.93915 1.32989 0.91756 1.25338 1.00267 0.97177 1.02562 1.69854 1.31814 1.08971 1.52933 0.85589 0.81976 0.78250 0.77043 1.21168 1.22678 1.17918 1.21688 0.98003 0.95386 0.96603 0.92498 1.21419 0.98862 1.00334 0.94363 1.21790 0.96882 1.00132 1.01616 1.21627 1.02141 0.95923 0.79812 0.91735 0.93122 0.91842 0.92703 0.92025 0.89555 0.91072 0.75807 0.88157 0.88789 0.93614 0.91687 0.80643 0.93616 0.91381 0.93360 0.92120 0.93468 0.91643 0.89265 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.91 71.98 0.71 -1.80 16 2 C -0.11 -2.20 5.92 30.60 0.18 -2.02 16 3 C -0.04 -0.88 5.30 29.85 0.16 -0.72 16 4 C 0.12 2.79 6.51 43.51 0.28 3.08 16 5 N -0.32 -6.87 12.63 -46.68 -0.59 -7.46 16 6 N -0.45 -6.08 7.29 -56.32 -0.41 -6.49 16 7 H 0.46 2.69 8.96 -213.44 -1.91 0.78 16 8 C 0.13 1.75 9.63 84.27 0.81 2.56 16 9 C -0.31 -6.89 5.22 -20.15 -0.11 -6.99 16 10 C 0.59 15.65 7.33 86.66 0.64 16.29 16 11 O -0.57 -18.48 15.49 -4.05 -0.06 -18.54 16 12 N -0.60 -14.28 2.97 -822.78 -2.45 -16.73 16 13 C 0.11 2.30 5.47 86.36 0.47 2.77 16 14 C -0.14 -4.28 5.66 30.67 0.17 -4.10 16 15 C 0.18 6.21 2.19 45.02 0.10 6.31 16 16 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 17 N -0.75 -32.80 4.14 -322.80 -1.34 -34.14 16 18 C -0.21 -11.48 10.41 84.03 0.87 -10.60 16 19 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 20 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 21 N -0.98 -61.86 13.97 21.65 0.30 -61.56 16 22 Si 0.94 45.28 27.74 68.60 1.90 47.19 16 23 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 25 H -0.25 -11.13 6.52 99.48 0.65 -10.49 16 26 C -0.10 -2.79 1.93 -10.72 -0.02 -2.81 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 C -0.11 -3.18 5.31 30.59 0.16 -3.02 16 29 C -0.15 -3.48 9.67 71.98 0.70 -2.79 16 30 C 0.13 3.13 5.33 86.36 0.46 3.59 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 34 H 0.05 1.38 7.66 -2.38 -0.02 1.36 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.78 7.82 -2.39 -0.02 1.76 16 38 H 0.23 1.27 7.32 -2.91 -0.02 1.25 16 39 H 0.10 1.72 4.79 -2.38 -0.01 1.71 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.36 15.86 5.37 -92.71 -0.50 15.36 16 44 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 46 H 0.05 1.65 7.22 -2.38 -0.02 1.64 16 47 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 49 H 0.06 1.39 6.70 -2.38 -0.02 1.38 16 50 H 0.09 2.32 5.71 -2.39 -0.01 2.31 16 51 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -74.06 398.10 1.89 -72.17 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -1.53 Total: 28.93 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 6.06 Total: -3.37 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -4.48 Total: -126.37 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.06 Total: -18.54 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.19 kcal Total: -74.06 1.89 -72.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037872297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.055 kcal (2) G-P(sol) polarization free energy of solvation -74.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds