Wall clock time and date at job start Tue Mar 31 2020 19:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46976 * 2 1 4 4 C 1.50700 * 109.47090 * 179.97438 * 3 2 1 5 5 C 1.35368 * 126.38407 * 84.99900 * 4 3 2 6 6 C 1.41495 * 105.50517 * 179.97438 * 5 4 3 7 7 C 1.47703 * 126.52252 * 179.97438 * 6 5 4 8 8 O 1.21573 * 119.99805 * 7.08553 * 7 6 5 9 9 N 1.34777 * 120.00723 * 187.07706 * 7 6 5 10 10 C 1.46929 * 120.62551 * 7.00395 * 9 7 6 11 11 C 1.53184 * 108.77586 * 126.36428 * 10 9 7 12 12 C 1.53043 * 109.31380 * 54.63832 * 11 10 9 13 13 H 1.09003 * 109.46013 * 178.62899 * 12 11 10 14 14 N 1.46495 * 109.46360 * 58.64845 * 12 11 10 15 15 C 1.36945 * 119.99663 * 85.00126 * 14 12 11 16 16 H 1.07996 * 119.99797 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99585 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00328 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99482 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47338 * 60.00379 * 19 17 15 21 21 H 1.48502 * 109.47182 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47419 * 300.00267 * 19 17 15 23 23 C 1.53044 * 109.53462 * 298.62998 * 12 11 10 24 24 H 1.09001 * 109.49778 * 301.38919 * 23 12 11 25 25 C 1.52995 * 109.49859 * 181.31571 * 23 12 11 26 26 C 1.52997 * 109.46972 * 175.00075 * 25 23 12 27 27 C 1.46926 * 120.63446 * 186.71937 * 9 7 6 28 28 N 1.31810 * 106.96230 * 0.02562 * 6 5 4 29 29 N 1.28470 * 110.07242 * 359.71566 * 28 6 5 30 30 H 0.97004 * 124.88555 * 180.29451 * 29 28 6 31 31 H 1.08999 * 109.47099 * 60.00054 * 1 2 3 32 32 H 1.08995 * 109.46655 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46852 * 299.99911 * 1 2 3 34 34 H 1.08993 * 109.47363 * 240.00185 * 2 1 3 35 35 H 1.09004 * 109.46845 * 119.99542 * 2 1 3 36 36 H 1.08999 * 109.47162 * 299.99907 * 3 2 1 37 37 H 1.09003 * 109.46852 * 59.99983 * 3 2 1 38 38 H 1.07999 * 127.24523 * 359.97438 * 5 4 3 39 39 H 1.09005 * 109.58602 * 246.15347 * 10 9 7 40 40 H 1.09005 * 109.58823 * 6.57251 * 10 9 7 41 41 H 1.09008 * 109.49657 * 174.58531 * 11 10 9 42 42 H 1.08998 * 109.50157 * 294.64712 * 11 10 9 43 43 H 0.96994 * 120.00299 * 265.00893 * 14 12 11 44 44 H 0.97001 * 119.99897 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.47286 * 295.00069 * 25 23 12 46 46 H 1.09006 * 109.47061 * 55.00443 * 25 23 12 47 47 H 1.09004 * 109.47521 * 299.99831 * 26 25 23 48 48 H 1.08995 * 109.47374 * 60.00251 * 26 25 23 49 49 H 1.09010 * 109.47166 * 180.02562 * 26 25 23 50 50 H 1.09002 * 109.58514 * 353.42054 * 27 9 7 51 51 H 1.08993 * 109.58475 * 113.84805 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.3505 1.3474 -1.0847 6 6 5.6723 1.3921 -0.5818 7 6 6.9170 1.3224 -1.3740 8 8 6.8667 1.3454 -2.5884 9 7 8.1086 1.2333 -0.7506 10 6 8.1798 1.0506 0.7056 11 6 9.0517 -0.1723 1.0070 12 6 10.4126 -0.0035 0.3276 13 1 11.0437 -0.8611 0.5606 14 7 11.0530 1.2206 0.8150 15 6 11.7817 1.1972 1.9742 16 1 11.8845 0.2763 2.5289 17 6 12.3890 2.3570 2.4357 18 7 12.2641 3.4792 1.7595 19 14 13.3835 2.3249 4.0167 20 1 14.5066 1.3636 3.8756 21 1 13.9235 3.6811 4.2894 22 1 12.5106 1.9046 5.1422 23 6 10.2199 0.0905 -1.1878 24 1 9.7215 -0.8096 -1.5477 25 6 11.5833 0.2263 -1.8685 26 6 11.4004 0.1949 -3.3872 27 6 9.3610 1.3108 -1.5149 28 7 5.5817 1.5067 0.7282 29 7 4.3476 1.5432 1.0833 30 1 4.0358 1.6284 1.9979 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6767 1.9564 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 4.0465 1.2566 -2.1170 39 1 8.6208 1.9358 1.1638 40 1 7.1774 0.8917 1.1034 41 1 9.1917 -0.2627 2.0843 42 1 8.5636 -1.0698 0.6271 43 1 10.9609 2.0477 0.3167 44 1 12.6881 4.2897 2.0823 45 1 12.0424 1.1711 -1.5773 46 1 12.2259 -0.5994 -1.5628 47 1 10.9414 -0.7498 -3.6785 48 1 10.7579 1.0206 -3.6929 49 1 12.3719 0.2912 -3.8722 50 1 9.1379 1.3235 -2.5817 51 1 9.9004 2.2176 -1.2414 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037894797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:58 Heat of formation + Delta-G solvation = 39.999132 kcal Electronic energy + Delta-G solvation = -29821.134696 eV Core-core repulsion = 25949.967211 eV Total energy + Delta-G solvation = -3871.167485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.78406 -39.71876 -37.61226 -35.71060 -34.31946 -33.68183 -31.91224 -31.58607 -31.15329 -29.30107 -28.46456 -26.79327 -25.55155 -23.75466 -23.45050 -22.79477 -22.27131 -21.11528 -20.66506 -19.31308 -18.18913 -17.85211 -17.21053 -16.40597 -15.87027 -15.65782 -15.42198 -14.84161 -14.50214 -14.28157 -14.10172 -13.89630 -13.75026 -13.55891 -13.42570 -13.19870 -13.06758 -12.82433 -12.61255 -12.47273 -12.12607 -11.86453 -11.75159 -11.68790 -11.32898 -11.20270 -11.06282 -10.97948 -10.80548 -10.69564 -10.37348 -10.21143 -10.14944 -10.02923 -9.70181 -9.62519 -9.46594 -9.37126 -9.03693 -8.81927 -8.07489 -6.90417 -5.73426 -3.01141 1.61983 2.04136 2.72982 3.40346 3.44736 3.49798 3.50360 3.61960 4.27348 4.43005 4.55400 4.61891 4.63529 4.89945 5.03939 5.14905 5.29217 5.31039 5.37632 5.38666 5.46070 5.52508 5.61473 5.64124 5.64586 5.71257 5.78798 5.82148 5.86362 5.89951 5.92825 5.96746 6.02213 6.20403 6.26742 6.27597 6.40286 6.46989 6.51516 6.57001 6.66965 6.74563 6.83014 6.88265 6.97451 7.05263 7.17449 7.72934 7.75323 7.93038 8.45281 8.49553 9.56590 10.14645 10.49929 11.49069 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.003042 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.837857 B = 9202.625817 C =10670.760903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.050 4.050 4 C 0.014 3.986 5 C -0.177 4.177 6 C 0.000 4.000 7 C 0.596 3.404 8 O -0.548 6.548 9 N -0.586 5.586 10 C 0.095 3.905 11 C -0.148 4.148 12 C 0.178 3.822 13 H 0.049 0.951 14 N -0.718 5.718 15 C -0.234 4.234 16 H 0.068 0.932 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.288 1.288 23 C -0.103 4.103 24 H 0.066 0.934 25 C -0.109 4.109 26 C -0.153 4.153 27 C 0.119 3.881 28 N -0.248 5.248 29 N -0.385 5.385 30 H 0.442 0.558 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.160 0.840 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.047 0.953 48 H 0.054 0.946 49 H 0.049 0.951 50 H 0.086 0.914 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.772 -6.472 -4.223 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.089 4.089 4 C -0.112 4.112 5 C -0.205 4.205 6 C -0.160 4.160 7 C 0.382 3.618 8 O -0.425 6.425 9 N -0.316 5.316 10 C -0.027 4.027 11 C -0.189 4.189 12 C 0.067 3.933 13 H 0.067 0.933 14 N -0.360 5.360 15 C -0.366 4.366 16 H 0.086 0.914 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.735 3.265 20 H -0.214 1.214 21 H -0.219 1.219 22 H -0.215 1.215 23 C -0.123 4.123 24 H 0.084 0.916 25 C -0.148 4.148 26 C -0.210 4.210 27 C -0.003 4.003 28 N -0.084 5.084 29 N -0.098 5.098 30 H 0.286 0.714 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.178 0.822 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.105 0.895 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.999 -6.385 -3.796 21.334 hybrid contribution 0.010 0.306 0.803 0.860 sum -19.988 -6.078 -2.992 21.105 Atomic orbital electron populations 1.21782 0.95285 1.02002 1.01974 1.21548 0.95925 0.95551 1.02924 1.20213 0.86447 0.98221 1.03978 1.21396 0.94889 1.07437 0.87478 1.21459 0.90435 1.08947 0.99643 1.22019 0.95253 1.08999 0.89748 1.16989 0.81668 0.76969 0.86185 1.90739 1.86467 1.52441 1.12896 1.47976 1.04944 1.69367 1.09352 1.22377 1.02422 0.99741 0.78187 1.22515 0.98449 0.96193 1.01784 1.20239 0.91637 0.91463 0.89913 0.93311 1.42452 1.59838 1.06482 1.27218 1.19172 1.23210 0.94802 0.99383 0.91389 1.24689 1.01420 0.95777 0.98969 1.69640 1.48961 0.99542 1.39982 0.86324 0.80125 0.76407 0.83630 1.21428 1.21868 1.21467 1.21665 0.95722 0.97604 0.97284 0.91598 1.21414 0.96186 1.03466 0.93688 1.21856 1.01024 1.01326 0.96841 1.21642 0.83228 0.98924 0.96527 1.73648 1.00378 1.19369 1.14966 1.43559 1.03305 1.53122 1.09860 0.71386 0.92409 0.92459 0.92689 0.91130 0.91945 0.89078 0.90667 0.82241 0.90173 0.87208 0.91001 0.93704 0.78106 0.93558 0.90495 0.92066 0.93375 0.92741 0.93219 0.89547 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 3 C -0.05 -0.30 5.77 -27.88 -0.16 -0.46 16 4 C 0.01 0.13 6.48 -82.21 -0.53 -0.40 16 5 C -0.18 -2.24 10.74 -39.36 -0.42 -2.66 16 6 C 0.00 0.00 6.82 -82.77 -0.56 -0.56 16 7 C 0.60 10.87 7.69 -12.39 -0.10 10.77 16 8 O -0.55 -11.03 16.36 5.30 0.09 -10.94 16 9 N -0.59 -10.63 2.98 -174.19 -0.52 -11.15 16 10 C 0.10 1.73 5.85 -3.71 -0.02 1.71 16 11 C -0.15 -2.68 5.78 -26.61 -0.15 -2.83 16 12 C 0.18 3.48 2.53 -67.89 -0.17 3.31 16 13 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 14 N -0.72 -17.00 3.72 -53.38 -0.20 -17.20 16 15 C -0.23 -6.24 9.93 -15.05 -0.15 -6.39 16 16 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 19 Si 0.90 22.14 29.55 -169.99 -5.02 17.12 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C -0.10 -1.78 2.12 -90.72 -0.19 -1.97 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 C -0.11 -1.83 5.19 -26.74 -0.14 -1.96 16 26 C -0.15 -2.17 9.67 37.16 0.36 -1.82 16 27 C 0.12 2.15 5.02 -3.93 -0.02 2.13 16 28 N -0.25 -3.51 8.72 33.42 0.29 -3.22 16 29 N -0.39 -3.90 6.83 33.50 0.23 -3.67 16 30 H 0.44 2.89 8.96 -190.44 -1.71 1.18 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.08 1.69 7.74 -51.93 -0.40 1.29 16 40 H 0.11 1.85 4.18 -68.83 -0.29 1.56 16 41 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.38 9.77 5.95 -40.82 -0.24 9.53 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.08 1.48 7.70 -51.93 -0.40 1.08 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.78 6.70 -51.93 -0.35 0.43 16 49 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 50 H 0.09 1.55 5.71 -51.93 -0.30 1.25 16 51 H 0.08 1.50 6.64 -51.93 -0.34 1.15 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -31.99 399.17 -10.46 -42.44 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -9.91 Total: 10.22 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -2.15 Total: -2.77 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.53 Total: -62.08 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.99 -10.46 -42.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037894797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.443 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds