Wall clock time and date at job start Tue Mar 31 2020 19:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46660 * 2 1 4 4 C 1.50700 * 109.46848 * 179.97438 * 3 2 1 5 5 C 1.38047 * 126.29324 * 269.99637 * 4 3 2 6 6 C 1.47429 * 126.41215 * 359.97438 * 5 4 3 7 7 O 1.21602 * 119.99923 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00056 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00360 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.20094 * 35.64102 * 9 8 6 11 11 C 1.50129 * 109.21080 * 154.99860 * 9 8 6 12 12 C 1.52521 * 105.41551 * 218.03357 * 11 9 8 13 13 C 1.46240 * 114.27680 * 270.59232 * 12 11 9 14 14 N 1.50170 * 107.58691 * 58.37370 * 13 12 11 15 15 C 1.36936 * 120.53513 * 109.60798 * 14 13 12 16 16 H 1.08007 * 119.99894 * 320.24180 * 15 14 13 17 17 C 1.38808 * 120.00119 * 140.24463 * 15 14 13 18 18 N 1.31621 * 120.00243 * 156.34542 * 17 15 14 19 19 Si 1.86797 * 120.00084 * 336.34765 * 17 15 14 20 20 H 1.48500 * 109.47193 * 95.56814 * 19 17 15 21 21 H 1.48506 * 109.47159 * 215.57025 * 19 17 15 22 22 H 1.48499 * 109.47202 * 335.56425 * 19 17 15 23 23 C 1.43406 * 118.94951 * 289.71346 * 14 13 12 24 24 C 1.54840 * 109.21154 * 276.32792 * 9 8 6 25 25 C 1.41292 * 107.17121 * 180.24924 * 5 4 3 26 26 N 1.30446 * 108.02257 * 359.61865 * 25 5 4 27 27 N 1.34262 * 126.29114 * 90.02439 * 4 3 2 28 28 C 1.46495 * 125.75279 * 359.97438 * 27 4 3 29 29 H 1.09004 * 109.46979 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47277 * 300.00171 * 1 2 3 31 31 H 1.08998 * 109.47130 * 60.00569 * 1 2 3 32 32 H 1.08993 * 109.47277 * 239.99829 * 2 1 3 33 33 H 1.09001 * 109.46631 * 119.99480 * 2 1 3 34 34 H 1.08998 * 109.47701 * 59.99554 * 3 2 1 35 35 H 1.09001 * 109.47174 * 299.99148 * 3 2 1 36 36 H 0.97006 * 119.99624 * 0.02562 * 8 6 5 37 37 H 1.08994 * 110.24939 * 99.05937 * 11 9 8 38 38 H 1.09005 * 110.36925 * 337.06844 * 11 9 8 39 39 H 1.08997 * 108.52586 * 149.35103 * 12 11 9 40 40 H 1.09007 * 108.40543 * 31.74588 * 12 11 9 41 41 H 1.09002 * 109.84894 * 177.91592 * 13 12 11 42 42 H 1.08994 * 109.84646 * 298.83700 * 13 12 11 43 43 H 0.97003 * 120.00492 * 179.97438 * 18 17 15 44 44 H 1.09003 * 108.11554 * 329.72393 * 23 14 13 45 45 H 1.08994 * 107.96903 * 213.07465 * 23 14 13 46 46 H 1.09001 * 109.35460 * 320.99439 * 24 9 8 47 47 H 1.09002 * 109.35766 * 80.71448 * 24 9 8 48 48 H 1.07998 * 125.98852 * 179.73992 * 25 5 4 49 49 H 1.08994 * 109.47436 * 90.00096 * 28 27 4 50 50 H 1.09003 * 109.47101 * 210.00317 * 28 27 4 51 51 H 1.09002 * 109.47126 * 329.99576 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3636 1.4428 1.1136 6 6 3.9247 1.4437 2.5211 7 8 2.7383 1.4437 2.7880 8 7 4.8384 1.4433 3.5119 9 6 4.4023 1.4447 4.9105 10 1 3.4963 0.8459 5.0041 11 6 5.4813 0.8449 5.7649 12 6 4.7512 0.0246 6.8233 13 6 4.4114 0.7712 8.0340 14 7 3.5524 1.9329 7.6246 15 6 2.2210 1.9603 7.9438 16 1 1.6322 1.0570 7.8817 17 6 1.6282 3.1488 8.3471 18 7 0.3301 3.3169 8.2090 19 14 2.6728 4.5100 9.0857 20 1 3.0429 5.4809 8.0248 21 1 1.9010 5.2060 10.1464 22 1 3.9049 3.9250 9.6731 23 6 4.1478 3.0124 6.8919 24 6 4.0984 2.8986 5.3480 25 6 5.6987 1.4487 0.6514 26 7 5.6743 1.4434 -0.6529 27 7 4.3421 1.4429 -1.0812 28 6 3.8910 1.4427 -2.4750 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6765 1.9564 0.8899 35 1 1.6767 1.9563 -0.8901 36 1 5.7847 1.4429 3.2989 37 1 6.0697 1.6316 6.2368 38 1 6.1252 0.2007 5.1661 39 1 5.3814 -0.8197 7.1027 40 1 3.8309 -0.3618 6.3851 41 1 3.8621 0.1294 8.7227 42 1 5.3210 1.1342 8.5124 43 1 -0.0842 4.1473 8.4912 44 1 5.1924 3.0911 7.1935 45 1 3.6428 3.9339 7.1811 46 1 4.8390 3.5692 4.9122 47 1 3.1053 3.1809 4.9985 48 1 6.5843 1.4543 1.2695 49 1 3.7788 2.4703 -2.8207 50 1 4.6261 0.9291 -3.0947 51 1 2.9326 0.9285 -2.5467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052524314.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:52 Heat of formation + Delta-G solvation = 56.545880 kcal Electronic energy + Delta-G solvation = -30080.774417 eV Core-core repulsion = 26210.324453 eV Total energy + Delta-G solvation = -3870.449964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.61674 -39.33776 -37.69378 -35.46567 -34.53532 -33.49894 -32.76356 -31.23332 -30.91662 -30.37524 -27.47265 -26.66571 -26.14970 -24.22958 -23.29753 -22.36144 -21.85060 -20.59147 -20.31331 -19.40014 -19.31621 -17.52566 -16.46814 -16.07405 -15.91989 -15.74777 -15.17501 -15.00697 -14.71424 -14.51154 -14.31477 -13.89090 -13.77965 -13.58592 -13.28281 -13.10160 -13.02656 -12.81143 -12.77494 -12.53015 -12.34695 -11.85780 -11.79599 -11.73057 -11.60182 -11.39762 -11.08027 -10.83451 -10.75916 -10.69006 -10.45748 -10.34061 -10.16841 -9.95737 -9.60335 -9.58378 -9.49524 -9.39537 -8.77093 -8.49684 -8.32556 -6.66668 -5.91881 -3.34441 1.44732 2.11585 2.14958 3.38882 3.51808 3.57732 3.60197 3.71018 4.24361 4.31954 4.60658 4.68460 4.76605 4.82859 4.92730 4.96726 5.03162 5.11516 5.15983 5.25238 5.34285 5.38342 5.40218 5.50511 5.58181 5.60857 5.71627 5.79723 5.91876 5.98294 6.01530 6.07971 6.17341 6.20411 6.24678 6.25909 6.32829 6.38963 6.47686 6.66774 6.68264 6.73492 6.82042 6.88410 7.00142 7.06402 7.11160 7.39119 7.93092 8.17468 8.46024 8.67568 9.10030 9.80043 10.24413 11.23555 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.003193 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.894312 B = 8766.728264 C = 9560.166064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.067 4.067 4 C 0.159 3.841 5 C -0.290 4.290 6 C 0.587 3.413 7 O -0.535 6.535 8 N -0.726 5.726 9 C 0.159 3.841 10 H 0.095 0.905 11 C -0.120 4.120 12 C -0.130 4.130 13 C 0.135 3.865 14 N -0.600 5.600 15 C -0.266 4.266 16 H 0.075 0.925 17 C 0.040 3.960 18 N -0.896 5.896 19 Si 0.876 3.124 20 H -0.287 1.287 21 H -0.302 1.302 22 H -0.270 1.270 23 C 0.153 3.847 24 C -0.147 4.147 25 C 0.081 3.919 26 N -0.303 5.303 27 N -0.365 5.365 28 C 0.096 3.904 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.390 0.610 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.030 0.970 43 H 0.262 0.738 44 H 0.028 0.972 45 H 0.042 0.958 46 H 0.049 0.951 47 H 0.065 0.935 48 H 0.188 0.812 49 H 0.078 0.922 50 H 0.092 0.908 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.990 -5.690 -19.706 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.106 4.106 4 C 0.027 3.973 5 C -0.305 4.305 6 C 0.374 3.626 7 O -0.412 6.412 8 N -0.376 5.376 9 C 0.056 3.944 10 H 0.113 0.887 11 C -0.158 4.158 12 C -0.170 4.170 13 C 0.012 3.988 14 N -0.323 5.323 15 C -0.395 4.395 16 H 0.092 0.908 17 C -0.161 4.161 18 N -0.536 5.536 19 Si 0.706 3.294 20 H -0.215 1.215 21 H -0.230 1.230 22 H -0.195 1.195 23 C 0.025 3.975 24 C -0.189 4.189 25 C -0.107 4.107 26 N -0.122 5.122 27 N -0.145 5.145 28 C -0.045 4.045 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.223 0.777 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.205 0.795 49 H 0.096 0.904 50 H 0.111 0.889 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.632 -5.613 -20.666 23.481 hybrid contribution 0.633 1.013 0.818 1.448 sum 10.266 -4.600 -19.848 22.814 Atomic orbital electron populations 1.21745 0.94861 1.01932 1.02259 1.21375 0.96452 0.94811 1.02190 1.20590 0.85623 0.99316 1.05057 1.21561 0.94669 0.94869 0.86191 1.20166 0.92655 1.23604 0.94053 1.17198 0.85855 0.76103 0.83449 1.90796 1.16268 1.50168 1.83997 1.46201 1.08800 1.75838 1.06810 1.21141 0.98046 0.97973 0.77282 0.88716 1.21302 0.97310 0.99611 0.97543 1.20866 0.99921 0.98258 0.97911 1.20446 0.93968 0.90233 0.94178 1.44186 1.07183 1.20879 1.60064 1.18695 0.82683 0.97170 1.40909 0.90793 1.25520 0.94944 0.97928 0.97669 1.69910 1.10348 1.26130 1.47241 0.86916 0.81028 0.82358 0.79127 1.21452 1.23030 1.19463 1.20624 0.95397 0.92135 0.89361 1.23204 1.01460 0.94735 0.99521 1.23987 0.97279 0.97430 0.91965 1.77135 0.96154 1.25600 1.13310 1.48306 1.04038 1.55870 1.06273 1.21939 1.01290 1.03741 0.77511 0.92527 0.91658 0.92990 0.92891 0.90829 0.86608 0.90947 0.77700 0.91032 0.92027 0.93461 0.91638 0.91455 0.95158 0.92808 0.95357 0.93985 0.93237 0.91588 0.79539 0.90382 0.88945 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.11 -1.15 5.92 -26.73 -0.16 -1.31 16 3 C -0.07 -0.75 4.67 -27.88 -0.13 -0.88 16 4 C 0.16 1.97 6.26 -81.60 -0.51 1.46 16 5 C -0.29 -3.96 6.13 -105.06 -0.64 -4.60 16 6 C 0.59 9.53 7.76 -12.52 -0.10 9.43 16 7 O -0.53 -10.74 14.50 5.28 0.08 -10.67 16 8 N -0.73 -10.43 4.97 -55.33 -0.27 -10.71 16 9 C 0.16 2.73 2.22 -68.39 -0.15 2.58 16 10 H 0.09 2.01 6.26 -51.93 -0.33 1.68 16 11 C -0.12 -1.74 5.34 -28.40 -0.15 -1.89 16 12 C -0.13 -2.11 5.20 -30.19 -0.16 -2.27 16 13 C 0.14 2.59 6.11 -5.20 -0.03 2.56 16 14 N -0.60 -14.15 2.14 -175.11 -0.37 -14.52 16 15 C -0.27 -7.51 9.92 -15.06 -0.15 -7.66 16 16 H 0.07 2.26 8.06 -52.48 -0.42 1.84 16 17 C 0.04 1.18 5.28 -17.43 -0.09 1.09 16 18 N -0.90 -27.88 13.97 55.49 0.78 -27.10 16 19 Si 0.88 22.61 25.27 -169.99 -4.29 18.32 16 20 H -0.29 -7.28 6.74 56.52 0.38 -6.90 16 21 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 22 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.15 3.36 4.22 -4.68 -0.02 3.34 16 24 C -0.15 -2.92 5.98 -24.76 -0.15 -3.06 16 25 C 0.08 0.93 11.50 -16.98 -0.20 0.74 16 26 N -0.30 -3.71 12.50 30.86 0.39 -3.32 16 27 N -0.37 -3.98 3.98 -63.34 -0.25 -4.24 16 28 C 0.10 0.61 11.06 59.84 0.66 1.27 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.12 1.63 6.50 -51.93 -0.34 1.29 16 35 H 0.07 0.61 7.70 -51.93 -0.40 0.21 16 36 H 0.39 4.22 7.43 -40.82 -0.30 3.92 16 37 H 0.07 1.03 6.29 -51.93 -0.33 0.71 16 38 H 0.06 0.74 7.86 -51.93 -0.41 0.33 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.20 6.92 -51.93 -0.36 0.84 16 41 H 0.07 1.30 7.99 -51.93 -0.42 0.89 16 42 H 0.03 0.54 8.13 -51.93 -0.42 0.12 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 44 H 0.03 0.55 6.89 -51.93 -0.36 0.20 16 45 H 0.04 1.04 3.39 -51.93 -0.18 0.86 16 46 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 47 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 48 H 0.19 1.49 7.50 -52.49 -0.39 1.10 16 49 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.09 0.41 7.62 -51.93 -0.40 0.01 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -35.18 394.00 -8.05 -43.23 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -8.43 Total: 3.36 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -1.61 Total: -0.29 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.26 Total: -59.89 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.29 Total: 18.32 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.18 -8.05 -43.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052524314.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.780 kcal (2) G-P(sol) polarization free energy of solvation -35.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds