Wall clock time and date at job start Tue Mar 31 2020 19:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46976 * 2 1 4 4 C 1.50700 * 109.47090 * 179.97438 * 3 2 1 5 5 C 1.35368 * 126.38407 * 84.99900 * 4 3 2 6 6 C 1.41495 * 105.50517 * 179.97438 * 5 4 3 7 7 C 1.47703 * 126.52252 * 179.97438 * 6 5 4 8 8 O 1.21573 * 119.99805 * 7.08553 * 7 6 5 9 9 N 1.34777 * 120.00723 * 187.07706 * 7 6 5 10 10 C 1.46929 * 120.62551 * 7.00395 * 9 7 6 11 11 C 1.53184 * 108.77586 * 126.36428 * 10 9 7 12 12 C 1.53043 * 109.31380 * 54.63832 * 11 10 9 13 13 H 1.09003 * 109.46013 * 178.62899 * 12 11 10 14 14 N 1.46495 * 109.46360 * 58.64845 * 12 11 10 15 15 C 1.36945 * 119.99663 * 85.00126 * 14 12 11 16 16 H 1.07996 * 119.99797 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99585 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00328 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99482 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47338 * 60.00379 * 19 17 15 21 21 H 1.48502 * 109.47182 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47419 * 300.00267 * 19 17 15 23 23 C 1.53044 * 109.53462 * 298.62998 * 12 11 10 24 24 H 1.09001 * 109.49778 * 301.38919 * 23 12 11 25 25 C 1.52995 * 109.49859 * 181.31571 * 23 12 11 26 26 C 1.52997 * 109.46972 * 175.00075 * 25 23 12 27 27 C 1.46926 * 120.63446 * 186.71937 * 9 7 6 28 28 N 1.31810 * 106.96230 * 0.02562 * 6 5 4 29 29 N 1.28470 * 110.07242 * 359.71566 * 28 6 5 30 30 H 0.97004 * 124.88555 * 180.29451 * 29 28 6 31 31 H 1.08999 * 109.47099 * 60.00054 * 1 2 3 32 32 H 1.08995 * 109.46655 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46852 * 299.99911 * 1 2 3 34 34 H 1.08993 * 109.47363 * 240.00185 * 2 1 3 35 35 H 1.09004 * 109.46845 * 119.99542 * 2 1 3 36 36 H 1.08999 * 109.47162 * 299.99907 * 3 2 1 37 37 H 1.09003 * 109.46852 * 59.99983 * 3 2 1 38 38 H 1.07999 * 127.24523 * 359.97438 * 5 4 3 39 39 H 1.09005 * 109.58602 * 246.15347 * 10 9 7 40 40 H 1.09005 * 109.58823 * 6.57251 * 10 9 7 41 41 H 1.09008 * 109.49657 * 174.58531 * 11 10 9 42 42 H 1.08998 * 109.50157 * 294.64712 * 11 10 9 43 43 H 0.96994 * 120.00299 * 265.00893 * 14 12 11 44 44 H 0.97001 * 119.99897 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.47286 * 295.00069 * 25 23 12 46 46 H 1.09006 * 109.47061 * 55.00443 * 25 23 12 47 47 H 1.09004 * 109.47521 * 299.99831 * 26 25 23 48 48 H 1.08995 * 109.47374 * 60.00251 * 26 25 23 49 49 H 1.09010 * 109.47166 * 180.02562 * 26 25 23 50 50 H 1.09002 * 109.58514 * 353.42054 * 27 9 7 51 51 H 1.08993 * 109.58475 * 113.84805 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.3505 1.3474 -1.0847 6 6 5.6723 1.3921 -0.5818 7 6 6.9170 1.3224 -1.3740 8 8 6.8667 1.3454 -2.5884 9 7 8.1086 1.2333 -0.7506 10 6 8.1798 1.0506 0.7056 11 6 9.0517 -0.1723 1.0070 12 6 10.4126 -0.0035 0.3276 13 1 11.0437 -0.8611 0.5606 14 7 11.0530 1.2206 0.8150 15 6 11.7817 1.1972 1.9742 16 1 11.8845 0.2763 2.5289 17 6 12.3890 2.3570 2.4357 18 7 12.2641 3.4792 1.7595 19 14 13.3835 2.3249 4.0167 20 1 14.5066 1.3636 3.8756 21 1 13.9235 3.6811 4.2894 22 1 12.5106 1.9046 5.1422 23 6 10.2199 0.0905 -1.1878 24 1 9.7215 -0.8096 -1.5477 25 6 11.5833 0.2263 -1.8685 26 6 11.4004 0.1949 -3.3872 27 6 9.3610 1.3108 -1.5149 28 7 5.5817 1.5067 0.7282 29 7 4.3476 1.5432 1.0833 30 1 4.0358 1.6284 1.9979 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6767 1.9564 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 4.0465 1.2566 -2.1170 39 1 8.6208 1.9358 1.1638 40 1 7.1774 0.8917 1.1034 41 1 9.1917 -0.2627 2.0843 42 1 8.5636 -1.0698 0.6271 43 1 10.9609 2.0477 0.3167 44 1 12.6881 4.2897 2.0823 45 1 12.0424 1.1711 -1.5773 46 1 12.2259 -0.5994 -1.5628 47 1 10.9414 -0.7498 -3.6785 48 1 10.7579 1.0206 -3.6929 49 1 12.3719 0.2912 -3.8722 50 1 9.1379 1.3235 -2.5817 51 1 9.9004 2.2176 -1.2414 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037894797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:57 Heat of formation + Delta-G solvation = 21.135983 kcal Electronic energy + Delta-G solvation = -29821.952664 eV Core-core repulsion = 25949.967211 eV Total energy + Delta-G solvation = -3871.985452 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.76534 -41.18245 -39.12945 -36.30436 -35.83329 -35.34922 -33.41897 -32.91098 -31.93152 -31.00064 -29.94528 -27.43754 -27.00715 -25.55134 -25.01212 -24.10345 -22.85080 -22.12345 -21.89436 -20.67484 -19.57556 -19.31487 -18.81172 -17.64738 -17.08074 -16.93635 -16.55493 -16.01615 -15.90661 -15.83793 -15.53013 -15.09691 -14.83444 -14.77680 -14.63267 -14.53157 -14.27521 -14.10771 -13.95269 -13.58427 -13.21679 -12.99430 -12.89169 -12.80983 -12.64807 -12.45775 -12.38374 -12.29835 -12.15832 -12.10257 -11.83560 -11.63258 -11.54621 -11.45407 -11.41862 -11.15433 -11.03378 -10.70688 -10.43524 -9.93102 -9.58715 -8.90442 -7.87036 -5.13348 0.47281 1.11042 1.48993 1.50799 1.56591 1.77605 2.16542 2.30823 2.60446 3.28379 3.46256 3.65320 3.74742 3.87263 3.93878 4.06488 4.11114 4.16449 4.20643 4.39896 4.41389 4.44526 4.47148 4.49119 4.56319 4.62634 4.70524 4.71805 4.86669 4.87376 4.95261 4.99764 5.01161 5.04143 5.07400 5.16628 5.20337 5.24989 5.27696 5.31908 5.35521 5.38851 5.45967 5.50190 5.53612 5.60842 5.68819 6.14006 6.34187 6.39804 6.83221 7.11190 7.41440 8.17786 8.42192 9.36211 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.003042 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.837857 B = 9202.625817 C =10670.760903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.046 4.046 4 C 0.042 3.958 5 C -0.195 4.195 6 C -0.031 4.031 7 C 0.593 3.407 8 O -0.573 6.573 9 N -0.589 5.589 10 C 0.107 3.893 11 C -0.140 4.140 12 C 0.172 3.828 13 H 0.049 0.951 14 N -0.723 5.723 15 C -0.227 4.227 16 H 0.075 0.925 17 C -0.075 4.075 18 N -0.970 5.970 19 Si 0.965 3.035 20 H -0.281 1.281 21 H -0.302 1.302 22 H -0.280 1.280 23 C -0.092 4.092 24 H 0.083 0.917 25 C -0.104 4.104 26 C -0.146 4.146 27 C 0.124 3.876 28 N -0.270 5.270 29 N -0.367 5.367 30 H 0.459 0.541 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.164 0.836 39 H 0.044 0.956 40 H 0.129 0.871 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.373 0.627 44 H 0.247 0.753 45 H 0.045 0.955 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.049 0.951 49 H 0.061 0.939 50 H 0.089 0.911 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.082 -7.974 -3.654 24.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.085 4.085 4 C -0.085 4.085 5 C -0.223 4.223 6 C -0.189 4.189 7 C 0.380 3.620 8 O -0.452 6.452 9 N -0.320 5.320 10 C -0.016 4.016 11 C -0.181 4.181 12 C 0.064 3.936 13 H 0.067 0.933 14 N -0.364 5.364 15 C -0.359 4.359 16 H 0.092 0.908 17 C -0.267 4.267 18 N -0.621 5.621 19 Si 0.796 3.204 20 H -0.207 1.207 21 H -0.228 1.228 22 H -0.206 1.206 23 C -0.111 4.111 24 H 0.102 0.898 25 C -0.142 4.142 26 C -0.203 4.203 27 C 0.002 3.998 28 N -0.107 5.107 29 N -0.082 5.082 30 H 0.307 0.693 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.182 0.818 39 H 0.062 0.938 40 H 0.146 0.854 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.206 0.794 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.068 0.932 49 H 0.080 0.920 50 H 0.108 0.892 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.328 -7.939 -3.207 23.913 hybrid contribution 0.589 0.733 0.617 1.125 sum -21.738 -7.206 -2.590 23.048 Atomic orbital electron populations 1.21761 0.94215 1.02223 1.02625 1.21513 0.96780 0.95056 1.02382 1.20391 0.83387 0.98887 1.05834 1.21836 0.96340 1.04219 0.86080 1.21644 0.89671 1.10082 1.00900 1.21775 0.95060 1.11627 0.90455 1.17382 0.82338 0.76031 0.86202 1.90704 1.86978 1.53549 1.13995 1.48009 1.05107 1.69604 1.09243 1.22240 1.03173 0.98092 0.78121 1.22399 0.97457 0.97063 1.01178 1.20448 0.92065 0.89599 0.91524 0.93346 1.42553 1.59901 1.07424 1.26483 1.19537 1.21910 0.94700 0.99715 0.90751 1.25408 1.03428 0.95707 1.02116 1.69809 1.50655 0.99940 1.41690 0.85327 0.78865 0.75799 0.80440 1.20748 1.22828 1.20643 1.21577 0.96091 0.97788 0.95690 0.89849 1.21334 0.95501 1.01785 0.95608 1.21789 1.01855 1.01984 0.94697 1.21510 0.83395 0.98229 0.96661 1.73421 1.02469 1.20334 1.14437 1.43609 1.02283 1.51277 1.11070 0.69288 0.92024 0.92524 0.91785 0.92211 0.92068 0.87922 0.88150 0.81791 0.93804 0.85436 0.91706 0.91405 0.79392 0.94412 0.93643 0.91789 0.91798 0.93174 0.91995 0.89247 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 71.98 0.71 -0.24 16 2 C -0.12 -1.03 5.92 30.60 0.18 -0.85 16 3 C -0.05 -0.39 5.77 29.85 0.17 -0.22 16 4 C 0.04 0.71 6.48 41.40 0.27 0.98 16 5 C -0.19 -4.71 10.74 22.41 0.24 -4.47 16 6 C -0.03 -0.94 6.82 42.45 0.29 -0.65 16 7 C 0.59 21.86 7.69 86.74 0.67 22.52 16 8 O -0.57 -23.36 16.36 -3.94 -0.06 -23.43 16 9 N -0.59 -21.78 2.98 -823.29 -2.45 -24.23 16 10 C 0.11 3.91 5.85 86.36 0.51 4.41 16 11 C -0.14 -4.99 5.78 30.67 0.18 -4.81 16 12 C 0.17 6.75 2.53 45.02 0.11 6.86 16 13 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 14 N -0.72 -35.14 3.72 -322.80 -1.20 -36.34 16 15 C -0.23 -12.21 9.93 84.03 0.83 -11.37 16 16 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 17 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 18 N -0.97 -59.22 13.06 21.65 0.28 -58.94 16 19 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 21 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 C -0.09 -3.16 2.12 -10.86 -0.02 -3.18 16 24 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 25 C -0.10 -3.48 5.19 30.59 0.16 -3.32 16 26 C -0.15 -4.00 9.67 71.98 0.70 -3.31 16 27 C 0.12 4.63 5.02 86.22 0.43 5.06 16 28 N -0.27 -7.36 8.72 -48.18 -0.42 -7.78 16 29 N -0.37 -6.60 6.83 -47.93 -0.33 -6.92 16 30 H 0.46 4.68 8.96 -219.99 -1.97 2.71 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 0.30 8.14 -2.39 -0.02 0.29 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 36 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.04 1.93 7.74 -2.38 -0.02 1.91 16 40 H 0.13 4.26 4.18 -24.26 -0.10 4.16 16 41 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.37 19.87 5.95 -92.71 -0.55 19.32 16 44 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 45 H 0.04 1.80 7.70 -2.39 -0.02 1.78 16 46 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 47 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.05 1.41 6.70 -2.39 -0.02 1.40 16 49 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 50 H 0.09 3.27 5.71 -2.39 -0.01 3.25 16 51 H 0.05 2.10 6.64 -2.39 -0.02 2.08 16 Total: -1.00 -70.82 399.17 2.06 -68.75 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -1.68 Total: 37.06 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 5.89 Total: 3.66 kcal Atomic # 7 Polarization: -130.10 SS G_CDS: -4.12 Total: -134.22 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.06 Total: -23.43 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -70.82 2.06 -68.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037894797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.890 kcal (2) G-P(sol) polarization free energy of solvation -70.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds