Wall clock time and date at job start Tue Mar 31 2020 18:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46781 * 2 1 4 4 N 1.30501 * 125.65175 * 269.95206 * 3 2 1 5 5 C 1.34124 * 109.25839 * 180.02562 * 4 3 2 6 6 C 1.34672 * 108.01882 * 359.73049 * 5 4 3 7 7 N 1.35046 * 125.65222 * 90.00324 * 3 2 1 8 8 C 1.46507 * 126.39288 * 359.95779 * 7 3 2 9 9 H 1.09000 * 109.47371 * 0.02562 * 8 7 3 10 10 C 1.53002 * 109.46725 * 120.00508 * 8 7 3 11 11 C 1.53004 * 109.46950 * 240.00011 * 8 7 3 12 12 C 1.50701 * 109.46829 * 175.00203 * 11 8 7 13 13 O 1.21278 * 120.00178 * 0.02562 * 12 11 8 14 14 N 1.34779 * 119.99894 * 179.97438 * 12 11 8 15 15 C 1.47429 * 125.64513 * 0.04879 * 14 12 11 16 16 C 1.54918 * 104.82748 * 204.08892 * 15 14 12 17 17 C 1.55158 * 101.58112 * 322.99062 * 16 15 14 18 18 H 1.09000 * 110.71742 * 277.14310 * 17 16 15 19 19 N 1.46497 * 110.71879 * 153.86657 * 17 16 15 20 20 C 1.36939 * 119.99691 * 91.47608 * 19 17 16 21 21 H 1.07999 * 120.00359 * 0.02562 * 20 19 17 22 22 C 1.38822 * 119.99656 * 179.97438 * 20 19 17 23 23 N 1.31613 * 119.99766 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99728 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47249 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47080 * 120.00066 * 24 22 20 27 27 H 1.48496 * 109.47050 * 239.99968 * 24 22 20 28 28 C 1.47018 * 125.64870 * 179.97438 * 14 12 11 29 29 H 1.08995 * 109.88478 * 298.55531 * 28 14 12 30 30 C 1.53006 * 109.87796 * 59.56557 * 28 14 12 31 31 H 1.09005 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47439 * 300.00107 * 1 2 3 33 33 H 1.08996 * 109.47441 * 60.00152 * 1 2 3 34 34 H 1.08994 * 109.47260 * 239.99536 * 2 1 3 35 35 H 1.09002 * 109.47024 * 119.99767 * 2 1 3 36 36 H 1.08003 * 125.98869 * 180.02562 * 5 4 3 37 37 H 1.08001 * 126.59151 * 180.27797 * 6 5 4 38 38 H 1.09001 * 109.47041 * 299.99491 * 10 8 7 39 39 H 1.09000 * 109.47376 * 59.99783 * 10 8 7 40 40 H 1.09001 * 109.47095 * 179.97438 * 10 8 7 41 41 H 1.08999 * 109.46789 * 55.00572 * 11 8 7 42 42 H 1.08997 * 109.47262 * 295.00355 * 11 8 7 43 43 H 1.09001 * 110.36528 * 322.92522 * 15 14 12 44 44 H 1.08994 * 110.36552 * 85.25347 * 15 14 12 45 45 H 1.08993 * 111.00105 * 81.06361 * 16 15 14 46 46 H 1.08996 * 111.00077 * 204.91720 * 16 15 14 47 47 H 0.97002 * 119.99955 * 271.47252 * 19 17 16 48 48 H 0.97001 * 119.99798 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.47357 * 58.54687 * 30 28 14 50 50 H 1.08998 * 109.46865 * 178.54449 * 30 28 14 51 51 H 1.08994 * 109.46919 * 298.54273 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2866 2.1377 -1.0604 5 6 2.7156 3.3508 -0.6819 6 6 2.7220 3.3890 0.6643 7 7 2.2946 2.1630 1.0973 8 6 2.1434 1.7374 2.4911 9 1 1.7800 0.7101 2.5200 10 6 3.4973 1.8192 3.1990 11 6 1.1421 2.6532 3.1981 12 6 0.8935 2.1427 4.5941 13 8 1.4615 1.1451 4.9851 14 7 0.0406 2.7955 5.4083 15 6 -0.7133 4.0146 5.0634 16 6 -1.0183 4.6903 6.4237 17 6 -1.2846 3.4594 7.3301 18 1 -2.3122 3.1133 7.2184 19 7 -0.9914 3.7739 8.7306 20 6 -1.9825 4.2487 9.5476 21 1 -2.9804 4.3908 9.1597 22 6 -1.7048 4.5462 10.8748 23 7 -0.4891 4.3715 11.3479 24 14 -3.0569 5.1931 11.9896 25 1 -4.3235 5.2986 11.2216 26 1 -3.2454 4.2618 13.1308 27 1 -2.6765 6.5338 12.5024 28 6 -0.2931 2.4089 6.7869 29 1 -0.7547 1.4215 6.7937 30 6 0.9736 2.3968 7.6450 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.0010 4.1572 -1.3411 37 1 3.0114 4.2255 1.2832 38 1 4.2106 1.1668 2.6953 39 1 3.8610 2.8463 3.1701 40 1 3.3847 1.5030 4.2360 41 1 0.2043 2.6636 2.6426 42 1 1.5464 3.6642 3.2475 43 1 -0.1068 4.6722 4.4407 44 1 -1.6404 3.7554 4.5523 45 1 -0.1588 5.2585 6.7791 46 1 -1.9026 5.3239 6.3556 47 1 -0.0953 3.6458 9.0791 48 1 -0.2949 4.5798 12.2752 49 1 1.4339 3.3847 7.6274 50 1 0.7150 2.1347 8.6709 51 1 1.6743 1.6624 7.2480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074658977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:31 Heat of formation + Delta-G solvation = 37.399123 kcal Electronic energy + Delta-G solvation = -29607.517363 eV Core-core repulsion = 25736.237133 eV Total energy + Delta-G solvation = -3871.280230 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.40151 -40.27310 -37.97693 -35.74169 -34.31001 -34.06328 -31.96250 -31.04011 -30.71995 -29.35016 -28.81819 -27.76236 -25.31895 -24.26860 -23.77766 -23.19864 -22.53334 -21.21547 -19.86043 -19.32280 -18.72606 -17.79190 -17.49411 -16.54096 -15.96877 -15.84622 -15.39533 -15.10298 -14.89719 -14.57685 -14.26495 -14.12816 -13.80094 -13.66644 -13.64574 -13.37169 -13.15659 -12.99259 -12.56510 -12.52464 -12.24434 -12.16459 -11.92040 -11.82773 -11.77826 -11.64685 -11.53213 -11.33593 -11.28261 -11.03955 -10.89127 -10.55959 -10.29431 -10.17882 -10.06612 -9.85801 -9.80342 -9.59715 -9.03591 -8.55180 -8.54019 -7.11169 -5.89344 -3.19511 1.84906 2.40887 2.56097 2.97849 3.07954 3.35749 3.41779 3.43950 4.14608 4.15974 4.34714 4.43522 4.48526 4.58707 4.75605 4.86997 4.90145 4.97131 5.06165 5.12313 5.16777 5.17042 5.27685 5.32723 5.37002 5.44116 5.48140 5.52498 5.53227 5.55576 5.60676 5.71132 5.72642 5.87548 5.90766 5.97158 6.01629 6.12591 6.18031 6.21228 6.44966 6.46068 6.58995 6.59676 6.72847 6.87663 7.00120 7.59213 7.59869 7.94272 8.12629 8.28944 9.40874 9.94879 10.29695 11.33024 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.025587 B = 0.002258 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.043545 B =12398.070279 C =12455.478755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C 0.209 3.791 4 N -0.493 5.493 5 C -0.031 4.031 6 C -0.055 4.055 7 N -0.447 5.447 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.166 4.166 11 C -0.146 4.146 12 C 0.532 3.468 13 O -0.541 6.541 14 N -0.605 5.605 15 C 0.096 3.904 16 C -0.154 4.154 17 C 0.174 3.826 18 H 0.066 0.934 19 N -0.716 5.716 20 C -0.246 4.246 21 H 0.072 0.928 22 C -0.010 4.010 23 N -0.930 5.930 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.127 3.873 29 H 0.072 0.928 30 C -0.158 4.158 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.167 0.833 37 H 0.171 0.829 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.391 0.609 48 H 0.256 0.744 49 H 0.055 0.945 50 H 0.080 0.920 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 -4.106 -21.370 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.054 4.054 4 N -0.212 5.212 5 C -0.179 4.179 6 C -0.188 4.188 7 N -0.130 5.130 8 C 0.044 3.956 9 H 0.129 0.871 10 C -0.223 4.223 11 C -0.187 4.187 12 C 0.320 3.680 13 O -0.419 6.419 14 N -0.338 5.338 15 C -0.028 4.028 16 C -0.196 4.196 17 C 0.062 3.938 18 H 0.084 0.916 19 N -0.359 5.359 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.206 4.206 23 N -0.578 5.578 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.023 3.977 29 H 0.090 0.910 30 C -0.216 4.216 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.185 0.815 37 H 0.188 0.812 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.229 0.771 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.099 0.901 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.628 -4.922 -21.738 22.763 hybrid contribution -0.320 1.077 1.575 1.935 sum 4.307 -3.845 -20.163 20.973 Atomic orbital electron populations 1.21741 0.93864 1.02395 1.02482 1.19985 0.96515 0.87497 1.04002 1.23269 1.04044 0.96675 0.81373 1.70230 1.18348 1.04334 1.28282 1.22251 1.06698 0.96233 0.92755 1.22620 1.09491 0.89977 0.96727 1.45628 1.48614 1.11656 1.07115 1.21181 0.97304 0.99759 0.77377 0.87102 1.22284 0.94307 1.02565 1.03156 1.21960 1.01184 1.01234 0.94336 1.19743 0.78740 0.83537 0.85999 1.90672 1.49194 1.25754 1.76285 1.48601 1.42896 1.27767 1.14560 1.22422 0.95454 0.85852 0.99024 1.23573 1.02441 1.00123 0.93443 1.21172 0.95701 0.90741 0.86204 0.91605 1.42655 1.11758 1.77293 1.04161 1.19289 0.91220 1.35898 0.91309 0.90979 1.24767 0.96664 1.02020 0.97187 1.69664 1.18747 1.54249 1.15111 0.86104 0.80939 0.78220 0.80801 1.20492 1.21773 1.21812 1.21925 0.96931 0.99016 0.79809 0.90983 1.21996 0.96907 1.01945 1.00744 0.91520 0.92849 0.91858 0.88761 0.90338 0.81526 0.81215 0.91991 0.92248 0.88179 0.88409 0.88235 0.91413 0.91510 0.90670 0.90473 0.77120 0.93364 0.92643 0.90107 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 37.16 0.37 -0.73 16 2 C -0.04 -0.34 6.08 -27.88 -0.17 -0.51 16 3 C 0.21 2.26 7.16 -155.41 -1.11 1.15 16 4 N -0.49 -6.18 11.25 -10.81 -0.12 -6.30 16 5 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 6 C -0.06 -0.52 10.70 -16.56 -0.18 -0.70 16 7 N -0.45 -4.40 2.61 -106.82 -0.28 -4.68 16 8 C 0.15 1.38 2.64 -67.92 -0.18 1.20 16 9 H 0.11 1.08 6.48 -51.93 -0.34 0.74 16 10 C -0.17 -1.59 9.00 37.16 0.33 -1.25 16 11 C -0.15 -1.37 4.18 -27.88 -0.12 -1.48 16 12 C 0.53 6.82 7.35 -10.98 -0.08 6.74 16 13 O -0.54 -8.33 12.86 5.56 0.07 -8.26 16 14 N -0.60 -8.17 3.08 -163.01 -0.50 -8.67 16 15 C 0.10 1.11 6.69 -2.52 -0.02 1.09 16 16 C -0.15 -2.32 6.77 -24.58 -0.17 -2.48 16 17 C 0.17 3.13 3.48 -66.10 -0.23 2.90 16 18 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 19 N -0.72 -16.55 4.94 -51.65 -0.26 -16.80 16 20 C -0.25 -6.40 9.96 -15.05 -0.15 -6.55 16 21 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -26.89 13.06 55.49 0.72 -26.16 16 24 Si 0.91 21.45 29.55 -169.99 -5.02 16.42 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 C 0.13 2.07 3.48 -66.95 -0.23 1.84 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 C -0.16 -2.77 7.93 37.16 0.29 -2.47 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.57 7.08 -51.93 -0.37 0.20 16 36 H 0.17 1.38 8.06 -52.48 -0.42 0.95 16 37 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.52 7.96 -51.93 -0.41 0.11 16 40 H 0.10 1.15 5.95 -51.93 -0.31 0.84 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 0.82 7.79 -51.93 -0.40 0.42 16 43 H 0.07 0.64 7.48 -51.93 -0.39 0.26 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.39 9.60 5.06 -40.82 -0.21 9.40 16 48 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 49 H 0.05 0.99 8.01 -51.93 -0.42 0.58 16 50 H 0.08 1.58 6.82 -51.93 -0.35 1.22 16 51 H 0.06 1.04 6.74 -51.93 -0.35 0.69 16 LS Contribution 402.47 15.07 6.07 6.07 Total: -1.00 -31.07 402.47 -9.85 -40.92 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -8.59 Total: 9.64 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.94 Total: -2.17 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -0.43 Total: -62.62 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.07 Total: -8.26 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.07 -9.85 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074658977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.320 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds