Wall clock time and date at job start Tue Mar 31 2020 19:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 C 1.50690 * 109.47477 * 119.99927 * 2 1 3 5 5 N 1.30452 * 125.99406 * 300.02515 * 4 2 1 6 6 N 1.39927 * 108.89880 * 179.97438 * 5 4 2 7 7 C 1.46498 * 125.75530 * 180.02562 * 6 5 4 8 8 C 1.34264 * 108.49450 * 0.02562 * 6 5 4 9 9 C 1.38043 * 107.41457 * 359.76926 * 8 6 5 10 10 C 1.47432 * 126.41443 * 180.25654 * 9 8 6 11 11 O 1.21597 * 119.99890 * 180.12833 * 10 9 8 12 12 N 1.34776 * 119.99975 * 0.12331 * 10 9 8 13 13 C 1.46494 * 120.00102 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.20391 * 35.64431 * 13 12 10 15 15 C 1.50123 * 109.20928 * 155.00145 * 13 12 10 16 16 C 1.52525 * 105.41942 * 218.02895 * 15 13 12 17 17 C 1.46246 * 114.27824 * 270.59583 * 16 15 13 18 18 N 1.50171 * 107.52991 * 58.40511 * 17 16 15 19 19 C 1.36943 * 120.53425 * 109.56916 * 18 17 16 20 20 H 1.07996 * 119.99851 * 156.71098 * 19 18 17 21 21 C 1.38806 * 119.99954 * 336.70242 * 19 18 17 22 22 N 1.31622 * 120.00302 * 340.40830 * 21 19 18 23 23 Si 1.86804 * 119.99846 * 160.40405 * 21 19 18 24 24 H 1.48505 * 109.47081 * 90.00298 * 23 21 19 25 25 H 1.48496 * 109.47209 * 210.00226 * 23 21 19 26 26 H 1.48502 * 109.47224 * 330.00317 * 23 21 19 27 27 C 1.43433 * 118.92899 * 289.58878 * 18 17 16 28 28 C 1.54842 * 109.21216 * 276.32768 * 13 12 10 29 29 H 1.09002 * 109.46796 * 299.99876 * 1 2 3 30 30 H 1.08993 * 109.47619 * 59.99558 * 1 2 3 31 31 H 1.09001 * 109.46997 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47072 * 240.00718 * 2 1 3 33 33 H 1.09002 * 109.47288 * 60.00425 * 3 2 1 34 34 H 1.09004 * 109.47446 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47246 * 300.00429 * 3 2 1 36 36 H 1.08994 * 109.47619 * 89.96982 * 7 6 5 37 37 H 1.08995 * 109.47407 * 209.97969 * 7 6 5 38 38 H 1.09003 * 109.46972 * 329.97134 * 7 6 5 39 39 H 1.07998 * 126.28929 * 180.02562 * 8 6 5 40 40 H 0.97000 * 120.00046 * 0.02562 * 12 10 9 41 41 H 1.08994 * 110.25166 * 337.00647 * 15 13 12 42 42 H 1.09003 * 110.24536 * 99.05720 * 15 13 12 43 43 H 1.08995 * 108.52385 * 31.83583 * 16 15 13 44 44 H 1.08994 * 108.52493 * 149.51404 * 16 15 13 45 45 H 1.08994 * 109.84394 * 177.91212 * 17 16 15 46 46 H 1.08998 * 109.84605 * 298.83417 * 17 16 15 47 47 H 0.97000 * 120.00089 * 179.97438 * 22 21 19 48 48 H 1.08994 * 108.16199 * 213.29318 * 27 18 17 49 49 H 1.09007 * 108.15158 * 330.06317 * 27 18 17 50 50 H 1.08998 * 109.35959 * 320.99904 * 28 13 12 51 51 H 1.09002 * 109.35717 * 80.58153 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.7901 -0.3684 2.4657 6 7 2.4295 -1.2733 3.3202 7 6 2.4009 -1.2345 4.7844 8 6 3.0738 -2.1831 2.5720 9 6 2.8445 -1.8665 1.2481 10 6 3.3533 -2.5967 0.0728 11 8 3.0795 -2.2116 -1.0476 12 7 4.1219 -3.6911 0.2402 13 6 4.6270 -4.4171 -0.9277 14 1 4.8573 -3.7053 -1.7203 15 6 5.8780 -5.1548 -0.5476 16 6 6.7986 -5.0427 -1.7584 17 6 6.6382 -6.1172 -2.7374 18 7 5.2083 -6.1015 -3.1960 19 6 4.8889 -5.6962 -4.4645 20 1 3.9661 -6.0240 -4.9198 21 6 5.7511 -4.8638 -5.1648 22 7 6.6550 -4.1585 -4.5183 23 14 5.6286 -4.7446 -7.0250 24 1 4.6828 -3.6595 -7.3903 25 1 6.9683 -4.4449 -7.5912 26 1 5.1372 -6.0346 -7.5724 27 6 4.1826 -6.5176 -2.2839 28 6 3.5390 -5.3994 -1.4267 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.5546 -1.8180 5.1469 37 1 3.3268 -1.6546 5.1772 38 1 2.3001 -0.2019 5.1187 39 1 3.6600 -3.0128 2.9387 40 1 4.3400 -3.9985 1.1340 41 1 6.3408 -4.6895 0.3226 42 1 5.6512 -6.2010 -0.3418 43 1 6.6049 -4.0913 -2.2538 44 1 7.8313 -5.0463 -1.4098 45 1 7.3009 -5.9467 -3.5858 46 1 6.8690 -7.0768 -2.2748 47 1 7.2578 -3.5772 -5.0078 48 1 3.3932 -7.0022 -2.8584 49 1 4.6098 -7.2573 -1.6068 50 1 3.0348 -5.8459 -0.5697 51 1 2.8108 -4.8563 -2.0291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052930223.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:20 Heat of formation + Delta-G solvation = 37.689990 kcal Electronic energy + Delta-G solvation = -30194.620473 eV Core-core repulsion = 26323.352856 eV Total energy + Delta-G solvation = -3871.267617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.46607 -40.59921 -39.06224 -36.85236 -36.05476 -34.05578 -33.35144 -33.27095 -32.05322 -30.70610 -28.07148 -28.06182 -27.66636 -25.70442 -25.05290 -23.62741 -23.13867 -21.87196 -21.01787 -20.77905 -20.01637 -18.56950 -18.52091 -17.06539 -16.92853 -16.70669 -16.62739 -16.02805 -15.72233 -15.59072 -15.52428 -15.29336 -15.00721 -14.91712 -14.30076 -14.14016 -14.01106 -13.85629 -13.49581 -13.42459 -13.32615 -13.19933 -13.08389 -12.98580 -12.66491 -12.39498 -12.34673 -12.15274 -12.14469 -12.00510 -11.83816 -11.72515 -11.66335 -11.48873 -11.15591 -11.07630 -10.58134 -10.41023 -10.34369 -9.95366 -9.54440 -8.59628 -7.79858 -5.19212 0.56932 1.12309 1.46175 1.48431 1.49147 1.56770 2.41738 2.53867 2.56743 3.33204 3.35499 3.66344 3.67455 3.96096 4.06886 4.10494 4.15408 4.22715 4.32157 4.38324 4.45039 4.47635 4.53807 4.59182 4.64783 4.69536 4.73718 4.74330 4.81099 4.89433 4.92296 4.93744 4.94630 5.07226 5.12778 5.23401 5.27950 5.28996 5.34099 5.38746 5.48857 5.56251 5.59590 5.70484 5.77439 5.85601 5.95659 6.25504 6.46349 6.55587 6.83154 7.23171 7.51386 7.97145 8.44296 9.24187 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014275 B = 0.003268 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.990166 B = 8565.649008 C = 9738.288575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.039 4.039 3 C -0.130 4.130 4 C 0.124 3.876 5 N -0.318 5.318 6 N -0.358 5.358 7 C 0.087 3.913 8 C 0.125 3.875 9 C -0.320 4.320 10 C 0.582 3.418 11 O -0.589 6.589 12 N -0.710 5.710 13 C 0.172 3.828 14 H 0.037 0.963 15 C -0.105 4.105 16 C -0.124 4.124 17 C 0.167 3.833 18 N -0.602 5.602 19 C -0.261 4.261 20 H 0.056 0.944 21 C -0.043 4.043 22 N -0.914 5.914 23 Si 0.953 3.047 24 H -0.296 1.296 25 H -0.290 1.290 26 H -0.273 1.273 27 C 0.157 3.843 28 C -0.140 4.140 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.093 0.907 39 H 0.231 0.769 40 H 0.410 0.590 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.034 0.966 47 H 0.245 0.755 48 H 0.024 0.976 49 H 0.061 0.939 50 H 0.080 0.920 51 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.710 2.833 23.849 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.060 4.060 3 C -0.188 4.188 4 C -0.043 4.043 5 N -0.139 5.139 6 N -0.135 5.135 7 C -0.052 4.052 8 C -0.029 4.029 9 C -0.335 4.335 10 C 0.371 3.629 11 O -0.470 6.470 12 N -0.361 5.361 13 C 0.067 3.933 14 H 0.056 0.944 15 C -0.142 4.142 16 C -0.163 4.163 17 C 0.044 3.956 18 N -0.324 5.324 19 C -0.392 4.392 20 H 0.074 0.926 21 C -0.239 4.239 22 N -0.560 5.560 23 Si 0.782 3.218 24 H -0.223 1.223 25 H -0.216 1.216 26 H -0.198 1.198 27 C 0.028 3.972 28 C -0.182 4.182 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.144 0.856 38 H 0.112 0.888 39 H 0.247 0.753 40 H 0.248 0.752 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.043 0.957 49 H 0.079 0.921 50 H 0.098 0.902 51 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -6.359 4.019 23.958 25.111 hybrid contribution 0.412 -0.169 -1.739 1.795 sum -5.948 3.849 22.219 23.321 Atomic orbital electron populations 1.21689 0.92787 1.01424 1.02762 1.19928 0.96971 0.96226 0.92868 1.21698 1.00234 0.94056 1.02776 1.22437 0.94592 0.93518 0.93722 1.77055 1.21377 1.15556 0.99933 1.48733 1.36400 1.19824 1.08535 1.22429 1.06276 1.05937 0.70533 1.23614 0.95035 0.94965 0.89252 1.20302 1.15296 1.04441 0.93441 1.17750 0.77530 0.79983 0.87670 1.90733 1.60121 1.68721 1.27461 1.46011 1.52011 1.27883 1.10209 1.20739 0.93539 0.92592 0.86385 0.94432 1.21260 0.93926 1.01026 0.98011 1.20749 0.97625 1.02396 0.95538 1.20126 0.84896 0.94425 0.96166 1.44439 1.01813 1.76397 1.09791 1.19356 1.05725 1.22912 0.91167 0.92590 1.25497 1.00322 0.96642 1.01467 1.70139 1.23689 1.28005 1.34177 0.85501 0.76378 0.77515 0.82356 1.22347 1.21582 1.19841 1.20491 0.91096 0.93947 0.91658 1.23166 0.97457 0.98265 0.99292 0.91699 0.90880 0.93894 0.89771 0.91643 0.94077 0.90888 0.88711 0.85611 0.88788 0.75259 0.75232 0.89453 0.89676 0.92439 0.93609 0.92725 0.94793 0.94568 0.95726 0.92085 0.90201 0.96716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 9.18 71.98 0.66 -2.66 16 2 C -0.04 -1.21 3.26 -11.54 -0.04 -1.24 16 3 C -0.13 -3.41 9.17 71.98 0.66 -2.75 16 4 C 0.12 3.72 5.77 43.51 0.25 3.97 16 5 N -0.32 -8.19 12.50 -46.68 -0.58 -8.77 16 6 N -0.36 -6.23 3.98 -367.79 -1.46 -7.69 16 7 C 0.09 0.52 11.44 127.77 1.46 1.98 16 8 C 0.12 2.16 10.99 84.27 0.93 3.09 16 9 C -0.32 -9.15 6.13 -20.15 -0.12 -9.27 16 10 C 0.58 20.98 7.76 86.67 0.67 21.65 16 11 O -0.59 -28.06 14.23 -4.02 -0.06 -28.11 16 12 N -0.71 -21.25 4.96 -447.24 -2.22 -23.47 16 13 C 0.17 6.54 2.22 44.69 0.10 6.64 16 14 H 0.04 1.97 6.26 -2.39 -0.01 1.96 16 15 C -0.10 -3.33 5.34 29.51 0.16 -3.18 16 16 C -0.12 -5.15 5.02 28.36 0.14 -5.00 16 17 C 0.17 7.64 5.24 83.58 0.44 8.08 16 18 N -0.60 -29.95 2.60 -707.85 -1.84 -31.80 16 19 C -0.26 -14.85 9.63 84.03 0.81 -14.04 16 20 H 0.06 3.22 7.89 -2.91 -0.02 3.20 16 21 C -0.04 -2.48 4.91 84.86 0.42 -2.06 16 22 N -0.91 -53.73 9.43 21.65 0.20 -53.52 16 23 Si 0.95 46.98 29.60 68.60 2.03 49.01 16 24 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 25 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 26 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 27 C 0.16 6.47 5.18 87.59 0.45 6.93 16 28 C -0.14 -5.47 5.98 31.87 0.19 -5.27 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 3.21 5.60 -2.39 -0.01 3.20 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.23 1.40 7.46 -2.91 -0.02 1.38 16 40 H 0.41 7.92 7.40 -92.71 -0.69 7.23 16 41 H 0.09 2.20 7.85 -2.39 -0.02 2.18 16 42 H 0.08 2.39 6.28 -2.39 -0.01 2.38 16 43 H 0.06 2.99 5.29 -2.39 -0.01 2.98 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 2.88 6.05 -2.39 -0.01 2.87 16 46 H 0.03 1.35 8.13 -2.39 -0.02 1.33 16 47 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 48 H 0.02 1.04 7.99 -2.39 -0.02 1.02 16 49 H 0.06 2.12 6.88 -2.38 -0.02 2.10 16 50 H 0.08 2.52 8.12 -2.39 -0.02 2.50 16 51 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -81.31 394.90 3.49 -77.82 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.24 Total: 19.66 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 7.18 Total: 6.86 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -5.90 Total: -125.25 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.06 Total: -28.11 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -81.31 3.49 -77.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052930223.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.513 kcal (2) G-P(sol) polarization free energy of solvation -81.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds