Wall clock time and date at job start Tue Mar 31 2020 19:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47639 * 2 1 4 4 C 1.50700 * 109.47663 * 179.97438 * 3 2 1 5 5 C 1.38042 * 126.28802 * 269.99980 * 4 3 2 6 6 C 1.47429 * 126.41685 * 0.02562 * 5 4 3 7 7 O 1.21604 * 119.99754 * 359.70850 * 6 5 4 8 8 N 1.34775 * 120.00142 * 179.71574 * 6 5 4 9 9 C 1.46504 * 120.00114 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.49311 * 34.93235 * 9 8 6 11 11 C 1.53040 * 109.49883 * 154.99700 * 9 8 6 12 12 C 1.53031 * 109.53903 * 181.31441 * 11 9 8 13 13 C 1.53185 * 109.31745 * 298.63651 * 12 11 9 14 14 H 1.09005 * 109.58564 * 294.84722 * 13 12 11 15 15 C 1.52993 * 109.59194 * 174.56258 * 13 12 11 16 16 N 1.46933 * 108.77405 * 54.63060 * 13 12 11 17 17 C 1.36940 * 120.62932 * 126.37697 * 16 13 12 18 18 H 1.08004 * 119.99750 * 330.90227 * 17 16 13 19 19 C 1.38807 * 120.00313 * 150.90923 * 17 16 13 20 20 N 1.31618 * 120.00261 * 160.72765 * 19 17 16 21 21 Si 1.86804 * 119.99714 * 340.72628 * 19 17 16 22 22 H 1.48498 * 109.46932 * 92.33603 * 21 19 17 23 23 H 1.48497 * 109.46797 * 212.33544 * 21 19 17 24 24 H 1.48502 * 109.47149 * 332.33574 * 21 19 17 25 25 C 1.46923 * 118.73880 * 306.39572 * 16 13 12 26 26 C 1.41294 * 107.17078 * 179.75498 * 5 4 3 27 27 N 1.30451 * 108.02157 * 0.24320 * 26 5 4 28 28 N 1.34260 * 126.29471 * 90.17587 * 4 3 2 29 29 C 1.46500 * 125.75402 * 359.97438 * 28 4 3 30 30 H 1.08998 * 109.47557 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47347 * 300.00973 * 1 2 3 32 32 H 1.09006 * 109.46851 * 60.00243 * 1 2 3 33 33 H 1.09000 * 109.47347 * 239.99027 * 2 1 3 34 34 H 1.09006 * 109.46851 * 119.99757 * 2 1 3 35 35 H 1.09000 * 109.47545 * 59.99148 * 3 2 1 36 36 H 1.09006 * 109.46801 * 299.99787 * 3 2 1 37 37 H 0.97004 * 119.99874 * 359.97438 * 8 6 5 38 38 H 1.08999 * 109.46073 * 61.29278 * 11 9 8 39 39 H 1.09000 * 109.45964 * 301.33881 * 11 9 8 40 40 H 1.09003 * 109.50069 * 178.68023 * 12 11 9 41 41 H 1.09007 * 109.49659 * 58.58569 * 12 11 9 42 42 H 1.08999 * 109.47311 * 60.28326 * 15 13 12 43 43 H 1.09009 * 109.47278 * 180.28403 * 15 13 12 44 44 H 1.08999 * 109.47423 * 300.28096 * 15 13 12 45 45 H 0.96999 * 120.00064 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.58742 * 293.82020 * 25 16 13 47 47 H 1.08998 * 109.70152 * 173.46694 * 25 16 13 48 48 H 1.08000 * 125.99090 * 180.20096 * 26 5 4 49 49 H 1.09007 * 109.47041 * 270.27094 * 29 28 4 50 50 H 1.09001 * 109.46923 * 30.26628 * 29 28 4 51 51 H 1.08993 * 109.47376 * 150.26941 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3636 1.4426 1.1137 6 6 3.9247 1.4422 2.5211 7 8 2.7383 1.4471 2.7880 8 7 4.8383 1.4367 3.5119 9 6 4.4022 1.4369 4.9105 10 1 3.4870 0.8527 5.0062 11 6 5.4954 0.8209 5.7866 12 6 5.0275 0.7907 7.2433 13 6 4.7729 2.2229 7.7236 14 1 5.7118 2.7766 7.7358 15 6 4.1766 2.1933 9.1322 16 7 3.8310 2.8708 6.8005 17 6 2.6863 3.4578 7.2699 18 1 2.2170 3.0842 8.1680 19 6 2.1291 4.5330 6.5914 20 7 0.8694 4.8569 6.7927 21 14 3.1672 5.5202 5.3925 22 1 3.0118 4.9605 4.0259 23 1 2.7209 6.9365 5.4011 24 1 4.5941 5.4484 5.7976 25 6 4.1406 2.8765 5.3642 26 6 5.6988 1.4367 0.6515 27 7 5.6744 1.4386 -0.6528 28 7 4.3423 1.4456 -1.0811 29 6 3.8913 1.4491 -2.4750 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6768 1.9562 -0.8901 37 1 5.7847 1.4325 3.2990 38 1 6.4031 1.4193 5.7091 39 1 5.7008 -0.1953 5.4501 40 1 5.7969 0.3305 7.8632 41 1 4.1061 0.2130 7.3176 42 1 4.8754 1.7065 9.8124 43 1 3.9915 3.2131 9.4700 44 1 3.2379 1.6394 9.1179 45 1 0.4799 5.6079 6.3183 46 1 5.0279 3.4834 5.1840 47 1 3.2978 3.2874 4.8083 48 1 6.5844 1.4323 1.2697 49 1 3.7752 0.4222 -2.8219 50 1 2.9348 1.9669 -2.5461 51 1 4.6283 1.9606 -3.0940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071642894.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:21 Heat of formation + Delta-G solvation = 23.984829 kcal Electronic energy + Delta-G solvation = -30319.087225 eV Core-core repulsion = 26447.225308 eV Total energy + Delta-G solvation = -3871.861917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.57109 -40.68464 -39.20926 -36.44315 -35.83854 -34.64634 -34.29006 -32.57278 -32.34178 -31.51318 -28.56248 -27.57594 -27.48568 -26.46035 -24.54452 -23.63914 -22.74248 -22.29955 -21.45423 -21.06802 -20.45314 -18.67950 -18.43885 -17.60122 -16.88987 -16.71457 -16.61223 -16.39212 -15.89512 -15.63441 -15.59199 -15.27427 -15.11488 -14.87336 -14.63745 -14.46445 -14.31970 -14.10008 -13.75791 -13.59463 -13.52361 -13.41658 -13.14401 -12.98329 -12.69101 -12.53121 -12.49087 -12.46588 -12.24821 -12.05819 -11.98899 -11.73208 -11.68046 -11.61088 -11.37066 -11.28267 -10.81235 -10.74002 -10.43115 -10.13954 -9.63804 -8.83818 -8.15385 -5.46155 0.43769 1.11842 1.27333 1.30195 1.35123 1.39796 2.25779 2.41359 2.46492 3.09523 3.35193 3.41282 3.49806 3.82037 3.84784 4.01311 4.04870 4.07520 4.14749 4.16503 4.29057 4.30519 4.37905 4.41204 4.49031 4.56459 4.61080 4.62754 4.70132 4.74826 4.85304 4.86275 4.90575 4.90885 5.02440 5.03396 5.11376 5.16731 5.19959 5.27418 5.30201 5.35355 5.38435 5.52502 5.54901 5.67579 5.82901 5.93101 6.19818 6.45188 6.70308 6.95191 7.39216 7.67170 8.06469 9.04378 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.003747 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.605358 B = 7471.338960 C = 8104.908631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C -0.066 4.066 4 C 0.157 3.843 5 C -0.321 4.321 6 C 0.583 3.417 7 O -0.584 6.584 8 N -0.709 5.709 9 C 0.141 3.859 10 H 0.055 0.945 11 C -0.107 4.107 12 C -0.120 4.120 13 C 0.157 3.843 14 H 0.045 0.955 15 C -0.132 4.132 16 N -0.614 5.614 17 C -0.234 4.234 18 H 0.068 0.932 19 C -0.033 4.033 20 N -0.957 5.957 21 Si 0.938 3.062 22 H -0.299 1.299 23 H -0.311 1.311 24 H -0.255 1.255 25 C 0.122 3.878 26 C 0.090 3.910 27 N -0.316 5.316 28 N -0.358 5.358 29 C 0.083 3.917 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.413 0.587 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.037 0.963 45 H 0.257 0.743 46 H 0.031 0.969 47 H 0.033 0.967 48 H 0.221 0.779 49 H 0.098 0.902 50 H 0.109 0.891 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.889 -12.203 -17.302 24.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.139 4.139 3 C -0.104 4.104 4 C 0.023 3.977 5 C -0.336 4.336 6 C 0.372 3.628 7 O -0.464 6.464 8 N -0.361 5.361 9 C 0.035 3.965 10 H 0.073 0.927 11 C -0.145 4.145 12 C -0.159 4.159 13 C 0.053 3.947 14 H 0.063 0.937 15 C -0.189 4.189 16 N -0.339 5.339 17 C -0.364 4.364 18 H 0.086 0.914 19 C -0.228 4.228 20 N -0.604 5.604 21 Si 0.769 3.231 22 H -0.228 1.228 23 H -0.240 1.240 24 H -0.179 1.179 25 C -0.005 4.005 26 C -0.098 4.098 27 N -0.135 5.135 28 N -0.136 5.136 29 C -0.056 4.056 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.250 0.750 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.237 0.763 49 H 0.116 0.884 50 H 0.128 0.872 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.662 -12.100 -18.359 24.889 hybrid contribution -0.430 1.166 0.261 1.270 sum 11.232 -10.934 -18.098 23.942 Atomic orbital electron populations 1.21732 0.94215 1.02510 1.02090 1.21289 0.96942 0.93907 1.01811 1.20561 0.85276 0.99963 1.04649 1.21694 0.95154 0.94175 0.86704 1.20054 0.94463 1.26439 0.92636 1.17690 0.85267 0.74974 0.84905 1.90778 1.18445 1.52343 1.84870 1.45655 1.10015 1.75343 1.05104 1.21317 0.98733 0.96425 0.80063 0.92669 1.21673 0.96792 1.01753 0.94292 1.21967 1.01594 0.96594 0.95771 1.20883 0.91517 0.92654 0.89680 0.93686 1.21757 1.00405 1.01006 0.95747 1.44582 1.22816 1.65526 1.01012 1.18924 0.99351 1.07929 1.10206 0.91398 1.25846 0.96808 0.99245 1.00854 1.69937 1.12786 1.30842 1.46838 0.86022 0.80846 0.77269 0.78940 1.22789 1.24020 1.17916 1.21603 0.97619 0.96131 0.85124 1.24436 0.97201 0.96085 0.92032 1.77105 0.96929 1.26068 1.13437 1.48649 1.03354 1.54253 1.07391 1.22394 1.02591 1.05534 0.75086 0.91480 0.94362 0.90653 0.90234 0.93996 0.90599 0.87734 0.74968 0.89686 0.89218 0.87931 0.93296 0.89699 0.94327 0.94393 0.93380 0.95120 0.94875 0.76315 0.88372 0.87246 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.91 71.98 0.71 -2.21 16 2 C -0.10 -2.20 5.92 30.59 0.18 -2.02 16 3 C -0.07 -1.59 4.90 29.85 0.15 -1.45 16 4 C 0.16 4.09 6.26 42.14 0.26 4.35 16 5 C -0.32 -9.38 6.13 -20.15 -0.12 -9.50 16 6 C 0.58 20.97 7.78 86.66 0.67 21.64 16 7 O -0.58 -26.65 14.50 -4.04 -0.06 -26.71 16 8 N -0.71 -21.72 5.07 -445.43 -2.26 -23.98 16 9 C 0.14 5.12 2.61 45.07 0.12 5.24 16 10 H 0.06 2.42 7.57 -2.39 -0.02 2.40 16 11 C -0.11 -2.78 5.35 30.62 0.16 -2.62 16 12 C -0.12 -3.42 5.37 30.67 0.16 -3.25 16 13 C 0.16 5.77 3.49 44.97 0.16 5.93 16 14 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 15 C -0.13 -4.70 7.95 71.98 0.57 -4.13 16 16 N -0.61 -29.61 2.75 -675.25 -1.86 -31.47 16 17 C -0.23 -13.71 9.05 84.03 0.76 -12.95 16 18 H 0.07 4.22 6.40 -2.91 -0.02 4.20 16 19 C -0.03 -2.07 5.24 84.86 0.44 -1.62 16 20 N -0.96 -63.73 13.97 21.65 0.30 -63.43 16 21 Si 0.94 51.07 24.34 68.60 1.67 52.74 16 22 H -0.30 -16.73 6.63 99.48 0.66 -16.08 16 23 H -0.31 -16.99 7.11 99.48 0.71 -16.28 16 24 H -0.26 -12.91 6.63 99.48 0.66 -12.25 16 25 C 0.12 5.56 3.77 86.36 0.33 5.89 16 26 C 0.09 2.05 11.50 85.65 0.99 3.03 16 27 N -0.32 -7.49 12.50 -56.27 -0.70 -8.20 16 28 N -0.36 -7.60 3.98 -354.31 -1.41 -9.01 16 29 C 0.08 0.89 11.24 127.77 1.44 2.32 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.08 2.52 6.49 -2.39 -0.02 2.50 16 36 H 0.10 1.79 7.05 -2.38 -0.02 1.77 16 37 H 0.41 8.83 7.56 -92.71 -0.70 8.13 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 40 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.04 1.54 7.65 -2.38 -0.02 1.52 16 44 H 0.04 1.48 7.43 -2.39 -0.02 1.46 16 45 H 0.26 16.46 8.31 -92.71 -0.77 15.69 16 46 H 0.03 1.35 7.03 -2.39 -0.02 1.33 16 47 H 0.03 1.83 4.62 -2.39 -0.01 1.81 16 48 H 0.22 3.15 7.50 -2.91 -0.02 3.13 16 49 H 0.10 0.70 8.14 -2.38 -0.02 0.69 16 50 H 0.11 0.75 7.02 -2.39 -0.02 0.73 16 51 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -85.81 394.45 2.80 -83.02 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.13 Total: 18.38 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.98 Total: 8.66 kcal Atomic # 7 Polarization: -130.15 SS G_CDS: -5.93 Total: -136.08 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.06 Total: -26.71 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 1.67 Total: 52.74 kcal Total: -85.81 2.80 -83.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071642894.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.000 kcal (2) G-P(sol) polarization free energy of solvation -85.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds