Wall clock time and date at job start Tue Mar 31 2020 19:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47352 * 2 1 4 4 C 1.50699 * 109.47047 * 119.99641 * 2 1 3 5 5 C 1.39678 * 126.06895 * 275.28156 * 4 2 1 6 6 C 1.38405 * 105.35990 * 180.09125 * 5 4 2 7 7 C 1.47165 * 126.88726 * 179.97438 * 6 5 4 8 8 O 1.21621 * 120.00228 * 174.90849 * 7 6 5 9 9 N 1.34779 * 119.99419 * 354.90379 * 7 6 5 10 10 C 1.46499 * 119.99532 * 175.30425 * 9 7 6 11 11 H 1.09001 * 109.49472 * 325.05009 * 10 9 7 12 12 C 1.52565 * 109.48868 * 205.00004 * 10 9 7 13 13 C 1.47101 * 114.32618 * 155.02425 * 12 10 9 14 14 C 1.54863 * 110.32400 * 62.79937 * 13 12 10 15 15 N 1.44575 * 109.60256 * 288.73932 * 14 13 12 16 16 C 1.36932 * 118.64176 * 270.72042 * 15 14 13 17 17 H 1.08007 * 119.99882 * 28.33786 * 16 15 14 18 18 C 1.38808 * 120.00475 * 208.33604 * 16 15 14 19 19 N 1.31626 * 120.00064 * 12.03078 * 18 16 15 20 20 Si 1.86803 * 120.00508 * 192.03562 * 18 16 15 21 21 H 1.48505 * 109.46642 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47046 * 119.99709 * 20 18 16 23 23 H 1.48497 * 109.47048 * 239.99870 * 20 18 16 24 24 C 1.47606 * 122.71569 * 90.70261 * 15 14 13 25 25 C 1.50883 * 109.48913 * 85.11658 * 10 9 7 26 26 N 1.36599 * 106.23168 * 359.65697 * 6 5 4 27 27 C 1.46505 * 125.19449 * 180.24845 * 26 6 5 28 28 N 1.28442 * 109.62141 * 0.22455 * 26 6 5 29 29 H 1.09008 * 109.47133 * 300.00739 * 1 2 3 30 30 H 1.09004 * 109.47159 * 60.00364 * 1 2 3 31 31 H 1.08999 * 109.47038 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47499 * 239.99458 * 2 1 3 33 33 H 1.09004 * 109.47266 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46868 * 299.99414 * 3 2 1 35 35 H 1.08991 * 109.47488 * 59.99727 * 3 2 1 36 36 H 1.07997 * 127.32132 * 359.97204 * 5 4 2 37 37 H 0.96996 * 120.00427 * 355.57762 * 9 7 6 38 38 H 1.09001 * 108.51147 * 276.27284 * 12 10 9 39 39 H 1.08995 * 108.51202 * 33.76761 * 12 10 9 40 40 H 1.08996 * 109.32575 * 183.06450 * 13 12 10 41 41 H 1.09003 * 109.32269 * 302.71741 * 13 12 10 42 42 H 1.09004 * 109.44633 * 48.77912 * 14 13 12 43 43 H 1.09000 * 109.45059 * 168.72062 * 14 13 12 44 44 H 0.96986 * 120.00469 * 180.02562 * 19 18 16 45 45 H 1.08993 * 108.94856 * 78.57290 * 24 15 14 46 46 H 1.09002 * 108.94882 * 197.29205 * 24 15 14 47 47 H 1.08997 * 109.36975 * 332.03952 * 25 10 9 48 48 H 1.08997 * 109.36599 * 91.65853 * 25 10 9 49 49 H 1.08999 * 109.47117 * 91.33908 * 27 26 6 50 50 H 1.09000 * 109.47196 * 211.34439 * 27 26 6 51 51 H 1.09003 * 109.46766 * 331.34422 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.2084 -0.1416 2.4941 6 6 2.6844 -1.1659 3.2940 7 6 3.0314 -1.0832 4.7217 8 8 3.3525 -2.0870 5.3287 9 7 2.9934 0.1051 5.3567 10 6 3.2382 0.1727 6.7995 11 1 2.8323 -0.7178 7.2794 12 6 2.5609 1.4136 7.3730 13 6 2.2277 1.3160 8.8025 14 6 3.5169 1.1586 9.6458 15 7 4.0752 -0.1585 9.4372 16 6 3.6658 -1.1813 10.2504 17 1 2.6794 -1.1601 10.6898 18 6 4.5184 -2.2455 10.5101 19 7 5.7896 -2.1666 10.1778 20 14 3.8618 -3.7897 11.3310 21 1 2.4107 -3.6274 11.6019 22 1 4.0712 -4.9544 10.4339 23 1 4.5816 -4.0145 12.6102 24 6 5.0680 -0.4465 8.3835 25 6 4.7232 0.2502 7.0550 26 7 2.7607 -2.2708 2.4944 27 6 3.2124 -3.5959 2.9261 28 7 2.3756 -1.9709 1.3064 29 1 -0.3634 0.5140 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 2.0161 0.8806 2.7846 37 1 2.8000 0.9149 4.8591 38 1 3.2236 2.2670 7.2297 39 1 1.6424 1.5956 6.8152 40 1 1.7016 2.2188 9.1127 41 1 1.5855 0.4503 8.9648 42 1 4.2432 1.9129 9.3427 43 1 3.2782 1.2883 10.7014 44 1 6.3852 -2.9102 10.3589 45 1 6.0478 -0.1055 8.7177 46 1 5.1059 -1.5231 8.2176 47 1 5.2562 -0.2405 6.2407 48 1 5.0272 1.2957 7.1053 49 1 2.3556 -4.1806 3.2610 50 1 3.6959 -4.1046 2.0921 51 1 3.9219 -3.4884 3.7467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052836409.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:58 Heat of formation + Delta-G solvation = 31.724483 kcal Electronic energy + Delta-G solvation = -29977.389965 eV Core-core repulsion = 26105.863665 eV Total energy + Delta-G solvation = -3871.526301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.62731 -40.93382 -39.13878 -36.90885 -36.32754 -34.60736 -33.36356 -32.85668 -32.54142 -31.29588 -28.05235 -27.80786 -27.67639 -25.89617 -25.16086 -24.23399 -23.28983 -21.70672 -21.46556 -20.96553 -20.15342 -18.73884 -18.54618 -17.46306 -17.35393 -17.04732 -16.70896 -16.16433 -15.91715 -15.60359 -15.42446 -15.11875 -14.97428 -14.80944 -14.67104 -14.39086 -14.20490 -13.99940 -13.60457 -13.51224 -13.41178 -13.24128 -13.00050 -12.84233 -12.80199 -12.49566 -12.29081 -12.12983 -12.12033 -12.01974 -11.98199 -11.74190 -11.51600 -11.44574 -11.38297 -11.32600 -11.08887 -10.45784 -10.34769 -10.01099 -9.88834 -8.60349 -7.84424 -5.32638 0.19740 1.34215 1.40812 1.43939 1.52525 1.53445 2.13731 2.16201 2.50209 3.30565 3.38972 3.50031 3.70888 3.81591 3.92160 4.10090 4.13210 4.20583 4.28657 4.35020 4.38908 4.47184 4.47605 4.50224 4.53898 4.60518 4.70495 4.73672 4.85753 4.92743 4.96168 5.02584 5.07081 5.11483 5.16934 5.23962 5.24249 5.26593 5.36483 5.44494 5.48878 5.51995 5.54589 5.59788 5.63078 5.69996 5.71697 5.80768 6.43626 6.45740 7.03178 7.15228 7.20542 7.98161 8.36246 9.20209 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.003039 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.219592 B = 9212.287825 C =10279.336954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 C -0.140 4.140 4 C 0.026 3.974 5 C -0.169 4.169 6 C -0.052 4.052 7 C 0.581 3.419 8 O -0.575 6.575 9 N -0.691 5.691 10 C 0.167 3.833 11 H 0.053 0.947 12 C -0.104 4.104 13 C -0.132 4.132 14 C 0.146 3.854 15 N -0.604 5.604 16 C -0.257 4.257 17 H 0.064 0.936 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.957 3.043 21 H -0.266 1.266 22 H -0.298 1.298 23 H -0.288 1.288 24 C 0.197 3.803 25 C -0.132 4.132 26 N -0.270 5.270 27 C 0.085 3.915 28 N -0.298 5.298 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.192 0.808 37 H 0.417 0.583 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.037 0.963 42 H 0.049 0.951 43 H 0.038 0.962 44 H 0.246 0.754 45 H -0.004 1.004 46 H 0.029 0.971 47 H 0.046 0.954 48 H 0.076 0.924 49 H 0.088 0.912 50 H 0.112 0.888 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.970 10.951 -21.071 25.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.130 4.130 5 C -0.197 4.197 6 C -0.180 4.180 7 C 0.367 3.633 8 O -0.455 6.455 9 N -0.343 5.343 10 C 0.063 3.937 11 H 0.071 0.929 12 C -0.141 4.141 13 C -0.172 4.172 14 C 0.020 3.980 15 N -0.327 5.327 16 C -0.388 4.388 17 H 0.082 0.918 18 C -0.246 4.246 19 N -0.583 5.583 20 Si 0.786 3.214 21 H -0.190 1.190 22 H -0.226 1.226 23 H -0.215 1.215 24 C 0.071 3.929 25 C -0.172 4.172 26 N -0.057 5.057 27 C -0.055 4.055 28 N -0.132 5.132 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.209 0.791 37 H 0.255 0.745 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.014 0.986 46 H 0.047 0.953 47 H 0.065 0.935 48 H 0.094 0.906 49 H 0.106 0.894 50 H 0.131 0.869 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.475 9.021 -21.153 24.872 hybrid contribution 0.233 -0.804 1.148 1.421 sum -9.242 8.217 -20.005 23.519 Atomic orbital electron populations 1.21799 0.93126 1.01520 1.03195 1.19557 0.96193 0.95787 0.91334 1.21824 1.01001 0.93371 1.03598 1.22530 1.03353 0.89646 0.97467 1.22405 1.05077 1.00240 0.92024 1.21475 1.12834 0.90233 0.93507 1.17262 0.77188 0.84146 0.84706 1.90857 1.49505 1.36794 1.68307 1.45708 1.70747 1.08406 1.09433 1.20255 0.95057 1.00268 0.78120 0.92867 1.20529 1.01298 0.95656 0.96650 1.21290 0.98954 1.01481 0.95520 1.20975 0.93833 0.85866 0.97311 1.43843 1.49107 1.05409 1.34337 1.19497 0.96613 1.00100 1.22543 0.91792 1.25784 0.95179 1.02691 1.00949 1.70195 1.03678 1.31419 1.52964 0.85344 0.78330 0.80165 0.77516 1.18992 1.22572 1.21532 1.20564 0.89550 0.97276 0.85466 1.22236 0.96148 1.01118 0.97648 1.45717 1.44878 1.10060 1.05080 1.22377 1.02054 0.78560 1.02516 1.73102 1.17914 1.19077 1.03066 0.92036 0.90005 0.94114 0.90167 0.92978 0.90251 0.91139 0.79112 0.74541 0.89882 0.89917 0.89023 0.94450 0.93294 0.94367 0.94520 0.98643 0.95265 0.93477 0.90554 0.89355 0.86947 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.17 71.98 0.66 -1.05 16 2 C -0.01 -0.12 3.38 -11.54 -0.04 -0.16 16 3 C -0.14 -1.38 8.79 71.98 0.63 -0.75 16 4 C 0.03 0.57 6.13 43.05 0.26 0.83 16 5 C -0.17 -3.46 9.65 22.66 0.22 -3.24 16 6 C -0.05 -1.44 6.96 40.79 0.28 -1.16 16 7 C 0.58 19.01 7.60 86.59 0.66 19.67 16 8 O -0.57 -24.47 14.43 -4.10 -0.06 -24.53 16 9 N -0.69 -18.65 4.91 -450.05 -2.21 -20.86 16 10 C 0.17 5.61 2.03 44.16 0.09 5.70 16 11 H 0.05 2.39 6.99 -2.39 -0.02 2.37 16 12 C -0.10 -2.66 4.69 28.62 0.13 -2.52 16 13 C -0.13 -4.00 5.74 29.40 0.17 -3.84 16 14 C 0.15 5.69 5.66 87.37 0.49 6.18 16 15 N -0.60 -30.13 2.27 -698.43 -1.59 -31.71 16 16 C -0.26 -14.41 9.44 84.03 0.79 -13.62 16 17 H 0.06 3.52 7.86 -2.91 -0.02 3.49 16 18 C -0.05 -2.98 4.95 84.86 0.42 -2.56 16 19 N -0.94 -57.82 10.91 21.65 0.24 -57.58 16 20 Si 0.96 47.43 29.57 68.60 2.03 49.46 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 24 C 0.20 9.94 4.64 86.48 0.40 10.34 16 25 C -0.13 -4.99 5.38 30.22 0.16 -4.82 16 26 N -0.27 -7.60 3.75 -356.00 -1.33 -8.93 16 27 C 0.08 2.12 10.81 127.77 1.38 3.50 16 28 N -0.30 -7.93 11.90 -47.49 -0.57 -8.50 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.56 7.37 -2.39 -0.02 0.55 16 36 H 0.19 2.39 7.08 -2.91 -0.02 2.37 16 37 H 0.42 7.49 7.67 -92.71 -0.71 6.78 16 38 H 0.08 1.77 7.36 -2.39 -0.02 1.75 16 39 H 0.08 1.65 8.04 -2.39 -0.02 1.64 16 40 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.05 1.74 8.07 -2.38 -0.02 1.72 16 43 H 0.04 1.53 7.99 -2.39 -0.02 1.51 16 44 H 0.25 14.81 8.31 -92.72 -0.77 14.04 16 45 H 0.00 -0.25 8.01 -2.39 -0.02 -0.27 16 46 H 0.03 1.74 6.37 -2.39 -0.02 1.72 16 47 H 0.05 1.85 7.85 -2.39 -0.02 1.83 16 48 H 0.08 2.45 7.32 -2.39 -0.02 2.43 16 49 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.09 2.72 6.34 -2.39 -0.02 2.70 16 Total: -1.00 -76.55 398.13 3.44 -73.11 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.21 Total: 17.05 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 6.72 Total: 12.50 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -5.46 Total: -127.59 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.06 Total: -24.53 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -76.55 3.44 -73.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052836409.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.837 kcal (2) G-P(sol) polarization free energy of solvation -76.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds