Wall clock time and date at job start Tue Mar 31 2020 19:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47288 * 2 1 4 4 C 1.50701 * 109.46837 * 120.00275 * 2 1 3 5 5 C 1.35366 * 126.38849 * 325.02379 * 4 2 1 6 6 C 1.41502 * 105.50637 * 179.73976 * 5 4 2 7 7 C 1.47710 * 126.51864 * 179.97438 * 6 5 4 8 8 O 1.21578 * 119.99689 * 359.97438 * 7 6 5 9 9 N 1.34767 * 120.00068 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00251 * 179.97438 * 9 7 6 11 11 H 1.09006 * 110.21095 * 36.93323 * 10 9 7 12 12 C 1.50124 * 110.25481 * 159.01769 * 10 9 7 13 13 C 1.54839 * 110.82224 * 216.65552 * 12 10 9 14 14 C 1.54900 * 110.14087 * 321.13807 * 13 12 10 15 15 N 1.43437 * 116.07778 * 318.63380 * 14 13 12 16 16 C 1.36938 * 120.53795 * 271.59398 * 15 14 13 17 17 H 1.08001 * 120.00089 * 140.20812 * 16 15 14 18 18 C 1.38814 * 119.99967 * 320.20263 * 16 15 14 19 19 N 1.31613 * 119.99981 * 156.34340 * 18 16 15 20 20 Si 1.86793 * 119.99984 * 336.35101 * 18 16 15 21 21 H 1.48498 * 109.47493 * 95.57012 * 20 18 16 22 22 H 1.48501 * 109.47023 * 215.56886 * 20 18 16 23 23 H 1.48502 * 109.47269 * 335.56800 * 20 18 16 24 24 C 1.50172 * 118.92288 * 91.57002 * 15 14 13 25 25 C 1.46237 * 107.53314 * 289.58773 * 24 15 14 26 26 N 1.31806 * 106.96001 * 359.97438 * 6 5 4 27 27 N 1.28465 * 110.07702 * 0.02562 * 26 6 5 28 28 C 1.46501 * 124.88468 * 179.97438 * 27 26 6 29 29 H 1.09002 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47266 * 299.99829 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.00052 * 1 2 3 32 32 H 1.09005 * 109.46822 * 240.00009 * 2 1 3 33 33 H 1.09000 * 109.46933 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47033 * 299.99958 * 3 2 1 35 35 H 1.09001 * 109.46827 * 59.99902 * 3 2 1 36 36 H 1.08004 * 127.24430 * 359.75578 * 5 4 2 37 37 H 0.97003 * 120.00191 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.20924 * 337.00663 * 12 10 9 39 39 H 1.09010 * 109.20955 * 96.31006 * 12 10 9 40 40 H 1.08995 * 109.36020 * 200.92452 * 13 12 10 41 41 H 1.09002 * 109.24365 * 81.26788 * 13 12 10 42 42 H 1.09000 * 108.15899 * 196.92524 * 14 13 12 43 43 H 1.09000 * 108.00598 * 80.22308 * 14 13 12 44 44 H 0.96994 * 120.00456 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.84400 * 170.08591 * 24 15 14 46 46 H 1.08992 * 109.90169 * 49.13294 * 24 15 14 47 47 H 1.09001 * 108.52193 * 297.16976 * 25 24 15 48 48 H 1.09002 * 108.40154 * 179.56454 * 25 24 15 49 49 H 1.08999 * 109.47093 * 270.02485 * 28 27 26 50 50 H 1.09002 * 109.47240 * 30.02805 * 28 27 26 51 51 H 1.09002 * 109.47133 * 150.02252 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.4581 -0.6969 2.4562 6 6 2.2850 -1.5067 3.2703 7 6 2.0839 -1.8085 4.7022 8 8 1.1297 -1.3419 5.2936 9 7 2.9582 -2.6011 5.3530 10 6 2.7592 -2.9000 6.7733 11 1 1.6965 -3.0109 6.9895 12 6 3.5022 -4.1487 7.1507 13 6 2.6989 -4.9760 8.1841 14 6 2.0100 -4.0336 9.2023 15 7 2.7929 -2.9240 9.6642 16 6 3.6079 -3.0545 10.7569 17 1 4.5827 -2.5895 10.7621 18 6 3.1811 -3.7842 11.8579 19 7 4.0632 -4.3070 12.6830 20 14 1.3549 -4.0244 12.1684 21 1 0.9229 -5.3260 11.5987 22 1 1.0957 -4.0137 13.6305 23 1 0.5941 -2.9246 11.5227 24 6 2.7046 -1.6171 8.9298 25 6 3.3605 -1.7943 7.6348 26 7 3.2688 -1.9405 2.5079 27 7 3.1357 -1.4844 1.3143 28 6 4.0497 -1.7634 0.2039 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 0.5580 -0.1776 2.7507 37 1 3.7194 -2.9738 4.8811 38 1 3.6663 -4.7520 6.2579 39 1 4.4661 -3.8763 7.5807 40 1 3.3749 -5.6476 8.7133 41 1 1.9411 -5.5621 7.6642 42 1 1.7163 -4.6261 10.0688 43 1 1.1048 -3.6411 8.7391 44 1 3.7651 -4.8172 13.4522 45 1 3.2126 -0.8381 9.4983 46 1 1.6597 -1.3448 8.7812 47 1 4.4121 -2.0233 7.8078 48 1 3.2977 -0.8547 7.0859 49 1 4.8355 -1.0084 0.1816 50 1 4.4961 -2.7486 0.3396 51 1 3.4975 -1.7411 -0.7356 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052369777.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:36 Heat of formation + Delta-G solvation = 40.320423 kcal Electronic energy + Delta-G solvation = -29475.030284 eV Core-core repulsion = 25603.876732 eV Total energy + Delta-G solvation = -3871.153553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.74557 -41.03344 -39.30369 -36.70890 -36.35568 -34.54761 -34.08864 -33.44466 -32.37444 -30.61797 -28.69636 -28.02104 -27.82454 -25.90275 -25.12500 -24.09165 -23.48742 -21.71212 -21.50883 -21.23650 -20.31754 -18.49434 -18.35606 -17.70356 -17.46388 -17.30865 -16.69875 -16.28290 -15.94434 -15.57554 -15.54373 -15.22888 -14.98774 -14.89176 -14.71757 -14.62391 -14.27113 -13.97208 -13.86716 -13.54430 -13.52595 -13.39352 -13.21537 -12.99630 -12.78631 -12.60073 -12.52998 -12.30266 -12.11009 -12.03100 -11.90707 -11.76918 -11.76369 -11.62281 -11.40843 -11.28783 -11.11710 -10.54872 -10.25751 -9.95667 -9.92876 -8.68639 -8.20110 -5.58651 0.51006 1.10463 1.30796 1.40559 1.53340 1.54494 2.15101 2.36212 2.43211 3.03625 3.27004 3.31874 3.50914 3.79821 3.83878 3.94533 4.07818 4.14197 4.19156 4.32954 4.37944 4.38884 4.41159 4.46079 4.49344 4.61694 4.67585 4.68257 4.73037 4.82668 4.83229 4.87616 4.98884 5.00422 5.00825 5.01661 5.09840 5.15566 5.17705 5.29794 5.32226 5.38287 5.41481 5.43738 5.44392 5.56852 5.85210 5.97670 6.18439 6.46527 6.90222 7.01438 7.18170 7.63396 8.12378 8.99423 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026969 B = 0.002365 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.994788 B =11837.635937 C =12177.838987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.019 4.019 3 C -0.143 4.143 4 C 0.031 3.969 5 C -0.198 4.198 6 C -0.041 4.041 7 C 0.600 3.400 8 O -0.570 6.570 9 N -0.698 5.698 10 C 0.160 3.840 11 H 0.077 0.923 12 C -0.104 4.104 13 C -0.132 4.132 14 C 0.137 3.863 15 N -0.610 5.610 16 C -0.251 4.251 17 H 0.041 0.959 18 C -0.012 4.012 19 N -0.942 5.942 20 Si 0.937 3.063 21 H -0.275 1.275 22 H -0.306 1.306 23 H -0.267 1.267 24 C 0.141 3.859 25 C -0.128 4.128 26 N -0.272 5.272 27 N -0.274 5.274 28 C 0.071 3.929 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.154 0.846 37 H 0.413 0.587 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.021 0.979 43 H 0.043 0.957 44 H 0.263 0.737 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.101 0.899 50 H 0.104 0.896 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 6.824 -35.165 35.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 C -0.200 4.200 4 C -0.094 4.094 5 C -0.226 4.226 6 C -0.199 4.199 7 C 0.385 3.615 8 O -0.448 6.448 9 N -0.349 5.349 10 C 0.056 3.944 11 H 0.095 0.905 12 C -0.142 4.142 13 C -0.172 4.172 14 C 0.010 3.990 15 N -0.334 5.334 16 C -0.381 4.381 17 H 0.059 0.941 18 C -0.209 4.209 19 N -0.586 5.586 20 Si 0.766 3.234 21 H -0.202 1.202 22 H -0.234 1.234 23 H -0.192 1.192 24 C 0.018 3.982 25 C -0.168 4.168 26 N -0.109 5.109 27 N -0.062 5.062 28 C -0.068 4.068 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.172 0.828 37 H 0.249 0.751 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.039 0.961 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.057 0.943 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.369 6.387 -34.651 35.314 hybrid contribution -0.860 0.012 1.048 1.356 sum -3.228 6.399 -33.603 34.358 Atomic orbital electron populations 1.21850 0.92896 1.02358 1.03154 1.19847 0.96842 0.95657 0.91577 1.21846 1.01168 0.94018 1.03012 1.21806 0.90129 0.99101 0.98401 1.21581 1.03453 1.05342 0.92270 1.21718 0.97609 1.05972 0.94579 1.17222 0.81866 0.78020 0.84357 1.90772 1.32075 1.53584 1.68339 1.45939 1.28501 1.49724 1.10715 1.20107 1.00364 0.95141 0.78775 0.90458 1.21561 0.98846 0.95067 0.98681 1.22652 0.99818 0.98002 0.96763 1.20813 0.93257 0.89554 0.95367 1.44291 1.52272 1.05935 1.30886 1.18565 0.95379 1.31565 0.92619 0.94090 1.26057 1.00494 0.98572 0.95786 1.69991 1.35168 1.36149 1.17267 0.85935 0.83645 0.78469 0.75389 1.20210 1.23440 1.19171 1.20437 0.98344 0.87640 0.91816 1.21142 1.00663 0.98500 0.96460 1.73455 1.23296 1.21466 0.92696 1.45779 1.19727 1.32999 1.07739 1.22647 0.93206 1.05323 0.85591 0.92798 0.92888 0.89679 0.87352 0.92497 0.89614 0.93398 0.82787 0.75063 0.90101 0.92158 0.93199 0.90288 0.96057 0.93869 0.92793 0.91845 0.94318 0.92203 0.92828 0.88043 0.87758 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.78 71.98 0.63 -0.62 16 2 C -0.02 -0.16 3.10 -11.54 -0.04 -0.20 16 3 C -0.14 -1.05 9.18 71.98 0.66 -0.39 16 4 C 0.03 0.50 5.84 41.40 0.24 0.74 16 5 C -0.20 -4.70 9.96 22.41 0.22 -4.48 16 6 C -0.04 -1.13 7.13 42.46 0.30 -0.82 16 7 C 0.60 19.66 7.68 86.75 0.67 20.32 16 8 O -0.57 -22.63 16.64 -3.96 -0.07 -22.69 16 9 N -0.70 -20.62 5.01 -450.73 -2.26 -22.87 16 10 C 0.16 5.40 2.17 43.91 0.10 5.50 16 11 H 0.08 2.92 5.83 -2.38 -0.01 2.91 16 12 C -0.10 -3.37 5.30 30.30 0.16 -3.21 16 13 C -0.13 -4.87 6.41 31.87 0.20 -4.66 16 14 C 0.14 6.08 4.22 87.59 0.37 6.45 16 15 N -0.61 -29.70 2.14 -707.83 -1.51 -31.22 16 16 C -0.25 -14.49 9.92 84.03 0.83 -13.65 16 17 H 0.04 2.60 8.06 -2.91 -0.02 2.57 16 18 C -0.01 -0.71 5.28 84.86 0.45 -0.26 16 19 N -0.94 -59.36 13.97 21.65 0.30 -59.06 16 20 Si 0.94 47.96 25.26 68.60 1.73 49.69 16 21 H -0.28 -13.47 6.73 99.48 0.67 -12.80 16 22 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 23 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 24 C 0.14 5.97 6.11 83.58 0.51 6.48 16 25 C -0.13 -4.70 4.91 28.36 0.14 -4.56 16 26 N -0.27 -6.30 11.67 -48.18 -0.56 -6.87 16 27 N -0.27 -4.42 3.70 -355.92 -1.32 -5.73 16 28 C 0.07 0.36 11.11 127.77 1.42 1.78 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.60 7.35 -2.39 -0.02 0.58 16 31 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.11 0.31 6.86 -2.38 -0.02 0.30 16 33 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 34 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 36 H 0.15 3.66 7.47 -2.91 -0.02 3.64 16 37 H 0.41 10.35 8.17 -92.71 -0.76 9.59 16 38 H 0.08 2.14 7.81 -2.39 -0.02 2.13 16 39 H 0.06 2.17 6.83 -2.38 -0.02 2.15 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.02 1.04 3.40 -2.39 -0.01 1.03 16 43 H 0.04 1.80 6.88 -2.39 -0.02 1.78 16 44 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 45 H 0.06 2.70 7.99 -2.39 -0.02 2.68 16 46 H 0.04 1.62 8.13 -2.39 -0.02 1.60 16 47 H 0.06 2.26 6.93 -2.39 -0.02 2.24 16 48 H 0.05 1.91 7.90 -2.39 -0.02 1.90 16 49 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 50 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.13 -0.13 6.87 -2.39 -0.02 -0.15 16 Total: -1.00 -77.16 394.48 3.33 -73.82 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.14 Total: 16.51 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 6.87 Total: 8.41 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -5.34 Total: -125.75 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.07 Total: -22.69 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.73 Total: 49.69 kcal Total: -77.16 3.33 -73.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052369777.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.145 kcal (2) G-P(sol) polarization free energy of solvation -77.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds