Wall clock time and date at job start Tue Mar 31 2020 19:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46660 * 2 1 4 4 C 1.50700 * 109.46848 * 179.97438 * 3 2 1 5 5 C 1.38047 * 126.29324 * 269.99637 * 4 3 2 6 6 C 1.47429 * 126.41215 * 359.97438 * 5 4 3 7 7 O 1.21602 * 119.99923 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00056 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00360 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.20094 * 35.64102 * 9 8 6 11 11 C 1.50129 * 109.21080 * 154.99860 * 9 8 6 12 12 C 1.52521 * 105.41551 * 218.03357 * 11 9 8 13 13 C 1.46240 * 114.27680 * 270.59232 * 12 11 9 14 14 N 1.50170 * 107.58691 * 58.37370 * 13 12 11 15 15 C 1.36936 * 120.53513 * 109.60798 * 14 13 12 16 16 H 1.08007 * 119.99894 * 320.24180 * 15 14 13 17 17 C 1.38808 * 120.00119 * 140.24463 * 15 14 13 18 18 N 1.31621 * 120.00243 * 156.34542 * 17 15 14 19 19 Si 1.86797 * 120.00084 * 336.34765 * 17 15 14 20 20 H 1.48500 * 109.47193 * 95.56814 * 19 17 15 21 21 H 1.48506 * 109.47159 * 215.57025 * 19 17 15 22 22 H 1.48499 * 109.47202 * 335.56425 * 19 17 15 23 23 C 1.43406 * 118.94951 * 289.71346 * 14 13 12 24 24 C 1.54840 * 109.21154 * 276.32792 * 9 8 6 25 25 C 1.41292 * 107.17121 * 180.24924 * 5 4 3 26 26 N 1.30446 * 108.02257 * 359.61865 * 25 5 4 27 27 N 1.34262 * 126.29114 * 90.02439 * 4 3 2 28 28 C 1.46495 * 125.75279 * 359.97438 * 27 4 3 29 29 H 1.09004 * 109.46979 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47277 * 300.00171 * 1 2 3 31 31 H 1.08998 * 109.47130 * 60.00569 * 1 2 3 32 32 H 1.08993 * 109.47277 * 239.99829 * 2 1 3 33 33 H 1.09001 * 109.46631 * 119.99480 * 2 1 3 34 34 H 1.08998 * 109.47701 * 59.99554 * 3 2 1 35 35 H 1.09001 * 109.47174 * 299.99148 * 3 2 1 36 36 H 0.97006 * 119.99624 * 0.02562 * 8 6 5 37 37 H 1.08994 * 110.24939 * 99.05937 * 11 9 8 38 38 H 1.09005 * 110.36925 * 337.06844 * 11 9 8 39 39 H 1.08997 * 108.52586 * 149.35103 * 12 11 9 40 40 H 1.09007 * 108.40543 * 31.74588 * 12 11 9 41 41 H 1.09002 * 109.84894 * 177.91592 * 13 12 11 42 42 H 1.08994 * 109.84646 * 298.83700 * 13 12 11 43 43 H 0.97003 * 120.00492 * 179.97438 * 18 17 15 44 44 H 1.09003 * 108.11554 * 329.72393 * 23 14 13 45 45 H 1.08994 * 107.96903 * 213.07465 * 23 14 13 46 46 H 1.09001 * 109.35460 * 320.99439 * 24 9 8 47 47 H 1.09002 * 109.35766 * 80.71448 * 24 9 8 48 48 H 1.07998 * 125.98852 * 179.73992 * 25 5 4 49 49 H 1.08994 * 109.47436 * 90.00096 * 28 27 4 50 50 H 1.09003 * 109.47101 * 210.00317 * 28 27 4 51 51 H 1.09002 * 109.47126 * 329.99576 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3636 1.4428 1.1136 6 6 3.9247 1.4437 2.5211 7 8 2.7383 1.4437 2.7880 8 7 4.8384 1.4433 3.5119 9 6 4.4023 1.4447 4.9105 10 1 3.4963 0.8459 5.0041 11 6 5.4813 0.8449 5.7649 12 6 4.7512 0.0246 6.8233 13 6 4.4114 0.7712 8.0340 14 7 3.5524 1.9329 7.6246 15 6 2.2210 1.9603 7.9438 16 1 1.6322 1.0570 7.8817 17 6 1.6282 3.1488 8.3471 18 7 0.3301 3.3169 8.2090 19 14 2.6728 4.5100 9.0857 20 1 3.0429 5.4809 8.0248 21 1 1.9010 5.2060 10.1464 22 1 3.9049 3.9250 9.6731 23 6 4.1478 3.0124 6.8919 24 6 4.0984 2.8986 5.3480 25 6 5.6987 1.4487 0.6514 26 7 5.6743 1.4434 -0.6529 27 7 4.3421 1.4429 -1.0812 28 6 3.8910 1.4427 -2.4750 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6765 1.9564 0.8899 35 1 1.6767 1.9563 -0.8901 36 1 5.7847 1.4429 3.2989 37 1 6.0697 1.6316 6.2368 38 1 6.1252 0.2007 5.1661 39 1 5.3814 -0.8197 7.1027 40 1 3.8309 -0.3618 6.3851 41 1 3.8621 0.1294 8.7227 42 1 5.3210 1.1342 8.5124 43 1 -0.0842 4.1473 8.4912 44 1 5.1924 3.0911 7.1935 45 1 3.6428 3.9339 7.1811 46 1 4.8390 3.5692 4.9122 47 1 3.1053 3.1809 4.9985 48 1 6.5843 1.4543 1.2695 49 1 3.7788 2.4703 -2.8207 50 1 4.6261 0.9291 -3.0947 51 1 2.9326 0.9285 -2.5467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052524314.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:50 Heat of formation + Delta-G solvation = 32.025247 kcal Electronic energy + Delta-G solvation = -30081.837712 eV Core-core repulsion = 26210.324453 eV Total energy + Delta-G solvation = -3871.513259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.53300 -40.69565 -39.18736 -36.48916 -36.00266 -34.57647 -34.19567 -33.08541 -32.29233 -31.48245 -28.55488 -27.69612 -27.45249 -25.75471 -25.03343 -23.52817 -22.72325 -21.85183 -21.55635 -20.94729 -20.44009 -18.55684 -18.45952 -17.61089 -16.91059 -16.83652 -16.62387 -16.16782 -15.92070 -15.86533 -15.54993 -15.20979 -15.04324 -14.86764 -14.66392 -14.45306 -14.15608 -14.08054 -13.74939 -13.56323 -13.52024 -13.49797 -13.24539 -13.16410 -12.65950 -12.47721 -12.36166 -12.24036 -12.17920 -12.04638 -11.93522 -11.73503 -11.59154 -11.56760 -11.44066 -11.23222 -10.74827 -10.55103 -10.39671 -10.00612 -9.56322 -8.63535 -8.18502 -5.57707 0.47741 1.16670 1.32462 1.38829 1.40379 1.53548 2.40629 2.44814 2.52365 3.03841 3.39124 3.44445 3.51412 3.84995 3.90862 3.98581 4.05614 4.10879 4.17023 4.22632 4.37308 4.38371 4.40775 4.45487 4.51598 4.56028 4.62490 4.63286 4.73501 4.75349 4.85904 4.87359 4.91917 4.94876 5.02672 5.12641 5.14577 5.22300 5.28594 5.32956 5.37187 5.39372 5.43431 5.47417 5.63579 5.74124 5.86253 5.98417 6.20072 6.49626 6.78647 7.05741 7.47778 7.68020 8.12345 9.01707 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.003193 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.894312 B = 8766.728264 C = 9560.166064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 C -0.063 4.063 4 C 0.156 3.844 5 C -0.318 4.318 6 C 0.582 3.418 7 O -0.587 6.587 8 N -0.710 5.710 9 C 0.171 3.829 10 H 0.044 0.956 11 C -0.108 4.108 12 C -0.127 4.127 13 C 0.133 3.867 14 N -0.613 5.613 15 C -0.255 4.255 16 H 0.027 0.973 17 C -0.022 4.022 18 N -0.951 5.951 19 Si 0.949 3.051 20 H -0.281 1.281 21 H -0.308 1.308 22 H -0.249 1.249 23 C 0.147 3.853 24 C -0.141 4.141 25 C 0.090 3.910 26 N -0.318 5.318 27 N -0.359 5.359 28 C 0.083 3.917 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.412 0.588 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.031 0.969 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.261 0.739 44 H 0.069 0.931 45 H 0.014 0.986 46 H 0.080 0.920 47 H 0.012 0.988 48 H 0.221 0.779 49 H 0.093 0.907 50 H 0.105 0.895 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.359 -5.738 -21.538 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.102 4.102 4 C 0.022 3.978 5 C -0.333 4.333 6 C 0.371 3.629 7 O -0.468 6.468 8 N -0.362 5.362 9 C 0.066 3.934 10 H 0.062 0.938 11 C -0.146 4.146 12 C -0.166 4.166 13 C 0.011 3.989 14 N -0.337 5.337 15 C -0.385 4.385 16 H 0.045 0.955 17 C -0.218 4.218 18 N -0.595 5.595 19 Si 0.777 3.223 20 H -0.208 1.208 21 H -0.237 1.237 22 H -0.173 1.173 23 C 0.019 3.981 24 C -0.182 4.182 25 C -0.097 4.097 26 N -0.137 5.137 27 N -0.138 5.138 28 C -0.056 4.056 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.250 0.750 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.032 0.968 46 H 0.099 0.901 47 H 0.031 0.969 48 H 0.237 0.763 49 H 0.112 0.888 50 H 0.124 0.876 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.102 -5.683 -22.537 27.186 hybrid contribution -0.779 0.922 1.243 1.733 sum 13.324 -4.761 -21.293 25.566 Atomic orbital electron populations 1.21734 0.94290 1.02416 1.02147 1.21308 0.96909 0.94285 1.01668 1.20527 0.85318 0.99613 1.04774 1.21701 0.95108 0.94292 0.86724 1.20067 0.94312 1.26158 0.92720 1.17674 0.85291 0.75033 0.84870 1.90786 1.18606 1.52506 1.84899 1.45940 1.09803 1.75119 1.05334 1.20784 0.97630 0.95509 0.79435 0.93803 1.21292 0.96365 1.00229 0.96666 1.20757 0.99511 0.99395 0.96962 1.20659 0.93954 0.88664 0.95606 1.44337 1.05963 1.22642 1.60724 1.18549 0.84978 0.95506 1.39506 0.95480 1.26199 0.96024 1.00974 0.98614 1.70062 1.12604 1.27203 1.49585 0.85736 0.79579 0.79135 0.77838 1.20826 1.23657 1.17271 1.20734 0.96896 0.90243 0.90208 1.23100 0.99440 0.97253 0.98436 1.24439 0.97255 0.96078 0.91969 1.77108 0.96940 1.26092 1.13569 1.48642 1.03386 1.54397 1.07358 1.22380 1.02684 1.05336 0.75240 0.91768 0.94346 0.90475 0.90308 0.94259 0.90282 0.87737 0.75029 0.89301 0.88135 0.89493 0.95041 0.92671 0.91866 0.92996 0.91250 0.96831 0.90130 0.96893 0.76291 0.88838 0.87618 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.91 71.98 0.71 -2.18 16 2 C -0.10 -2.19 5.92 30.60 0.18 -2.01 16 3 C -0.06 -1.43 4.67 29.85 0.14 -1.29 16 4 C 0.16 3.75 6.26 42.14 0.26 4.01 16 5 C -0.32 -8.51 6.13 -20.15 -0.12 -8.63 16 6 C 0.58 19.45 7.76 86.66 0.67 20.12 16 7 O -0.59 -25.64 14.50 -4.04 -0.06 -25.70 16 8 N -0.71 -19.69 4.97 -447.22 -2.22 -21.91 16 9 C 0.17 5.84 2.22 44.70 0.10 5.94 16 10 H 0.04 1.98 6.26 -2.39 -0.01 1.96 16 11 C -0.11 -2.75 5.34 29.51 0.16 -2.60 16 12 C -0.13 -3.87 5.20 28.35 0.15 -3.72 16 13 C 0.13 4.88 6.11 83.58 0.51 5.39 16 14 N -0.61 -29.03 2.14 -707.91 -1.51 -30.54 16 15 C -0.26 -15.18 9.92 84.03 0.83 -14.34 16 16 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 17 C -0.02 -1.34 5.28 84.86 0.45 -0.89 16 18 N -0.95 -62.75 13.97 21.65 0.30 -62.45 16 19 Si 0.95 47.96 25.27 68.60 1.73 49.69 16 20 H -0.28 -13.79 6.74 99.48 0.67 -13.12 16 21 H -0.31 -15.68 7.11 99.48 0.71 -14.98 16 22 H -0.25 -11.62 7.11 99.48 0.71 -10.92 16 23 C 0.15 6.26 4.22 87.60 0.37 6.63 16 24 C -0.14 -5.58 5.98 31.87 0.19 -5.38 16 25 C 0.09 1.85 11.50 85.65 0.99 2.84 16 26 N -0.32 -6.98 12.50 -56.28 -0.70 -7.68 16 27 N -0.36 -7.04 3.98 -354.32 -1.41 -8.45 16 28 C 0.08 0.79 11.06 127.77 1.41 2.20 16 29 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 2.43 6.50 -2.39 -0.02 2.41 16 35 H 0.10 1.61 7.70 -2.39 -0.02 1.59 16 36 H 0.41 7.60 7.43 -92.70 -0.69 6.91 16 37 H 0.09 2.06 6.29 -2.39 -0.02 2.04 16 38 H 0.10 1.86 7.86 -2.38 -0.02 1.84 16 39 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.03 1.17 6.92 -2.38 -0.02 1.15 16 41 H 0.05 2.12 7.99 -2.39 -0.02 2.10 16 42 H 0.06 1.96 8.13 -2.39 -0.02 1.94 16 43 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 44 H 0.07 2.42 6.89 -2.39 -0.02 2.40 16 45 H 0.01 0.66 3.39 -2.39 -0.01 0.66 16 46 H 0.08 2.65 8.13 -2.39 -0.02 2.63 16 47 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.22 2.66 7.50 -2.91 -0.02 2.64 16 49 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.11 0.60 7.62 -2.39 -0.02 0.58 16 Total: -1.00 -85.74 394.00 3.33 -82.41 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.20 Total: 18.54 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 7.00 Total: 6.10 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -5.55 Total: -131.04 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.06 Total: -25.70 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.73 Total: 49.69 kcal Total: -85.74 3.33 -82.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052524314.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.432 kcal (2) G-P(sol) polarization free energy of solvation -85.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds