Wall clock time and date at job start Tue Mar 31 2020 18:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46781 * 2 1 4 4 N 1.30501 * 125.65175 * 269.95206 * 3 2 1 5 5 C 1.34124 * 109.25839 * 180.02562 * 4 3 2 6 6 C 1.34672 * 108.01882 * 359.73049 * 5 4 3 7 7 N 1.35046 * 125.65222 * 90.00324 * 3 2 1 8 8 C 1.46507 * 126.39288 * 359.95779 * 7 3 2 9 9 H 1.09000 * 109.47371 * 0.02562 * 8 7 3 10 10 C 1.53002 * 109.46725 * 120.00508 * 8 7 3 11 11 C 1.53004 * 109.46950 * 240.00011 * 8 7 3 12 12 C 1.50701 * 109.46829 * 175.00203 * 11 8 7 13 13 O 1.21278 * 120.00178 * 0.02562 * 12 11 8 14 14 N 1.34779 * 119.99894 * 179.97438 * 12 11 8 15 15 C 1.47429 * 125.64513 * 0.04879 * 14 12 11 16 16 C 1.54918 * 104.82748 * 204.08892 * 15 14 12 17 17 C 1.55158 * 101.58112 * 322.99062 * 16 15 14 18 18 H 1.09000 * 110.71742 * 277.14310 * 17 16 15 19 19 N 1.46497 * 110.71879 * 153.86657 * 17 16 15 20 20 C 1.36939 * 119.99691 * 91.47608 * 19 17 16 21 21 H 1.07999 * 120.00359 * 0.02562 * 20 19 17 22 22 C 1.38822 * 119.99656 * 179.97438 * 20 19 17 23 23 N 1.31613 * 119.99766 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99728 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47249 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47080 * 120.00066 * 24 22 20 27 27 H 1.48496 * 109.47050 * 239.99968 * 24 22 20 28 28 C 1.47018 * 125.64870 * 179.97438 * 14 12 11 29 29 H 1.08995 * 109.88478 * 298.55531 * 28 14 12 30 30 C 1.53006 * 109.87796 * 59.56557 * 28 14 12 31 31 H 1.09005 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47439 * 300.00107 * 1 2 3 33 33 H 1.08996 * 109.47441 * 60.00152 * 1 2 3 34 34 H 1.08994 * 109.47260 * 239.99536 * 2 1 3 35 35 H 1.09002 * 109.47024 * 119.99767 * 2 1 3 36 36 H 1.08003 * 125.98869 * 180.02562 * 5 4 3 37 37 H 1.08001 * 126.59151 * 180.27797 * 6 5 4 38 38 H 1.09001 * 109.47041 * 299.99491 * 10 8 7 39 39 H 1.09000 * 109.47376 * 59.99783 * 10 8 7 40 40 H 1.09001 * 109.47095 * 179.97438 * 10 8 7 41 41 H 1.08999 * 109.46789 * 55.00572 * 11 8 7 42 42 H 1.08997 * 109.47262 * 295.00355 * 11 8 7 43 43 H 1.09001 * 110.36528 * 322.92522 * 15 14 12 44 44 H 1.08994 * 110.36552 * 85.25347 * 15 14 12 45 45 H 1.08993 * 111.00105 * 81.06361 * 16 15 14 46 46 H 1.08996 * 111.00077 * 204.91720 * 16 15 14 47 47 H 0.97002 * 119.99955 * 271.47252 * 19 17 16 48 48 H 0.97001 * 119.99798 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.47357 * 58.54687 * 30 28 14 50 50 H 1.08998 * 109.46865 * 178.54449 * 30 28 14 51 51 H 1.08994 * 109.46919 * 298.54273 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2866 2.1377 -1.0604 5 6 2.7156 3.3508 -0.6819 6 6 2.7220 3.3890 0.6643 7 7 2.2946 2.1630 1.0973 8 6 2.1434 1.7374 2.4911 9 1 1.7800 0.7101 2.5200 10 6 3.4973 1.8192 3.1990 11 6 1.1421 2.6532 3.1981 12 6 0.8935 2.1427 4.5941 13 8 1.4615 1.1451 4.9851 14 7 0.0406 2.7955 5.4083 15 6 -0.7133 4.0146 5.0634 16 6 -1.0183 4.6903 6.4237 17 6 -1.2846 3.4594 7.3301 18 1 -2.3122 3.1133 7.2184 19 7 -0.9914 3.7739 8.7306 20 6 -1.9825 4.2487 9.5476 21 1 -2.9804 4.3908 9.1597 22 6 -1.7048 4.5462 10.8748 23 7 -0.4891 4.3715 11.3479 24 14 -3.0569 5.1931 11.9896 25 1 -4.3235 5.2986 11.2216 26 1 -3.2454 4.2618 13.1308 27 1 -2.6765 6.5338 12.5024 28 6 -0.2931 2.4089 6.7869 29 1 -0.7547 1.4215 6.7937 30 6 0.9736 2.3968 7.6450 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.0010 4.1572 -1.3411 37 1 3.0114 4.2255 1.2832 38 1 4.2106 1.1668 2.6953 39 1 3.8610 2.8463 3.1701 40 1 3.3847 1.5030 4.2360 41 1 0.2043 2.6636 2.6426 42 1 1.5464 3.6642 3.2475 43 1 -0.1068 4.6722 4.4407 44 1 -1.6404 3.7554 4.5523 45 1 -0.1588 5.2585 6.7791 46 1 -1.9026 5.3239 6.3556 47 1 -0.0953 3.6458 9.0791 48 1 -0.2949 4.5798 12.2752 49 1 1.4339 3.3847 7.6274 50 1 0.7150 2.1347 8.6709 51 1 1.6743 1.6624 7.2480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074658977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:30 Heat of formation + Delta-G solvation = 20.391287 kcal Electronic energy + Delta-G solvation = -29608.254878 eV Core-core repulsion = 25736.237133 eV Total energy + Delta-G solvation = -3872.017745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.14904 -41.38112 -39.17127 -36.60593 -35.93570 -34.69291 -33.55039 -32.21404 -31.76809 -30.76323 -29.52411 -28.73882 -26.78031 -25.48854 -24.84310 -24.25386 -23.53451 -22.03113 -21.01184 -20.18932 -19.83559 -19.45884 -18.55042 -17.53102 -17.08652 -16.80360 -16.51706 -16.23834 -15.90890 -15.74918 -15.53310 -15.14292 -14.90751 -14.77135 -14.39107 -14.33850 -14.28505 -13.95004 -13.82673 -13.56668 -13.35494 -13.18350 -13.09641 -12.90816 -12.90180 -12.79973 -12.55232 -12.52412 -12.48614 -12.20311 -12.06719 -12.01214 -11.95747 -11.60976 -11.52979 -11.02992 -10.93162 -10.75539 -10.56563 -9.67087 -9.26859 -9.01392 -7.94525 -5.23059 1.11514 1.49027 1.49795 1.54321 1.59120 1.61380 2.09766 2.21211 2.57377 3.34088 3.39342 3.45116 3.53176 3.68035 3.75998 3.83868 3.92013 3.96501 4.07283 4.19986 4.24626 4.34634 4.37256 4.40411 4.41888 4.46136 4.51088 4.57072 4.66043 4.68222 4.68638 4.76751 4.82840 4.86860 4.87700 4.99736 5.06164 5.09021 5.16768 5.22202 5.26837 5.29579 5.32723 5.44742 5.49723 5.55277 5.88709 6.26607 6.27561 6.55370 7.10008 7.19291 7.35052 8.08955 8.31823 9.29215 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.025587 B = 0.002258 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.043545 B =12398.070279 C =12455.478755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.197 3.803 4 N -0.528 5.528 5 C -0.053 4.053 6 C -0.050 4.050 7 N -0.446 5.446 8 C 0.152 3.848 9 H 0.107 0.893 10 C -0.160 4.160 11 C -0.133 4.133 12 C 0.531 3.469 13 O -0.569 6.569 14 N -0.606 5.606 15 C 0.104 3.896 16 C -0.146 4.146 17 C 0.164 3.836 18 H 0.068 0.932 19 N -0.731 5.731 20 C -0.236 4.236 21 H 0.081 0.919 22 C -0.075 4.075 23 N -0.970 5.970 24 Si 0.970 3.030 25 H -0.263 1.263 26 H -0.298 1.298 27 H -0.296 1.296 28 C 0.135 3.865 29 H 0.065 0.935 30 C -0.143 4.143 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.182 0.818 37 H 0.197 0.803 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.056 0.944 46 H 0.086 0.914 47 H 0.380 0.620 48 H 0.250 0.750 49 H 0.047 0.953 50 H 0.053 0.947 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 -3.301 -23.450 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.065 4.065 4 N -0.247 5.247 5 C -0.200 4.200 6 C -0.183 4.183 7 N -0.128 5.128 8 C 0.049 3.951 9 H 0.125 0.875 10 C -0.218 4.218 11 C -0.174 4.174 12 C 0.321 3.679 13 O -0.449 6.449 14 N -0.340 5.340 15 C -0.018 4.018 16 C -0.187 4.187 17 C 0.054 3.946 18 H 0.086 0.914 19 N -0.373 5.373 20 C -0.368 4.368 21 H 0.099 0.901 22 C -0.268 4.268 23 N -0.621 5.621 24 Si 0.800 3.200 25 H -0.187 1.187 26 H -0.226 1.226 27 H -0.224 1.224 28 C 0.030 3.970 29 H 0.083 0.917 30 C -0.201 4.201 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.199 0.801 37 H 0.214 0.786 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.075 0.925 46 H 0.104 0.896 47 H 0.216 0.784 48 H 0.059 0.941 49 H 0.066 0.934 50 H 0.072 0.928 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.669 -4.109 -23.896 24.522 hybrid contribution 0.001 0.772 2.123 2.259 sum 3.670 -3.336 -21.773 22.330 Atomic orbital electron populations 1.21694 0.93256 1.03187 1.01769 1.20083 0.96980 0.86478 1.04549 1.23666 1.04001 0.97459 0.81386 1.70210 1.19546 1.05489 1.29461 1.22642 1.07230 0.96260 0.93849 1.23040 1.08280 0.90266 0.96669 1.45635 1.48502 1.11787 1.06903 1.21093 0.97135 0.99710 0.77154 0.87519 1.22197 0.94579 1.03144 1.01864 1.21900 1.02015 1.01836 0.91622 1.20337 0.77668 0.82938 0.86978 1.90675 1.50043 1.27145 1.77084 1.48600 1.43522 1.28584 1.13264 1.22530 0.97000 0.85002 0.97278 1.23366 1.02131 0.98619 0.94586 1.21396 0.96169 0.92733 0.84296 0.91415 1.42828 1.10782 1.77512 1.06217 1.19685 0.91971 1.33587 0.91569 0.90115 1.25528 0.98592 1.03757 0.98884 1.69817 1.20701 1.56631 1.14937 0.85112 0.79172 0.76896 0.78802 1.18740 1.22561 1.22368 1.21591 0.95635 0.98216 0.81523 0.91687 1.21808 0.97592 1.01248 0.99487 0.90017 0.93172 0.92822 0.88543 0.89451 0.80078 0.78578 0.92063 0.91171 0.90132 0.86788 0.86168 0.88151 0.89003 0.92476 0.89557 0.78369 0.94128 0.93424 0.92841 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.89 71.98 0.71 -1.17 16 2 C -0.04 -0.63 6.08 29.85 0.18 -0.45 16 3 C 0.20 3.96 7.16 138.13 0.99 4.95 16 4 N -0.53 -12.58 11.25 -188.13 -2.12 -14.69 16 5 C -0.05 -1.02 11.87 83.52 0.99 -0.03 16 6 C -0.05 -0.79 10.70 83.09 0.89 0.10 16 7 N -0.45 -7.65 2.61 -491.88 -1.28 -8.93 16 8 C 0.15 2.47 2.64 44.99 0.12 2.59 16 9 H 0.11 1.86 6.48 -2.39 -0.02 1.84 16 10 C -0.16 -2.76 9.00 71.98 0.65 -2.12 16 11 C -0.13 -1.99 4.18 29.85 0.12 -1.87 16 12 C 0.53 12.30 7.35 87.66 0.64 12.94 16 13 O -0.57 -16.85 12.86 -3.02 -0.04 -16.89 16 14 N -0.61 -14.86 3.08 -788.03 -2.43 -17.29 16 15 C 0.10 1.99 6.69 86.86 0.58 2.57 16 16 C -0.15 -4.05 6.77 31.99 0.22 -3.83 16 17 C 0.16 5.74 3.48 46.18 0.16 5.90 16 18 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16 19 N -0.73 -34.12 4.94 -317.32 -1.57 -35.69 16 20 C -0.24 -12.26 9.96 84.04 0.84 -11.42 16 21 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 22 C -0.08 -4.15 5.50 84.87 0.47 -3.68 16 23 N -0.97 -57.63 13.06 21.65 0.28 -57.34 16 24 Si 0.97 44.44 29.55 68.60 2.03 46.47 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 26 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 28 C 0.14 4.31 3.48 45.34 0.16 4.47 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 30 C -0.14 -5.12 7.93 71.98 0.57 -4.55 16 31 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.14 7.08 -2.39 -0.02 1.12 16 36 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.20 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.04 7.96 -2.39 -0.02 1.02 16 40 H 0.08 1.77 5.95 -2.39 -0.01 1.75 16 41 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.12 1.38 7.79 -2.39 -0.02 1.36 16 43 H 0.10 1.36 7.48 -2.39 -0.02 1.34 16 44 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.38 19.27 5.06 -92.71 -0.47 18.80 16 48 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 49 H 0.05 1.74 8.01 -2.39 -0.02 1.72 16 50 H 0.05 2.19 6.82 -2.39 -0.02 2.17 16 51 H 0.06 2.13 6.74 -2.39 -0.02 2.12 16 Total: -1.00 -68.78 402.47 3.61 -65.17 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: 0.44 Total: 34.80 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 8.29 Total: 4.40 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -7.11 Total: -133.94 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.04 Total: -16.89 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -68.78 3.61 -65.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074658977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.557 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds