Wall clock time and date at job start Tue Mar 31 2020 19:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47352 * 2 1 4 4 C 1.50699 * 109.47047 * 119.99641 * 2 1 3 5 5 C 1.39678 * 126.06895 * 275.28156 * 4 2 1 6 6 C 1.38405 * 105.35990 * 180.09125 * 5 4 2 7 7 C 1.47165 * 126.88726 * 179.97438 * 6 5 4 8 8 O 1.21621 * 120.00228 * 174.90849 * 7 6 5 9 9 N 1.34779 * 119.99419 * 354.90379 * 7 6 5 10 10 C 1.46499 * 119.99532 * 175.30425 * 9 7 6 11 11 H 1.09001 * 109.49472 * 325.05009 * 10 9 7 12 12 C 1.52565 * 109.48868 * 205.00004 * 10 9 7 13 13 C 1.47101 * 114.32618 * 155.02425 * 12 10 9 14 14 C 1.54863 * 110.32400 * 62.79937 * 13 12 10 15 15 N 1.44575 * 109.60256 * 288.73932 * 14 13 12 16 16 C 1.36932 * 118.64176 * 270.72042 * 15 14 13 17 17 H 1.08007 * 119.99882 * 28.33786 * 16 15 14 18 18 C 1.38808 * 120.00475 * 208.33604 * 16 15 14 19 19 N 1.31626 * 120.00064 * 12.03078 * 18 16 15 20 20 Si 1.86803 * 120.00508 * 192.03562 * 18 16 15 21 21 H 1.48505 * 109.46642 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47046 * 119.99709 * 20 18 16 23 23 H 1.48497 * 109.47048 * 239.99870 * 20 18 16 24 24 C 1.47606 * 122.71569 * 90.70261 * 15 14 13 25 25 C 1.50883 * 109.48913 * 85.11658 * 10 9 7 26 26 N 1.36599 * 106.23168 * 359.65697 * 6 5 4 27 27 C 1.46505 * 125.19449 * 180.24845 * 26 6 5 28 28 N 1.28442 * 109.62141 * 0.22455 * 26 6 5 29 29 H 1.09008 * 109.47133 * 300.00739 * 1 2 3 30 30 H 1.09004 * 109.47159 * 60.00364 * 1 2 3 31 31 H 1.08999 * 109.47038 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47499 * 239.99458 * 2 1 3 33 33 H 1.09004 * 109.47266 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46868 * 299.99414 * 3 2 1 35 35 H 1.08991 * 109.47488 * 59.99727 * 3 2 1 36 36 H 1.07997 * 127.32132 * 359.97204 * 5 4 2 37 37 H 0.96996 * 120.00427 * 355.57762 * 9 7 6 38 38 H 1.09001 * 108.51147 * 276.27284 * 12 10 9 39 39 H 1.08995 * 108.51202 * 33.76761 * 12 10 9 40 40 H 1.08996 * 109.32575 * 183.06450 * 13 12 10 41 41 H 1.09003 * 109.32269 * 302.71741 * 13 12 10 42 42 H 1.09004 * 109.44633 * 48.77912 * 14 13 12 43 43 H 1.09000 * 109.45059 * 168.72062 * 14 13 12 44 44 H 0.96986 * 120.00469 * 180.02562 * 19 18 16 45 45 H 1.08993 * 108.94856 * 78.57290 * 24 15 14 46 46 H 1.09002 * 108.94882 * 197.29205 * 24 15 14 47 47 H 1.08997 * 109.36975 * 332.03952 * 25 10 9 48 48 H 1.08997 * 109.36599 * 91.65853 * 25 10 9 49 49 H 1.08999 * 109.47117 * 91.33908 * 27 26 6 50 50 H 1.09000 * 109.47196 * 211.34439 * 27 26 6 51 51 H 1.09003 * 109.46766 * 331.34422 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.2084 -0.1416 2.4941 6 6 2.6844 -1.1659 3.2940 7 6 3.0314 -1.0832 4.7217 8 8 3.3525 -2.0870 5.3287 9 7 2.9934 0.1051 5.3567 10 6 3.2382 0.1727 6.7995 11 1 2.8323 -0.7178 7.2794 12 6 2.5609 1.4136 7.3730 13 6 2.2277 1.3160 8.8025 14 6 3.5169 1.1586 9.6458 15 7 4.0752 -0.1585 9.4372 16 6 3.6658 -1.1813 10.2504 17 1 2.6794 -1.1601 10.6898 18 6 4.5184 -2.2455 10.5101 19 7 5.7896 -2.1666 10.1778 20 14 3.8618 -3.7897 11.3310 21 1 2.4107 -3.6274 11.6019 22 1 4.0712 -4.9544 10.4339 23 1 4.5816 -4.0145 12.6102 24 6 5.0680 -0.4465 8.3835 25 6 4.7232 0.2502 7.0550 26 7 2.7607 -2.2708 2.4944 27 6 3.2124 -3.5959 2.9261 28 7 2.3756 -1.9709 1.3064 29 1 -0.3634 0.5140 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 2.0161 0.8806 2.7846 37 1 2.8000 0.9149 4.8591 38 1 3.2236 2.2670 7.2297 39 1 1.6424 1.5956 6.8152 40 1 1.7016 2.2188 9.1127 41 1 1.5855 0.4503 8.9648 42 1 4.2432 1.9129 9.3427 43 1 3.2782 1.2883 10.7014 44 1 6.3852 -2.9102 10.3589 45 1 6.0478 -0.1055 8.7177 46 1 5.1059 -1.5231 8.2176 47 1 5.2562 -0.2405 6.2407 48 1 5.0272 1.2957 7.1053 49 1 2.3556 -4.1806 3.2610 50 1 3.6959 -4.1046 2.0921 51 1 3.9219 -3.4884 3.7467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052836409.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:00 Heat of formation + Delta-G solvation = 52.004772 kcal Electronic energy + Delta-G solvation = -29976.510546 eV Core-core repulsion = 26105.863665 eV Total energy + Delta-G solvation = -3870.646881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.63517 -39.57660 -37.60170 -36.14093 -34.74367 -33.04711 -32.36705 -31.51474 -30.73536 -29.94342 -27.41272 -26.84524 -26.04703 -24.39713 -23.40191 -23.12451 -22.23110 -20.43775 -20.29165 -19.21697 -19.13531 -17.67837 -16.60820 -16.33721 -16.13640 -15.76872 -15.12936 -14.86958 -14.48074 -14.34145 -14.15111 -14.09145 -13.72636 -13.55068 -13.42141 -13.16930 -12.91211 -12.67803 -12.54670 -12.42663 -12.31434 -11.90362 -11.63696 -11.62547 -11.41515 -11.34147 -11.07758 -10.89013 -10.78980 -10.64311 -10.39306 -10.20793 -10.07202 -9.95673 -9.73224 -9.67695 -9.56455 -9.19446 -8.96417 -8.75799 -8.33430 -6.58647 -5.71509 -3.18417 1.28546 2.34543 2.45752 3.33104 3.34690 3.41961 3.49558 3.50968 4.22019 4.53684 4.55551 4.74962 4.85709 4.94971 5.12802 5.14462 5.20612 5.21326 5.29464 5.38231 5.40246 5.45989 5.50496 5.54350 5.58309 5.61501 5.71739 5.75039 5.79618 5.99569 6.01833 6.08441 6.10781 6.21238 6.27495 6.39139 6.44361 6.49962 6.57759 6.65630 6.66951 6.78089 6.86231 6.98297 7.06231 7.49176 7.64241 7.79309 7.89737 8.01384 8.33426 8.55168 9.30829 9.96906 10.41801 11.35731 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.003039 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.219592 B = 9212.287825 C =10279.336954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.008 4.008 3 C -0.143 4.143 4 C 0.029 3.971 5 C -0.189 4.189 6 C -0.027 4.027 7 C 0.582 3.418 8 O -0.526 6.526 9 N -0.710 5.710 10 C 0.157 3.843 11 H 0.104 0.896 12 C -0.106 4.106 13 C -0.146 4.146 14 C 0.156 3.844 15 N -0.592 5.592 16 C -0.258 4.258 17 H 0.064 0.936 18 C 0.007 3.993 19 N -0.904 5.904 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.291 1.291 24 C 0.184 3.816 25 C -0.147 4.147 26 N -0.257 5.257 27 C 0.085 3.915 28 N -0.281 5.281 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.157 0.843 37 H 0.394 0.606 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.032 0.968 43 H 0.046 0.954 44 H 0.252 0.748 45 H 0.026 0.974 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.046 0.954 49 H 0.084 0.916 50 H 0.091 0.909 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.796 7.706 -19.156 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.127 4.127 5 C -0.218 4.218 6 C -0.156 4.156 7 C 0.367 3.633 8 O -0.402 6.402 9 N -0.361 5.361 10 C 0.054 3.946 11 H 0.122 0.878 12 C -0.145 4.145 13 C -0.186 4.186 14 C 0.028 3.972 15 N -0.313 5.313 16 C -0.388 4.388 17 H 0.082 0.918 18 C -0.192 4.192 19 N -0.549 5.549 20 Si 0.730 3.270 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.058 3.942 25 C -0.187 4.187 26 N -0.043 5.043 27 C -0.055 4.055 28 N -0.114 5.114 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.175 0.825 37 H 0.228 0.772 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.044 0.956 46 H 0.097 0.903 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.103 0.897 50 H 0.109 0.891 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.259 5.705 -19.221 21.323 hybrid contribution -0.416 0.155 0.607 0.752 sum -7.676 5.859 -18.614 20.969 Atomic orbital electron populations 1.21816 0.94031 1.02129 1.01998 1.19394 0.95550 0.94930 0.92978 1.21825 1.01394 0.94720 1.02172 1.21884 1.04419 0.90205 0.96217 1.21985 1.07451 0.99489 0.92865 1.21594 1.10671 0.88941 0.94384 1.16917 0.78130 0.84423 0.83873 1.90868 1.47262 1.35020 1.67022 1.46031 1.71557 1.07917 1.10564 1.20609 0.96568 1.00733 0.76681 0.87822 1.20571 0.99387 0.96705 0.97791 1.21450 1.01489 1.00761 0.94948 1.20706 0.91947 0.87847 0.96732 1.43672 1.49079 1.04086 1.34469 1.19206 0.96866 0.99288 1.23397 0.91808 1.25077 0.94841 0.99868 0.99364 1.70033 1.02649 1.31045 1.51123 0.86256 0.78298 0.83697 0.78709 1.20315 1.21585 1.21793 1.20941 0.90523 0.99779 0.82933 1.22455 0.94569 1.00442 1.01260 1.45545 1.44253 1.09654 1.04892 1.22381 1.02208 0.78583 1.02335 1.73097 1.17385 1.17742 1.03183 0.92332 0.92093 0.92587 0.89968 0.92361 0.92031 0.92134 0.82546 0.77183 0.92652 0.93309 0.92912 0.91926 0.94967 0.93554 0.93778 0.95618 0.90298 0.92572 0.93507 0.89701 0.89079 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.17 37.16 0.34 -0.74 16 2 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 3 C -0.14 -0.98 8.79 37.16 0.33 -0.65 16 4 C 0.03 0.34 6.13 -82.47 -0.51 -0.16 16 5 C -0.19 -2.20 9.65 -38.98 -0.38 -2.58 16 6 C -0.03 -0.38 6.96 -82.06 -0.57 -0.95 16 7 C 0.58 9.52 7.60 -12.64 -0.10 9.42 16 8 O -0.53 -10.59 14.43 5.26 0.08 -10.51 16 9 N -0.71 -10.25 4.91 -56.23 -0.28 -10.53 16 10 C 0.16 2.72 2.03 -69.22 -0.14 2.58 16 11 H 0.10 2.27 6.99 -51.93 -0.36 1.91 16 12 C -0.11 -1.58 4.69 -29.79 -0.14 -1.72 16 13 C -0.15 -2.43 5.74 -28.58 -0.16 -2.59 16 14 C 0.16 3.13 5.66 -4.09 -0.02 3.11 16 15 N -0.59 -14.43 2.27 -172.11 -0.39 -14.82 16 16 C -0.26 -7.02 9.44 -15.06 -0.14 -7.16 16 17 H 0.06 1.72 7.86 -52.48 -0.41 1.31 16 18 C 0.01 0.20 4.95 -17.43 -0.09 0.11 16 19 N -0.90 -26.50 10.91 55.49 0.61 -25.90 16 20 Si 0.90 22.24 29.57 -169.99 -5.03 17.21 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 24 C 0.18 4.43 4.64 -2.96 -0.01 4.41 16 25 C -0.15 -2.81 5.38 -27.31 -0.15 -2.95 16 26 N -0.26 -3.61 3.75 -63.88 -0.24 -3.85 16 27 C 0.08 1.01 10.81 59.85 0.65 1.66 16 28 N -0.28 -3.86 11.90 33.64 0.40 -3.46 16 29 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.38 7.37 -51.93 -0.38 0.00 16 36 H 0.16 1.36 7.08 -52.49 -0.37 0.99 16 37 H 0.39 4.34 7.67 -40.82 -0.31 4.03 16 38 H 0.05 0.76 7.36 -51.93 -0.38 0.37 16 39 H 0.05 0.63 8.04 -51.93 -0.42 0.21 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 43 H 0.05 0.95 7.99 -51.93 -0.41 0.53 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.03 0.67 8.01 -51.93 -0.42 0.25 16 46 H 0.08 2.20 6.37 -51.93 -0.33 1.87 16 47 H 0.06 1.09 7.85 -51.93 -0.41 0.68 16 48 H 0.05 0.81 7.32 -51.93 -0.38 0.43 16 49 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 51 H 0.11 1.52 6.34 -51.93 -0.33 1.19 16 LS Contribution 398.13 15.07 6.00 6.00 Total: -1.00 -32.39 398.13 -8.95 -41.35 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.70 Total: 3.11 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.40 Total: 1.40 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.10 Total: -58.56 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.39 -8.95 -41.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052836409.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.353 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds