Wall clock time and date at job start Tue Mar 31 2020 19:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47639 * 2 1 4 4 C 1.50700 * 109.47663 * 179.97438 * 3 2 1 5 5 C 1.38042 * 126.28802 * 269.99980 * 4 3 2 6 6 C 1.47429 * 126.41685 * 0.02562 * 5 4 3 7 7 O 1.21604 * 119.99754 * 359.70850 * 6 5 4 8 8 N 1.34775 * 120.00142 * 179.71574 * 6 5 4 9 9 C 1.46504 * 120.00114 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.49311 * 34.93235 * 9 8 6 11 11 C 1.53040 * 109.49883 * 154.99700 * 9 8 6 12 12 C 1.53031 * 109.53903 * 181.31441 * 11 9 8 13 13 C 1.53185 * 109.31745 * 298.63651 * 12 11 9 14 14 H 1.09005 * 109.58564 * 294.84722 * 13 12 11 15 15 C 1.52993 * 109.59194 * 174.56258 * 13 12 11 16 16 N 1.46933 * 108.77405 * 54.63060 * 13 12 11 17 17 C 1.36940 * 120.62932 * 126.37697 * 16 13 12 18 18 H 1.08004 * 119.99750 * 330.90227 * 17 16 13 19 19 C 1.38807 * 120.00313 * 150.90923 * 17 16 13 20 20 N 1.31618 * 120.00261 * 160.72765 * 19 17 16 21 21 Si 1.86804 * 119.99714 * 340.72628 * 19 17 16 22 22 H 1.48498 * 109.46932 * 92.33603 * 21 19 17 23 23 H 1.48497 * 109.46797 * 212.33544 * 21 19 17 24 24 H 1.48502 * 109.47149 * 332.33574 * 21 19 17 25 25 C 1.46923 * 118.73880 * 306.39572 * 16 13 12 26 26 C 1.41294 * 107.17078 * 179.75498 * 5 4 3 27 27 N 1.30451 * 108.02157 * 0.24320 * 26 5 4 28 28 N 1.34260 * 126.29471 * 90.17587 * 4 3 2 29 29 C 1.46500 * 125.75402 * 359.97438 * 28 4 3 30 30 H 1.08998 * 109.47557 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47347 * 300.00973 * 1 2 3 32 32 H 1.09006 * 109.46851 * 60.00243 * 1 2 3 33 33 H 1.09000 * 109.47347 * 239.99027 * 2 1 3 34 34 H 1.09006 * 109.46851 * 119.99757 * 2 1 3 35 35 H 1.09000 * 109.47545 * 59.99148 * 3 2 1 36 36 H 1.09006 * 109.46801 * 299.99787 * 3 2 1 37 37 H 0.97004 * 119.99874 * 359.97438 * 8 6 5 38 38 H 1.08999 * 109.46073 * 61.29278 * 11 9 8 39 39 H 1.09000 * 109.45964 * 301.33881 * 11 9 8 40 40 H 1.09003 * 109.50069 * 178.68023 * 12 11 9 41 41 H 1.09007 * 109.49659 * 58.58569 * 12 11 9 42 42 H 1.08999 * 109.47311 * 60.28326 * 15 13 12 43 43 H 1.09009 * 109.47278 * 180.28403 * 15 13 12 44 44 H 1.08999 * 109.47423 * 300.28096 * 15 13 12 45 45 H 0.96999 * 120.00064 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.58742 * 293.82020 * 25 16 13 47 47 H 1.08998 * 109.70152 * 173.46694 * 25 16 13 48 48 H 1.08000 * 125.99090 * 180.20096 * 26 5 4 49 49 H 1.09007 * 109.47041 * 270.27094 * 29 28 4 50 50 H 1.09001 * 109.46923 * 30.26628 * 29 28 4 51 51 H 1.08993 * 109.47376 * 150.26941 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3636 1.4426 1.1137 6 6 3.9247 1.4422 2.5211 7 8 2.7383 1.4471 2.7880 8 7 4.8383 1.4367 3.5119 9 6 4.4022 1.4369 4.9105 10 1 3.4870 0.8527 5.0062 11 6 5.4954 0.8209 5.7866 12 6 5.0275 0.7907 7.2433 13 6 4.7729 2.2229 7.7236 14 1 5.7118 2.7766 7.7358 15 6 4.1766 2.1933 9.1322 16 7 3.8310 2.8708 6.8005 17 6 2.6863 3.4578 7.2699 18 1 2.2170 3.0842 8.1680 19 6 2.1291 4.5330 6.5914 20 7 0.8694 4.8569 6.7927 21 14 3.1672 5.5202 5.3925 22 1 3.0118 4.9605 4.0259 23 1 2.7209 6.9365 5.4011 24 1 4.5941 5.4484 5.7976 25 6 4.1406 2.8765 5.3642 26 6 5.6988 1.4367 0.6515 27 7 5.6744 1.4386 -0.6528 28 7 4.3423 1.4456 -1.0811 29 6 3.8913 1.4491 -2.4750 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6768 1.9562 -0.8901 37 1 5.7847 1.4325 3.2990 38 1 6.4031 1.4193 5.7091 39 1 5.7008 -0.1953 5.4501 40 1 5.7969 0.3305 7.8632 41 1 4.1061 0.2130 7.3176 42 1 4.8754 1.7065 9.8124 43 1 3.9915 3.2131 9.4700 44 1 3.2379 1.6394 9.1179 45 1 0.4799 5.6079 6.3183 46 1 5.0279 3.4834 5.1840 47 1 3.2978 3.2874 4.8083 48 1 6.5844 1.4323 1.2697 49 1 3.7752 0.4222 -2.8219 50 1 2.9348 1.9669 -2.5461 51 1 4.6283 1.9606 -3.0940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071642894.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:24 Heat of formation + Delta-G solvation = 49.759620 kcal Electronic energy + Delta-G solvation = -30317.969546 eV Core-core repulsion = 26447.225308 eV Total energy + Delta-G solvation = -3870.744238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.58274 -39.24813 -37.65364 -35.42831 -34.35595 -33.45897 -32.74071 -31.01581 -30.62850 -30.43529 -27.53010 -26.64701 -25.94920 -24.76837 -22.91655 -22.39529 -21.83061 -20.98400 -20.15015 -19.68441 -19.12910 -17.52391 -16.47523 -16.12476 -15.83553 -15.60792 -15.08216 -14.89867 -14.65656 -14.55697 -14.19483 -13.79421 -13.70714 -13.52443 -13.39105 -13.17868 -12.99489 -12.92490 -12.72991 -12.33619 -12.28771 -12.06069 -11.65594 -11.58809 -11.38873 -11.36496 -11.21443 -11.03982 -10.72339 -10.67487 -10.65383 -10.30761 -10.20831 -9.93873 -9.58556 -9.56396 -9.48018 -9.28981 -8.79690 -8.61091 -8.37260 -6.84129 -5.84691 -3.22063 1.48249 2.14884 2.17850 3.44998 3.55082 3.55449 3.57937 3.73449 4.27339 4.34726 4.64038 4.72183 4.77617 4.84749 4.95413 5.01791 5.06444 5.12788 5.17513 5.25023 5.30239 5.39556 5.45148 5.53652 5.57855 5.63208 5.74139 5.81184 5.82399 6.00215 6.02986 6.09246 6.17477 6.19548 6.23037 6.29253 6.30881 6.33928 6.40124 6.53646 6.60645 6.69944 6.74032 6.76817 6.97995 7.05693 7.14919 7.42257 7.92473 8.07818 8.45360 8.68248 9.03964 9.83357 10.19701 11.30960 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.003747 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.605358 B = 7471.338960 C = 8104.908631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.068 4.068 4 C 0.160 3.840 5 C -0.290 4.290 6 C 0.588 3.412 7 O -0.534 6.534 8 N -0.723 5.723 9 C 0.129 3.871 10 H 0.092 0.908 11 C -0.117 4.117 12 C -0.127 4.127 13 C 0.169 3.831 14 H 0.029 0.971 15 C -0.137 4.137 16 N -0.598 5.598 17 C -0.259 4.259 18 H 0.092 0.908 19 C 0.029 3.971 20 N -0.907 5.907 21 Si 0.878 3.122 22 H -0.287 1.287 23 H -0.305 1.305 24 H -0.272 1.272 25 C 0.122 3.878 26 C 0.082 3.918 27 N -0.302 5.302 28 N -0.365 5.365 29 C 0.097 3.903 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.391 0.609 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.261 0.739 46 H 0.022 0.978 47 H 0.079 0.921 48 H 0.188 0.812 49 H 0.078 0.922 50 H 0.090 0.910 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.231 -10.533 -15.373 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.107 4.107 4 C 0.028 3.972 5 C -0.305 4.305 6 C 0.375 3.625 7 O -0.411 6.411 8 N -0.373 5.373 9 C 0.024 3.976 10 H 0.110 0.890 11 C -0.155 4.155 12 C -0.167 4.167 13 C 0.063 3.937 14 H 0.047 0.953 15 C -0.194 4.194 16 N -0.323 5.323 17 C -0.388 4.388 18 H 0.109 0.891 19 C -0.170 4.170 20 N -0.550 5.550 21 Si 0.709 3.291 22 H -0.214 1.214 23 H -0.234 1.234 24 H -0.198 1.198 25 C -0.005 4.005 26 C -0.106 4.106 27 N -0.122 5.122 28 N -0.144 5.144 29 C -0.044 4.044 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.225 0.775 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.040 0.960 47 H 0.097 0.903 48 H 0.205 0.795 49 H 0.096 0.904 50 H 0.108 0.892 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.895 -10.400 -16.401 20.964 hybrid contribution 0.720 0.740 -0.322 1.081 sum 8.615 -9.660 -16.723 21.147 Atomic orbital electron populations 1.21744 0.94901 1.01846 1.02289 1.21357 0.96404 0.94781 1.02158 1.20605 0.85646 0.99328 1.05115 1.21542 0.94668 0.94820 0.86190 1.20126 0.92728 1.23700 0.93927 1.17188 0.85787 0.76053 0.83464 1.90794 1.16236 1.50074 1.83979 1.45878 1.08997 1.76012 1.06452 1.21712 0.98134 0.99812 0.77947 0.89026 1.21685 0.97846 0.99842 0.96125 1.22044 1.00829 0.99463 0.94358 1.20496 0.92230 0.90696 0.90285 0.95347 1.21808 1.00148 1.02413 0.95072 1.44376 1.22907 1.65405 0.99570 1.18900 0.98666 1.09225 1.11966 0.89058 1.25271 0.95937 0.97478 0.98281 1.69814 1.11145 1.29710 1.44354 0.87002 0.81475 0.79246 0.81388 1.21443 1.23374 1.19758 1.21679 0.99369 0.93295 0.86165 1.23992 0.97255 0.97359 0.91978 1.77134 0.96121 1.25644 1.13267 1.48299 1.04044 1.55833 1.06270 1.21932 1.01314 1.03676 0.77477 0.92566 0.91691 0.92962 0.92839 0.90902 0.86597 0.90906 0.77545 0.92201 0.92445 0.92282 0.91608 0.94134 0.91766 0.92353 0.92898 0.96036 0.90285 0.79480 0.90392 0.89194 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.11 -1.20 5.92 -26.74 -0.16 -1.35 16 3 C -0.07 -0.83 4.90 -27.89 -0.14 -0.96 16 4 C 0.16 2.15 6.26 -81.60 -0.51 1.64 16 5 C -0.29 -4.31 6.13 -105.07 -0.64 -4.96 16 6 C 0.59 10.37 7.78 -12.52 -0.10 10.28 16 7 O -0.53 -11.41 14.50 5.27 0.08 -11.33 16 8 N -0.72 -11.44 5.07 -54.76 -0.28 -11.72 16 9 C 0.13 2.39 2.61 -67.81 -0.18 2.22 16 10 H 0.09 1.94 7.57 -51.93 -0.39 1.55 16 11 C -0.12 -1.74 5.35 -26.69 -0.14 -1.89 16 12 C -0.13 -2.03 5.37 -26.62 -0.14 -2.18 16 13 C 0.17 3.29 3.49 -67.60 -0.24 3.05 16 14 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 15 C -0.14 -2.52 7.95 37.15 0.30 -2.22 16 16 N -0.60 -14.36 2.75 -164.78 -0.45 -14.81 16 17 C -0.26 -7.31 9.05 -15.06 -0.14 -7.44 16 18 H 0.09 2.69 6.40 -52.48 -0.34 2.35 16 19 C 0.03 0.88 5.24 -17.43 -0.09 0.79 16 20 N -0.91 -28.60 13.97 55.49 0.78 -27.82 16 21 Si 0.88 23.59 24.34 -169.99 -4.14 19.45 16 22 H -0.29 -7.78 6.63 56.52 0.37 -7.41 16 23 H -0.31 -8.29 7.11 56.52 0.40 -7.89 16 24 H -0.27 -7.11 6.63 56.52 0.37 -6.74 16 25 C 0.12 2.77 3.77 -3.71 -0.01 2.76 16 26 C 0.08 1.02 11.50 -16.98 -0.20 0.83 16 27 N -0.30 -3.96 12.50 30.86 0.39 -3.57 16 28 N -0.36 -4.29 3.98 -63.34 -0.25 -4.54 16 29 C 0.10 0.68 11.24 59.85 0.67 1.35 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.12 1.78 6.49 -51.93 -0.34 1.45 16 36 H 0.07 0.68 7.05 -51.93 -0.37 0.32 16 37 H 0.39 4.75 7.56 -40.82 -0.31 4.44 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 1.29 7.65 -51.92 -0.40 0.89 16 44 H 0.06 1.13 7.43 -51.93 -0.39 0.75 16 45 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 46 H 0.02 0.49 7.03 -51.93 -0.37 0.13 16 47 H 0.08 2.10 4.62 -51.93 -0.24 1.86 16 48 H 0.19 1.68 7.50 -52.49 -0.39 1.28 16 49 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 50 H 0.09 0.47 7.02 -51.93 -0.36 0.10 16 51 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -35.90 394.45 -7.86 -43.76 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -8.57 Total: 3.88 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.35 Total: 0.76 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: 0.18 Total: -62.47 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -4.14 Total: 19.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.90 -7.86 -43.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071642894.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.522 kcal (2) G-P(sol) polarization free energy of solvation -35.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds