Wall clock time and date at job start Tue Mar 31 2020 19:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47288 * 2 1 4 4 C 1.50701 * 109.46837 * 120.00275 * 2 1 3 5 5 C 1.35366 * 126.38849 * 325.02379 * 4 2 1 6 6 C 1.41502 * 105.50637 * 179.73976 * 5 4 2 7 7 C 1.47710 * 126.51864 * 179.97438 * 6 5 4 8 8 O 1.21578 * 119.99689 * 359.97438 * 7 6 5 9 9 N 1.34767 * 120.00068 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00251 * 179.97438 * 9 7 6 11 11 H 1.09006 * 110.21095 * 36.93323 * 10 9 7 12 12 C 1.50124 * 110.25481 * 159.01769 * 10 9 7 13 13 C 1.54839 * 110.82224 * 216.65552 * 12 10 9 14 14 C 1.54900 * 110.14087 * 321.13807 * 13 12 10 15 15 N 1.43437 * 116.07778 * 318.63380 * 14 13 12 16 16 C 1.36938 * 120.53795 * 271.59398 * 15 14 13 17 17 H 1.08001 * 120.00089 * 140.20812 * 16 15 14 18 18 C 1.38814 * 119.99967 * 320.20263 * 16 15 14 19 19 N 1.31613 * 119.99981 * 156.34340 * 18 16 15 20 20 Si 1.86793 * 119.99984 * 336.35101 * 18 16 15 21 21 H 1.48498 * 109.47493 * 95.57012 * 20 18 16 22 22 H 1.48501 * 109.47023 * 215.56886 * 20 18 16 23 23 H 1.48502 * 109.47269 * 335.56800 * 20 18 16 24 24 C 1.50172 * 118.92288 * 91.57002 * 15 14 13 25 25 C 1.46237 * 107.53314 * 289.58773 * 24 15 14 26 26 N 1.31806 * 106.96001 * 359.97438 * 6 5 4 27 27 N 1.28465 * 110.07702 * 0.02562 * 26 6 5 28 28 C 1.46501 * 124.88468 * 179.97438 * 27 26 6 29 29 H 1.09002 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47266 * 299.99829 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.00052 * 1 2 3 32 32 H 1.09005 * 109.46822 * 240.00009 * 2 1 3 33 33 H 1.09000 * 109.46933 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47033 * 299.99958 * 3 2 1 35 35 H 1.09001 * 109.46827 * 59.99902 * 3 2 1 36 36 H 1.08004 * 127.24430 * 359.75578 * 5 4 2 37 37 H 0.97003 * 120.00191 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.20924 * 337.00663 * 12 10 9 39 39 H 1.09010 * 109.20955 * 96.31006 * 12 10 9 40 40 H 1.08995 * 109.36020 * 200.92452 * 13 12 10 41 41 H 1.09002 * 109.24365 * 81.26788 * 13 12 10 42 42 H 1.09000 * 108.15899 * 196.92524 * 14 13 12 43 43 H 1.09000 * 108.00598 * 80.22308 * 14 13 12 44 44 H 0.96994 * 120.00456 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.84400 * 170.08591 * 24 15 14 46 46 H 1.08992 * 109.90169 * 49.13294 * 24 15 14 47 47 H 1.09001 * 108.52193 * 297.16976 * 25 24 15 48 48 H 1.09002 * 108.40154 * 179.56454 * 25 24 15 49 49 H 1.08999 * 109.47093 * 270.02485 * 28 27 26 50 50 H 1.09002 * 109.47240 * 30.02805 * 28 27 26 51 51 H 1.09002 * 109.47133 * 150.02252 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.4581 -0.6969 2.4562 6 6 2.2850 -1.5067 3.2703 7 6 2.0839 -1.8085 4.7022 8 8 1.1297 -1.3419 5.2936 9 7 2.9582 -2.6011 5.3530 10 6 2.7592 -2.9000 6.7733 11 1 1.6965 -3.0109 6.9895 12 6 3.5022 -4.1487 7.1507 13 6 2.6989 -4.9760 8.1841 14 6 2.0100 -4.0336 9.2023 15 7 2.7929 -2.9240 9.6642 16 6 3.6079 -3.0545 10.7569 17 1 4.5827 -2.5895 10.7621 18 6 3.1811 -3.7842 11.8579 19 7 4.0632 -4.3070 12.6830 20 14 1.3549 -4.0244 12.1684 21 1 0.9229 -5.3260 11.5987 22 1 1.0957 -4.0137 13.6305 23 1 0.5941 -2.9246 11.5227 24 6 2.7046 -1.6171 8.9298 25 6 3.3605 -1.7943 7.6348 26 7 3.2688 -1.9405 2.5079 27 7 3.1357 -1.4844 1.3143 28 6 4.0497 -1.7634 0.2039 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 0.5580 -0.1776 2.7507 37 1 3.7194 -2.9738 4.8811 38 1 3.6663 -4.7520 6.2579 39 1 4.4661 -3.8763 7.5807 40 1 3.3749 -5.6476 8.7133 41 1 1.9411 -5.5621 7.6642 42 1 1.7163 -4.6261 10.0688 43 1 1.1048 -3.6411 8.7391 44 1 3.7651 -4.8172 13.4522 45 1 3.2126 -0.8381 9.4983 46 1 1.6597 -1.3448 8.7812 47 1 4.4121 -2.0233 7.8078 48 1 3.2977 -0.8547 7.0859 49 1 4.8355 -1.0084 0.1816 50 1 4.4961 -2.7486 0.3396 51 1 3.4975 -1.7411 -0.7356 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052369777.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:38 Heat of formation + Delta-G solvation = 63.221993 kcal Electronic energy + Delta-G solvation = -29474.037198 eV Core-core repulsion = 25603.876732 eV Total energy + Delta-G solvation = -3870.160466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.93725 -39.64792 -37.74112 -36.18841 -34.70990 -33.74797 -32.29919 -31.78872 -30.65513 -29.83075 -27.80443 -27.62878 -26.17605 -24.48637 -23.32211 -23.11830 -22.59678 -20.57059 -20.06993 -19.73247 -19.24937 -17.60029 -16.59327 -16.57565 -16.31720 -16.08436 -15.04010 -14.89156 -14.64766 -14.55175 -14.36575 -14.12671 -13.99486 -13.71417 -13.57255 -13.35854 -13.02259 -12.91550 -12.78852 -12.59913 -12.46552 -12.07812 -11.99229 -11.75174 -11.69017 -11.58308 -11.33998 -11.04570 -10.95173 -10.66218 -10.45445 -10.41261 -10.09291 -9.87256 -9.81148 -9.60690 -9.39766 -9.31175 -9.13594 -8.70632 -8.37709 -6.66255 -5.94347 -3.35918 1.48633 1.94464 2.18430 3.33703 3.39830 3.52573 3.53731 3.62803 4.02404 4.09924 4.33952 4.56070 4.60866 4.67498 4.69891 4.82546 4.96087 4.99947 5.12093 5.19395 5.29860 5.30716 5.33886 5.38330 5.40281 5.47427 5.56184 5.62001 5.67030 5.76003 5.89856 5.98143 6.00268 6.01146 6.22715 6.30932 6.36165 6.41075 6.50753 6.58929 6.62151 6.76881 6.85361 6.87890 6.96154 6.99156 7.08017 7.58499 7.86200 8.16315 8.40638 8.43652 9.09623 9.79113 10.25572 11.21220 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026969 B = 0.002365 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.994788 B =11837.635937 C =12177.838987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 C -0.144 4.144 4 C 0.014 3.986 5 C -0.173 4.173 6 C -0.009 4.009 7 C 0.600 3.400 8 O -0.531 6.531 9 N -0.709 5.709 10 C 0.150 3.850 11 H 0.093 0.907 12 C -0.113 4.113 13 C -0.136 4.136 14 C 0.145 3.855 15 N -0.601 5.601 16 C -0.264 4.264 17 H 0.074 0.926 18 C 0.039 3.961 19 N -0.899 5.899 20 Si 0.876 3.124 21 H -0.286 1.286 22 H -0.302 1.302 23 H -0.269 1.269 24 C 0.139 3.861 25 C -0.137 4.137 26 N -0.264 5.264 27 N -0.283 5.283 28 C 0.085 3.915 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.160 0.840 37 H 0.401 0.599 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.030 0.970 44 H 0.262 0.738 45 H 0.068 0.932 46 H 0.035 0.965 47 H 0.064 0.936 48 H 0.047 0.953 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 6.806 -31.061 31.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.110 4.110 5 C -0.201 4.201 6 C -0.170 4.170 7 C 0.384 3.616 8 O -0.405 6.405 9 N -0.359 5.359 10 C 0.047 3.953 11 H 0.111 0.889 12 C -0.151 4.151 13 C -0.178 4.178 14 C 0.017 3.983 15 N -0.324 5.324 16 C -0.393 4.393 17 H 0.092 0.908 18 C -0.162 4.162 19 N -0.540 5.540 20 Si 0.706 3.294 21 H -0.214 1.214 22 H -0.230 1.230 23 H -0.193 1.193 24 C 0.015 3.985 25 C -0.177 4.177 26 N -0.099 5.099 27 N -0.071 5.071 28 C -0.055 4.055 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.178 0.822 37 H 0.236 0.764 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.053 0.947 47 H 0.083 0.917 48 H 0.066 0.934 49 H 0.103 0.897 50 H 0.116 0.884 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.926 6.379 -30.495 31.214 hybrid contribution -1.076 -0.053 -0.056 1.078 sum -3.002 6.327 -30.550 31.343 Atomic orbital electron populations 1.21835 0.92977 1.02640 1.02722 1.19669 0.96833 0.95439 0.92344 1.21854 1.01035 0.94555 1.02780 1.21350 0.91060 1.00374 0.98188 1.21466 1.03019 1.04578 0.91067 1.22016 0.95771 1.03745 0.95420 1.16887 0.82576 0.78798 0.83346 1.90806 1.30508 1.52070 1.67154 1.46126 1.28227 1.49890 1.11667 1.20397 1.01535 0.95617 0.77795 0.88875 1.21686 1.00214 0.95061 0.98133 1.22745 0.99349 0.98595 0.97062 1.20698 0.92570 0.89768 0.95221 1.44212 1.52632 1.04123 1.31396 1.18700 0.96148 1.32987 0.91457 0.90803 1.25532 0.97004 0.97984 0.95696 1.69891 1.33436 1.34355 1.16285 0.86915 0.88382 0.78117 0.75992 1.21401 1.23040 1.19324 1.20377 0.97911 0.89107 0.91069 1.21301 1.01292 0.97574 0.97509 1.73528 1.23762 1.21069 0.91543 1.45272 1.19507 1.34461 1.07835 1.22143 0.92952 1.04324 0.86110 0.92150 0.91599 0.91763 0.90287 0.92733 0.91691 0.91719 0.82216 0.76402 0.93250 0.90663 0.91703 0.93169 0.93954 0.95160 0.92803 0.91353 0.94690 0.91725 0.93387 0.89737 0.88433 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.78 37.16 0.33 -0.46 16 2 C -0.02 -0.13 3.10 -91.77 -0.28 -0.41 16 3 C -0.14 -0.74 9.18 37.16 0.34 -0.40 16 4 C 0.01 0.13 5.84 -82.21 -0.48 -0.35 16 5 C -0.17 -2.08 9.96 -39.36 -0.39 -2.48 16 6 C -0.01 -0.13 7.13 -82.77 -0.59 -0.72 16 7 C 0.60 9.86 7.68 -12.39 -0.10 9.76 16 8 O -0.53 -10.36 16.64 5.30 0.09 -10.28 16 9 N -0.71 -10.80 5.01 -56.44 -0.28 -11.08 16 10 C 0.15 2.59 2.17 -69.61 -0.15 2.44 16 11 H 0.09 1.80 5.83 -51.93 -0.30 1.50 16 12 C -0.11 -1.92 5.30 -27.19 -0.14 -2.07 16 13 C -0.14 -2.62 6.41 -24.76 -0.16 -2.77 16 14 C 0.15 3.27 4.22 -4.66 -0.02 3.25 16 15 N -0.60 -14.54 2.14 -175.08 -0.37 -14.91 16 16 C -0.26 -7.43 9.92 -15.06 -0.15 -7.58 16 17 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 18 C 0.04 1.13 5.28 -17.43 -0.09 1.03 16 19 N -0.90 -27.61 13.97 55.49 0.78 -26.83 16 20 Si 0.88 22.85 25.26 -169.99 -4.29 18.55 16 21 H -0.29 -7.28 6.73 56.52 0.38 -6.90 16 22 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 23 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.14 2.94 6.11 -5.20 -0.03 2.91 16 25 C -0.14 -2.53 4.91 -30.19 -0.15 -2.67 16 26 N -0.26 -3.26 11.67 33.42 0.39 -2.87 16 27 N -0.28 -2.65 3.70 -63.85 -0.24 -2.88 16 28 C 0.09 0.38 11.11 59.85 0.66 1.05 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.40 7.35 -51.93 -0.38 0.02 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.31 6.86 -51.93 -0.36 -0.04 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.16 1.82 7.47 -52.48 -0.39 1.43 16 37 H 0.40 5.34 8.17 -40.82 -0.33 5.01 16 38 H 0.05 0.72 7.81 -51.93 -0.41 0.32 16 39 H 0.07 1.39 6.83 -51.92 -0.35 1.03 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.04 1.05 3.40 -51.93 -0.18 0.87 16 43 H 0.03 0.65 6.88 -51.93 -0.36 0.29 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.07 1.43 7.99 -51.93 -0.42 1.01 16 46 H 0.03 0.73 8.13 -51.93 -0.42 0.31 16 47 H 0.06 1.22 6.93 -51.93 -0.36 0.86 16 48 H 0.05 0.86 7.90 -51.93 -0.41 0.45 16 49 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 50 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.09 0.19 6.87 -51.93 -0.36 -0.17 16 LS Contribution 394.48 15.07 5.94 5.94 Total: -1.00 -34.50 394.48 -7.80 -42.30 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.41 Total: 1.53 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.40 Total: 0.53 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.27 Total: -58.58 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.29 Total: 18.55 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.50 -7.80 -42.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052369777.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.526 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds