Wall clock time and date at job start Tue Mar 31 2020 19:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46929 * 2 1 4 4 C 1.50703 * 109.46702 * 119.99279 * 2 1 3 5 5 C 1.35363 * 126.38541 * 325.03074 * 4 2 1 6 6 C 1.41507 * 105.50095 * 179.97438 * 5 4 2 7 7 C 1.47711 * 126.51839 * 180.02562 * 6 5 4 8 8 O 1.21566 * 119.99768 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99964 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99893 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.49104 * 325.05223 * 10 9 7 12 12 C 1.52565 * 109.48915 * 205.00441 * 10 9 7 13 13 C 1.47094 * 114.32720 * 155.01909 * 12 10 9 14 14 C 1.54869 * 110.31898 * 62.80217 * 13 12 10 15 15 N 1.44575 * 109.60238 * 288.73456 * 14 13 12 16 16 C 1.36935 * 118.64350 * 270.72629 * 15 14 13 17 17 H 1.08001 * 120.00297 * 26.46896 * 16 15 14 18 18 C 1.38814 * 119.99675 * 206.46750 * 16 15 14 19 19 N 1.31612 * 120.00519 * 15.65218 * 18 16 15 20 20 Si 1.86806 * 119.99599 * 195.65629 * 18 16 15 21 21 H 1.48497 * 109.47245 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46935 * 120.00123 * 20 18 16 23 23 H 1.48499 * 109.47077 * 239.99869 * 20 18 16 24 24 C 1.47609 * 122.71319 * 90.70238 * 15 14 13 25 25 C 1.50882 * 109.48856 * 85.12122 * 10 9 7 26 26 N 1.31809 * 106.96021 * 359.77724 * 6 5 4 27 27 N 1.28457 * 110.07778 * 0.37135 * 26 6 5 28 28 C 1.46502 * 124.88776 * 179.88222 * 27 26 6 29 29 H 1.08990 * 109.47562 * 300.00525 * 1 2 3 30 30 H 1.09005 * 109.46643 * 60.01034 * 1 2 3 31 31 H 1.09003 * 109.46704 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47562 * 239.99474 * 2 1 3 33 33 H 1.09001 * 109.46742 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46798 * 299.99090 * 3 2 1 35 35 H 1.08990 * 109.46923 * 59.99237 * 3 2 1 36 36 H 1.07992 * 127.25488 * 359.97438 * 5 4 2 37 37 H 0.97000 * 119.99513 * 0.02562 * 9 7 6 38 38 H 1.08995 * 108.51262 * 276.27896 * 12 10 9 39 39 H 1.09007 * 108.51183 * 33.76695 * 12 10 9 40 40 H 1.08997 * 109.32983 * 183.06523 * 13 12 10 41 41 H 1.08998 * 109.32938 * 302.71897 * 13 12 10 42 42 H 1.09006 * 109.44726 * 48.77300 * 14 13 12 43 43 H 1.08994 * 109.44912 * 168.69189 * 14 13 12 44 44 H 0.97000 * 120.00498 * 179.97438 * 19 18 16 45 45 H 1.08996 * 108.94685 * 78.57408 * 24 15 14 46 46 H 1.08998 * 108.94655 * 197.29483 * 24 15 14 47 47 H 1.09001 * 109.36384 * 332.03947 * 25 10 9 48 48 H 1.08993 * 109.36835 * 91.65799 * 25 10 9 49 49 H 1.09001 * 109.47094 * 269.69896 * 28 27 26 50 50 H 1.08999 * 109.47031 * 149.69726 * 28 27 26 51 51 H 1.09002 * 109.47131 * 29.69903 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.4580 -0.6966 2.4563 6 6 2.2880 -1.5017 3.2719 7 6 2.0875 -1.8025 4.7041 8 8 1.1305 -1.3400 5.2941 9 7 2.9650 -2.5905 5.3565 10 6 2.7658 -2.8893 6.7768 11 1 2.3352 -2.0202 7.2744 12 6 4.1074 -3.2304 7.4182 13 6 4.1656 -2.9863 8.8676 14 6 3.1469 -3.8892 9.6063 15 7 1.8040 -3.4264 9.3369 16 6 1.2560 -2.4837 10.1652 17 1 1.8960 -1.8000 10.7033 18 6 -0.1221 -2.4066 10.3131 19 7 -0.8832 -3.4055 9.9191 20 14 -0.8963 -0.8851 11.0714 21 1 0.1684 0.0864 11.4287 22 1 -1.8265 -0.2639 10.0946 23 1 -1.6465 -1.2686 12.2943 24 6 0.9993 -3.9279 8.2056 25 6 1.8308 -4.0651 6.9176 26 7 3.2711 -1.9366 2.5092 27 7 3.1388 -1.4796 1.3160 28 6 4.0534 -1.7579 0.2059 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8898 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6766 1.9564 0.8898 36 1 0.5562 -0.1800 2.7500 37 1 3.7283 -2.9598 4.8855 38 1 4.3204 -4.2836 7.2357 39 1 4.8829 -2.6354 6.9357 40 1 5.1701 -3.2041 9.2301 41 1 3.9287 -1.9413 9.0673 42 1 3.2535 -4.9166 9.2582 43 1 3.3366 -3.8482 10.6788 44 1 -1.8461 -3.3518 10.0229 45 1 0.5898 -4.9034 8.4676 46 1 0.1768 -3.2366 8.0224 47 1 1.1620 -4.1000 6.0576 48 1 2.4121 -4.9862 6.9586 49 1 4.8361 -0.9996 0.1811 50 1 3.5006 -1.7404 -0.7334 51 1 4.5040 -2.7408 0.3440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052369776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:28 Heat of formation + Delta-G solvation = 32.377900 kcal Electronic energy + Delta-G solvation = -29724.391874 eV Core-core repulsion = 25852.893907 eV Total energy + Delta-G solvation = -3871.497966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.76325 -40.92050 -39.13434 -36.72661 -36.32318 -34.62657 -34.33139 -32.71163 -32.17030 -30.62861 -28.62469 -28.04233 -27.64706 -25.78370 -25.15305 -24.03786 -23.46411 -21.69792 -21.36711 -21.02113 -20.29323 -18.56957 -18.40373 -17.48650 -17.35418 -17.28263 -16.74256 -16.16484 -15.80790 -15.52363 -15.50543 -15.24398 -14.91439 -14.79173 -14.68521 -14.33989 -14.02316 -13.98513 -13.64453 -13.57706 -13.40079 -13.23356 -13.01758 -13.01246 -12.78180 -12.61909 -12.50366 -12.14678 -12.12657 -12.02029 -11.80496 -11.78763 -11.74708 -11.53032 -11.42524 -11.34502 -11.14684 -10.43878 -10.26782 -9.95932 -9.94998 -8.63789 -7.84601 -5.29770 0.49920 1.07966 1.40703 1.45635 1.53474 1.53638 2.17992 2.35812 2.51296 3.27602 3.29962 3.49279 3.68938 3.78398 3.85707 4.06361 4.07164 4.17420 4.32009 4.37621 4.41192 4.45666 4.47445 4.48046 4.60645 4.67134 4.68332 4.71176 4.80898 4.83601 4.93792 4.97380 4.98851 5.01282 5.13055 5.14739 5.21062 5.23856 5.28724 5.34754 5.36541 5.41939 5.50392 5.58675 5.62776 5.70171 5.77718 5.84360 6.42671 6.48984 6.89551 7.19687 7.23321 7.97489 8.36036 9.20720 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.002942 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.944037 B = 9515.108542 C =10751.063381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.018 4.018 3 C -0.142 4.142 4 C 0.033 3.967 5 C -0.203 4.203 6 C -0.040 4.040 7 C 0.592 3.408 8 O -0.576 6.576 9 N -0.699 5.699 10 C 0.163 3.837 11 H 0.053 0.947 12 C -0.102 4.102 13 C -0.132 4.132 14 C 0.148 3.852 15 N -0.604 5.604 16 C -0.259 4.259 17 H 0.066 0.934 18 C -0.052 4.052 19 N -0.935 5.935 20 Si 0.957 3.043 21 H -0.266 1.266 22 H -0.299 1.299 23 H -0.286 1.286 24 C 0.197 3.803 25 C -0.131 4.131 26 N -0.266 5.266 27 N -0.272 5.272 28 C 0.070 3.930 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.112 0.888 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.147 0.853 37 H 0.413 0.587 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.037 0.963 42 H 0.049 0.951 43 H 0.041 0.959 44 H 0.246 0.754 45 H -0.001 1.001 46 H 0.028 0.972 47 H 0.044 0.956 48 H 0.076 0.924 49 H 0.104 0.896 50 H 0.125 0.875 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.912 3.905 -27.382 30.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.038 4.038 3 C -0.200 4.200 4 C -0.093 4.093 5 C -0.231 4.231 6 C -0.198 4.198 7 C 0.377 3.623 8 O -0.454 6.454 9 N -0.350 5.350 10 C 0.059 3.941 11 H 0.071 0.929 12 C -0.140 4.140 13 C -0.172 4.172 14 C 0.021 3.979 15 N -0.327 5.327 16 C -0.389 4.389 17 H 0.083 0.917 18 C -0.247 4.247 19 N -0.581 5.581 20 Si 0.786 3.214 21 H -0.190 1.190 22 H -0.227 1.227 23 H -0.213 1.213 24 C 0.071 3.929 25 C -0.171 4.171 26 N -0.104 5.104 27 N -0.061 5.061 28 C -0.068 4.068 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.165 0.835 37 H 0.250 0.750 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.017 0.983 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.094 0.906 49 H 0.122 0.878 50 H 0.143 0.857 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.177 3.478 -27.001 30.694 hybrid contribution -1.618 0.952 0.782 2.034 sum 12.559 4.430 -26.219 29.407 Atomic orbital electron populations 1.21861 0.93183 1.02296 1.03062 1.19854 0.96627 0.95763 0.91547 1.21847 1.01308 0.93897 1.02945 1.21777 0.90038 0.99257 0.98190 1.21566 1.03349 1.05636 0.92596 1.21669 0.97758 1.05997 0.94336 1.17369 0.82087 0.78163 0.84642 1.90837 1.31960 1.54206 1.68385 1.45935 1.28074 1.49724 1.11267 1.20261 0.97051 0.97544 0.79281 0.92910 1.20512 0.94209 1.02870 0.96397 1.21300 1.00342 1.00298 0.95297 1.20960 0.83833 0.95587 0.97475 1.43851 1.13082 1.47320 1.28400 1.19511 0.90285 1.08479 1.20661 0.91658 1.25740 0.97870 0.99821 1.01274 1.70211 1.03716 1.31013 1.53191 0.85349 0.78427 0.80338 0.77288 1.18987 1.22675 1.21272 1.20560 0.91806 0.95801 0.84698 1.22237 0.98581 0.98388 0.97908 1.73421 1.23144 1.21141 0.92648 1.45803 1.19528 1.32947 1.07798 1.22679 0.93144 1.05474 0.85455 0.93291 0.89438 0.92915 0.86969 0.92192 0.89460 0.93699 0.83486 0.74969 0.90104 0.90616 0.88960 0.94407 0.93292 0.94037 0.94483 0.98320 0.95327 0.93697 0.90584 0.87772 0.85684 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.78 71.98 0.63 -1.15 16 2 C -0.02 -0.20 3.10 -11.53 -0.04 -0.23 16 3 C -0.14 -1.38 9.18 71.98 0.66 -0.72 16 4 C 0.03 0.64 5.84 41.40 0.24 0.88 16 5 C -0.20 -5.85 9.96 22.41 0.22 -5.62 16 6 C -0.04 -1.29 7.13 42.46 0.30 -0.98 16 7 C 0.59 23.50 7.64 86.75 0.66 24.16 16 8 O -0.58 -28.90 16.59 -3.93 -0.07 -28.97 16 9 N -0.70 -23.99 4.93 -449.51 -2.22 -26.20 16 10 C 0.16 6.36 2.06 44.16 0.09 6.45 16 11 H 0.05 2.65 6.92 -2.38 -0.02 2.63 16 12 C -0.10 -3.12 4.69 28.61 0.13 -2.99 16 13 C -0.13 -4.46 5.74 29.40 0.17 -4.29 16 14 C 0.15 6.14 5.65 87.38 0.49 6.63 16 15 N -0.60 -31.84 2.27 -698.42 -1.59 -33.43 16 16 C -0.26 -15.16 9.44 84.03 0.79 -14.37 16 17 H 0.07 3.74 7.88 -2.91 -0.02 3.71 16 18 C -0.05 -3.15 4.87 84.86 0.41 -2.74 16 19 N -0.93 -59.70 11.01 21.65 0.24 -59.46 16 20 Si 0.96 49.23 29.58 68.60 2.03 51.26 16 21 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.30 -15.80 7.11 99.48 0.71 -15.09 16 23 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 24 C 0.20 10.57 4.66 86.48 0.40 10.98 16 25 C -0.13 -5.55 5.38 30.22 0.16 -5.39 16 26 N -0.27 -6.91 11.67 -48.17 -0.56 -7.47 16 27 N -0.27 -5.02 3.70 -355.91 -1.32 -6.34 16 28 C 0.07 0.44 11.11 127.77 1.42 1.86 16 29 H 0.05 0.77 7.35 -2.39 -0.02 0.75 16 30 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 0.54 6.86 -2.39 -0.02 0.53 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.15 4.44 7.47 -2.91 -0.02 4.42 16 37 H 0.41 11.34 8.33 -92.71 -0.77 10.57 16 38 H 0.08 2.12 7.36 -2.39 -0.02 2.10 16 39 H 0.08 1.96 8.04 -2.38 -0.02 1.94 16 40 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.86 8.07 -2.38 -0.02 1.85 16 43 H 0.04 1.74 7.99 -2.39 -0.02 1.72 16 44 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 45 H 0.00 -0.07 8.03 -2.39 -0.02 -0.09 16 46 H 0.03 1.79 6.33 -2.39 -0.02 1.78 16 47 H 0.04 1.98 7.85 -2.39 -0.02 1.96 16 48 H 0.08 2.75 7.32 -2.39 -0.02 2.74 16 49 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.12 0.02 6.88 -2.39 -0.02 0.01 16 51 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -83.78 400.56 3.44 -80.34 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.15 Total: 17.80 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 6.77 Total: 12.47 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -5.44 Total: -132.91 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.07 Total: -28.97 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.03 Total: 51.26 kcal Total: -83.78 3.44 -80.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052369776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.718 kcal (2) G-P(sol) polarization free energy of solvation -83.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds