Wall clock time and date at job start Tue Mar 31 2020 19:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 C 1.50690 * 109.47477 * 119.99927 * 2 1 3 5 5 N 1.30452 * 125.99406 * 300.02515 * 4 2 1 6 6 N 1.39927 * 108.89880 * 179.97438 * 5 4 2 7 7 C 1.46498 * 125.75530 * 180.02562 * 6 5 4 8 8 C 1.34264 * 108.49450 * 0.02562 * 6 5 4 9 9 C 1.38043 * 107.41457 * 359.76926 * 8 6 5 10 10 C 1.47432 * 126.41443 * 180.25654 * 9 8 6 11 11 O 1.21597 * 119.99890 * 180.12833 * 10 9 8 12 12 N 1.34776 * 119.99975 * 0.12331 * 10 9 8 13 13 C 1.46494 * 120.00102 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.20391 * 35.64431 * 13 12 10 15 15 C 1.50123 * 109.20928 * 155.00145 * 13 12 10 16 16 C 1.52525 * 105.41942 * 218.02895 * 15 13 12 17 17 C 1.46246 * 114.27824 * 270.59583 * 16 15 13 18 18 N 1.50171 * 107.52991 * 58.40511 * 17 16 15 19 19 C 1.36943 * 120.53425 * 109.56916 * 18 17 16 20 20 H 1.07996 * 119.99851 * 156.71098 * 19 18 17 21 21 C 1.38806 * 119.99954 * 336.70242 * 19 18 17 22 22 N 1.31622 * 120.00302 * 340.40830 * 21 19 18 23 23 Si 1.86804 * 119.99846 * 160.40405 * 21 19 18 24 24 H 1.48505 * 109.47081 * 90.00298 * 23 21 19 25 25 H 1.48496 * 109.47209 * 210.00226 * 23 21 19 26 26 H 1.48502 * 109.47224 * 330.00317 * 23 21 19 27 27 C 1.43433 * 118.92899 * 289.58878 * 18 17 16 28 28 C 1.54842 * 109.21216 * 276.32768 * 13 12 10 29 29 H 1.09002 * 109.46796 * 299.99876 * 1 2 3 30 30 H 1.08993 * 109.47619 * 59.99558 * 1 2 3 31 31 H 1.09001 * 109.46997 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47072 * 240.00718 * 2 1 3 33 33 H 1.09002 * 109.47288 * 60.00425 * 3 2 1 34 34 H 1.09004 * 109.47446 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47246 * 300.00429 * 3 2 1 36 36 H 1.08994 * 109.47619 * 89.96982 * 7 6 5 37 37 H 1.08995 * 109.47407 * 209.97969 * 7 6 5 38 38 H 1.09003 * 109.46972 * 329.97134 * 7 6 5 39 39 H 1.07998 * 126.28929 * 180.02562 * 8 6 5 40 40 H 0.97000 * 120.00046 * 0.02562 * 12 10 9 41 41 H 1.08994 * 110.25166 * 337.00647 * 15 13 12 42 42 H 1.09003 * 110.24536 * 99.05720 * 15 13 12 43 43 H 1.08995 * 108.52385 * 31.83583 * 16 15 13 44 44 H 1.08994 * 108.52493 * 149.51404 * 16 15 13 45 45 H 1.08994 * 109.84394 * 177.91212 * 17 16 15 46 46 H 1.08998 * 109.84605 * 298.83417 * 17 16 15 47 47 H 0.97000 * 120.00089 * 179.97438 * 22 21 19 48 48 H 1.08994 * 108.16199 * 213.29318 * 27 18 17 49 49 H 1.09007 * 108.15158 * 330.06317 * 27 18 17 50 50 H 1.08998 * 109.35959 * 320.99904 * 28 13 12 51 51 H 1.09002 * 109.35717 * 80.58153 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.7901 -0.3684 2.4657 6 7 2.4295 -1.2733 3.3202 7 6 2.4009 -1.2345 4.7844 8 6 3.0738 -2.1831 2.5720 9 6 2.8445 -1.8665 1.2481 10 6 3.3533 -2.5967 0.0728 11 8 3.0795 -2.2116 -1.0476 12 7 4.1219 -3.6911 0.2402 13 6 4.6270 -4.4171 -0.9277 14 1 4.8573 -3.7053 -1.7203 15 6 5.8780 -5.1548 -0.5476 16 6 6.7986 -5.0427 -1.7584 17 6 6.6382 -6.1172 -2.7374 18 7 5.2083 -6.1015 -3.1960 19 6 4.8889 -5.6962 -4.4645 20 1 3.9661 -6.0240 -4.9198 21 6 5.7511 -4.8638 -5.1648 22 7 6.6550 -4.1585 -4.5183 23 14 5.6286 -4.7446 -7.0250 24 1 4.6828 -3.6595 -7.3903 25 1 6.9683 -4.4449 -7.5912 26 1 5.1372 -6.0346 -7.5724 27 6 4.1826 -6.5176 -2.2839 28 6 3.5390 -5.3994 -1.4267 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.5546 -1.8180 5.1469 37 1 3.3268 -1.6546 5.1772 38 1 2.3001 -0.2019 5.1187 39 1 3.6600 -3.0128 2.9387 40 1 4.3400 -3.9985 1.1340 41 1 6.3408 -4.6895 0.3226 42 1 5.6512 -6.2010 -0.3418 43 1 6.6049 -4.0913 -2.2538 44 1 7.8313 -5.0463 -1.4098 45 1 7.3009 -5.9467 -3.5858 46 1 6.8690 -7.0768 -2.2748 47 1 7.2578 -3.5772 -5.0078 48 1 3.3932 -7.0022 -2.8584 49 1 4.6098 -7.2573 -1.6068 50 1 3.0348 -5.8459 -0.5697 51 1 2.8108 -4.8563 -2.0291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052930223.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:22 Heat of formation + Delta-G solvation = 59.538467 kcal Electronic energy + Delta-G solvation = -30193.673052 eV Core-core repulsion = 26323.352856 eV Total energy + Delta-G solvation = -3870.320196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.50378 -39.15860 -37.45966 -35.80035 -34.42960 -32.69093 -32.15451 -31.50742 -30.63016 -29.34935 -27.12688 -27.04435 -26.05082 -24.05786 -23.43807 -22.38924 -22.12047 -20.26245 -19.73577 -19.23790 -18.81815 -17.48447 -16.60569 -15.93972 -15.82538 -15.34179 -14.96658 -14.68898 -14.51305 -14.40830 -13.99609 -13.74945 -13.67973 -13.32595 -13.16346 -13.08097 -12.98570 -12.52790 -12.38148 -12.17308 -12.06870 -11.77161 -11.41383 -11.38081 -11.19027 -11.10853 -10.96433 -10.71237 -10.66084 -10.52099 -10.30411 -10.13168 -9.95605 -9.69403 -9.43942 -9.43349 -9.28566 -9.18848 -8.72480 -8.44506 -8.24387 -6.62804 -5.70359 -3.08624 1.46896 2.21039 2.23529 3.46121 3.53193 3.55137 3.71293 3.80083 4.19692 4.44374 4.60212 4.67392 4.78087 5.01525 5.04017 5.22127 5.28989 5.37787 5.43305 5.46564 5.56306 5.63129 5.64071 5.72721 5.83623 5.91164 5.95162 5.98128 6.08710 6.10384 6.32989 6.33461 6.34819 6.39625 6.46966 6.54966 6.60347 6.69804 6.78179 6.95054 6.98792 7.02923 7.12684 7.24392 7.29600 7.54155 7.65047 7.83201 8.03768 8.05596 8.51618 8.78069 9.28058 9.95609 10.47780 11.37496 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014275 B = 0.003268 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.990166 B = 8565.649008 C = 9738.288575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 C -0.138 4.138 4 C 0.142 3.858 5 N -0.300 5.300 6 N -0.367 5.367 7 C 0.099 3.901 8 C 0.091 3.909 9 C -0.277 4.277 10 C 0.585 3.415 11 O -0.530 6.530 12 N -0.727 5.727 13 C 0.158 3.842 14 H 0.103 0.897 15 C -0.120 4.120 16 C -0.129 4.129 17 C 0.165 3.835 18 N -0.588 5.588 19 C -0.248 4.248 20 H 0.067 0.933 21 C 0.004 3.996 22 N -0.900 5.900 23 Si 0.898 3.102 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.162 3.838 28 C -0.150 4.150 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.121 0.879 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.180 0.820 40 H 0.385 0.615 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.028 0.972 45 H 0.090 0.910 46 H 0.005 0.995 47 H 0.252 0.748 48 H 0.033 0.967 49 H 0.027 0.973 50 H 0.043 0.957 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.879 4.149 19.711 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.054 4.054 3 C -0.196 4.196 4 C -0.026 4.026 5 N -0.121 5.121 6 N -0.145 5.145 7 C -0.042 4.042 8 C -0.060 4.060 9 C -0.292 4.292 10 C 0.372 3.628 11 O -0.407 6.407 12 N -0.377 5.377 13 C 0.055 3.945 14 H 0.121 0.879 15 C -0.159 4.159 16 C -0.168 4.168 17 C 0.042 3.958 18 N -0.309 5.309 19 C -0.377 4.377 20 H 0.084 0.916 21 C -0.194 4.194 22 N -0.545 5.545 23 Si 0.729 3.271 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.032 3.968 28 C -0.193 4.193 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.139 0.861 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.197 0.803 40 H 0.218 0.782 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.122 0.878 44 H 0.047 0.953 45 H 0.108 0.892 46 H 0.023 0.977 47 H 0.062 0.938 48 H 0.051 0.949 49 H 0.045 0.955 50 H 0.061 0.939 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.519 5.351 19.737 21.464 hybrid contribution 0.495 -0.576 -0.582 0.957 sum -6.024 4.775 19.155 20.640 Atomic orbital electron populations 1.21763 0.94063 1.01910 1.01805 1.20010 0.95845 0.95722 0.93784 1.21766 1.01221 0.94798 1.01796 1.22413 0.93937 0.92987 0.93247 1.77122 1.20436 1.14260 1.00238 1.48270 1.38235 1.21121 1.06894 1.21925 1.03525 1.04901 0.73832 1.23028 0.96921 0.94958 0.91074 1.20484 1.12642 1.03371 0.92750 1.17252 0.78186 0.79943 0.87460 1.90749 1.57978 1.67187 1.24832 1.46352 1.52741 1.28638 1.09946 1.21233 0.92584 0.93993 0.86691 0.87908 1.21356 0.96089 0.99729 0.98681 1.20936 0.95648 1.05583 0.94670 1.20159 0.86348 0.92500 0.96823 1.44266 1.00344 1.76432 1.09886 1.19179 1.06079 1.23114 0.89373 0.91553 1.24868 0.99965 0.96414 0.98187 1.69956 1.23276 1.27671 1.33565 0.86353 0.76796 0.77731 0.86255 1.21512 1.21736 1.20730 1.20351 0.91761 0.93166 0.91486 1.23299 0.98122 0.98926 0.98924 0.92672 0.91959 0.92733 0.86109 0.92670 0.92675 0.91959 0.90462 0.89243 0.89064 0.80276 0.78209 0.92984 0.91990 0.87823 0.95310 0.89176 0.97669 0.93821 0.94903 0.95462 0.93856 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.18 37.16 0.34 -1.37 16 2 C -0.03 -0.48 3.26 -91.78 -0.30 -0.78 16 3 C -0.14 -1.74 9.17 37.16 0.34 -1.40 16 4 C 0.14 2.11 5.77 -82.02 -0.47 1.64 16 5 N -0.30 -4.08 12.50 33.89 0.42 -3.66 16 6 N -0.37 -3.85 3.98 -67.60 -0.27 -4.11 16 7 C 0.10 0.53 11.44 59.85 0.68 1.22 16 8 C 0.09 0.97 10.99 -16.56 -0.18 0.78 16 9 C -0.28 -4.08 6.13 -105.06 -0.64 -4.72 16 10 C 0.59 10.34 7.76 -12.52 -0.10 10.24 16 11 O -0.53 -11.67 14.23 5.28 0.08 -11.59 16 12 N -0.73 -11.40 4.96 -55.34 -0.27 -11.67 16 13 C 0.16 3.02 2.22 -68.39 -0.15 2.87 16 14 H 0.10 2.55 6.26 -51.93 -0.33 2.22 16 15 C -0.12 -2.09 5.34 -28.41 -0.15 -2.24 16 16 C -0.13 -2.72 5.02 -30.18 -0.15 -2.87 16 17 C 0.17 3.80 5.24 -5.20 -0.03 3.77 16 18 N -0.59 -14.43 2.60 -175.08 -0.46 -14.88 16 19 C -0.25 -6.80 9.63 -15.06 -0.14 -6.95 16 20 H 0.07 1.83 7.89 -52.49 -0.41 1.41 16 21 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 22 N -0.90 -25.23 9.43 55.49 0.52 -24.70 16 23 Si 0.90 22.02 29.60 -169.99 -5.03 16.99 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.16 3.41 5.18 -4.67 -0.02 3.39 16 28 C -0.15 -2.96 5.98 -24.76 -0.15 -3.11 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.12 2.08 5.60 -51.93 -0.29 1.79 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.18 1.14 7.46 -52.49 -0.39 0.75 16 40 H 0.39 4.52 7.40 -40.82 -0.30 4.22 16 41 H 0.05 0.78 7.85 -51.93 -0.41 0.37 16 42 H 0.06 1.03 6.28 -51.93 -0.33 0.70 16 43 H 0.10 2.60 5.29 -51.93 -0.27 2.32 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 2.32 6.05 -51.93 -0.31 2.01 16 46 H 0.01 0.11 8.13 -51.93 -0.42 -0.31 16 47 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 49 H 0.03 0.52 6.88 -51.93 -0.36 0.16 16 50 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 51 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 394.90 15.07 5.95 5.95 Total: -1.00 -33.25 394.90 -8.72 -41.97 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -8.45 Total: 5.24 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.21 Total: 0.47 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.05 Total: -59.03 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.25 -8.72 -41.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052930223.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.510 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds