Wall clock time and date at job start Tue Mar 31 2020 18:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46824 * 2 1 4 4 N 1.30496 * 125.65380 * 89.97844 * 3 2 1 5 5 C 1.34130 * 109.26014 * 180.02562 * 4 3 2 6 6 C 1.34674 * 108.01710 * 359.97438 * 5 4 3 7 7 N 1.35054 * 125.64688 * 270.28764 * 3 2 1 8 8 C 1.46496 * 126.39961 * 359.97438 * 7 3 2 9 9 H 1.08999 * 109.46979 * 0.14582 * 8 7 3 10 10 C 1.53003 * 109.47083 * 240.14980 * 8 7 3 11 11 C 1.53000 * 109.47031 * 120.14693 * 8 7 3 12 12 C 1.50698 * 109.46836 * 184.99920 * 11 8 7 13 13 O 1.21286 * 120.00308 * 0.02562 * 12 11 8 14 14 N 1.34776 * 119.99742 * 179.97438 * 12 11 8 15 15 C 1.47426 * 125.64967 * 359.69598 * 14 12 11 16 16 C 1.55129 * 104.72226 * 155.81607 * 15 14 12 17 17 C 1.55154 * 101.48732 * 37.29574 * 16 15 14 18 18 H 1.09003 * 110.71985 * 205.97201 * 17 16 15 19 19 N 1.46498 * 110.72289 * 82.69458 * 17 16 15 20 20 C 1.36939 * 119.99942 * 91.47203 * 19 17 16 21 21 H 1.08004 * 119.99785 * 0.02562 * 20 19 17 22 22 C 1.38817 * 120.00013 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99909 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99817 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47306 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46666 * 120.00429 * 24 22 20 27 27 H 1.48495 * 109.47069 * 240.00364 * 24 22 20 28 28 C 1.47027 * 125.64801 * 180.02562 * 14 12 11 29 29 H 1.09003 * 109.87930 * 300.58978 * 28 14 12 30 30 C 1.52992 * 109.88550 * 61.60187 * 28 14 12 31 31 H 1.09004 * 109.46853 * 300.00185 * 1 2 3 32 32 H 1.09002 * 109.47219 * 59.99971 * 1 2 3 33 33 H 1.09003 * 109.46928 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47125 * 239.99853 * 2 1 3 35 35 H 1.09002 * 109.46808 * 119.99372 * 2 1 3 36 36 H 1.07997 * 125.98942 * 179.97438 * 5 4 3 37 37 H 1.08002 * 126.58669 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.46888 * 299.99658 * 10 8 7 39 39 H 1.08998 * 109.47298 * 59.99934 * 10 8 7 40 40 H 1.09001 * 109.46719 * 179.97438 * 10 8 7 41 41 H 1.08998 * 109.47038 * 304.99866 * 11 8 7 42 42 H 1.08996 * 109.46711 * 65.00255 * 11 8 7 43 43 H 1.08999 * 110.36337 * 274.74476 * 15 14 12 44 44 H 1.09002 * 110.36353 * 37.06606 * 15 14 12 45 45 H 1.09002 * 111.19180 * 279.19381 * 16 15 14 46 46 H 1.08996 * 110.94001 * 155.28948 * 16 15 14 47 47 H 0.96998 * 119.99919 * 271.48377 * 19 17 16 48 48 H 0.97003 * 119.99980 * 179.97438 * 23 22 20 49 49 H 1.09010 * 109.47144 * 58.55102 * 30 28 14 50 50 H 1.08998 * 109.47143 * 178.54388 * 30 28 14 51 51 H 1.09002 * 109.47597 * 298.54859 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2854 2.1381 1.0603 5 6 2.7139 3.3515 0.6818 6 6 2.7273 3.3872 -0.6644 7 7 2.2894 2.1648 -1.0975 8 6 2.1328 1.7412 -2.4911 9 1 1.7675 0.7146 -2.5199 10 6 3.4845 1.8216 -3.2035 11 6 1.1306 2.6592 -3.1936 12 6 0.8765 2.1509 -4.5893 13 8 1.4410 1.1523 -4.9832 14 7 0.0210 2.8053 -5.3995 15 6 -0.7348 4.0214 -5.0484 16 6 -1.0402 4.7021 -6.4085 17 6 -1.3108 3.4728 -7.3155 18 1 -1.0963 3.7079 -8.3581 19 7 -2.6916 3.0084 -7.1609 20 6 -3.6726 3.4910 -7.9856 21 1 -3.4282 4.2136 -8.7501 22 6 -4.9810 3.0506 -7.8394 23 7 -5.2786 2.1697 -6.9080 24 14 -6.3190 3.7084 -8.9648 25 1 -5.7288 4.6797 -9.9205 26 1 -6.9303 2.5834 -9.7171 27 1 -7.3615 4.3846 -8.1517 28 6 -0.3181 2.4208 -6.7775 29 1 0.5825 2.4097 -7.3915 30 6 -0.9705 1.0370 -6.7860 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.9983 4.1583 1.3410 37 1 3.0218 4.2219 -1.2833 38 1 3.8499 2.8481 -3.1747 39 1 4.1985 1.1675 -2.7030 40 1 3.3680 1.5059 -4.2403 41 1 0.1947 2.6704 -2.6350 42 1 1.5363 3.6696 -3.2432 43 1 -1.6607 3.7581 -4.5370 44 1 -0.1288 4.6776 -4.4238 45 1 -0.1815 5.2702 -6.7664 46 1 -1.9234 5.3368 -6.3369 47 1 -2.9110 2.3593 -6.4744 48 1 -6.1929 1.8622 -6.8056 49 1 -1.8656 1.0534 -6.1642 50 1 -1.2424 0.7698 -7.8072 51 1 -0.2684 0.3017 -6.3928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074658978.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:36 Heat of formation + Delta-G solvation = 36.423335 kcal Electronic energy + Delta-G solvation = -29894.504803 eV Core-core repulsion = 26023.182259 eV Total energy + Delta-G solvation = -3871.322543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.33813 -40.20369 -37.94058 -35.68513 -34.10132 -33.96870 -31.90611 -31.05462 -30.69813 -29.25672 -28.74430 -27.73773 -25.31841 -24.16289 -23.70103 -23.35843 -22.35181 -21.12677 -19.87128 -19.32086 -18.57958 -17.76683 -17.39070 -16.33337 -16.23011 -15.73936 -15.47734 -14.96896 -14.67977 -14.41000 -14.14236 -13.98498 -13.83816 -13.60951 -13.57257 -13.32317 -13.21879 -12.90003 -12.65658 -12.45926 -12.34369 -12.09524 -11.84015 -11.77763 -11.70932 -11.46708 -11.37571 -11.23632 -11.07956 -11.00927 -10.84114 -10.72378 -10.32151 -10.12661 -10.09279 -9.79149 -9.71037 -9.57447 -9.04328 -8.47806 -8.46021 -7.11418 -5.89490 -3.19424 1.90941 2.48321 2.62932 3.04053 3.17770 3.35388 3.41583 3.43739 4.20581 4.23958 4.42891 4.48125 4.50634 4.65767 4.81363 4.94645 4.95184 5.07426 5.11912 5.18847 5.21178 5.25415 5.36360 5.39144 5.43219 5.47910 5.54475 5.58325 5.61354 5.65183 5.68023 5.73230 5.81353 5.89860 5.93193 6.01025 6.02526 6.23072 6.24871 6.32708 6.41576 6.52089 6.61911 6.65351 6.75987 6.92587 7.06243 7.59730 7.67863 8.00602 8.19785 8.28640 9.40535 9.94673 10.29508 11.32644 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.002640 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.706564 B =10601.987372 C =11018.159036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 C 0.211 3.789 4 N -0.494 5.494 5 C -0.031 4.031 6 C -0.056 4.056 7 N -0.447 5.447 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.164 4.164 11 C -0.147 4.147 12 C 0.533 3.467 13 O -0.544 6.544 14 N -0.603 5.603 15 C 0.103 3.897 16 C -0.160 4.160 17 C 0.172 3.828 18 H 0.071 0.929 19 N -0.713 5.713 20 C -0.245 4.245 21 H 0.072 0.928 22 C -0.009 4.009 23 N -0.929 5.929 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.126 3.874 29 H 0.071 0.929 30 C -0.149 4.149 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.167 0.833 37 H 0.170 0.830 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.088 0.912 47 H 0.388 0.612 48 H 0.256 0.744 49 H 0.065 0.935 50 H 0.067 0.933 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.292 1.288 10.069 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.052 4.052 4 N -0.212 5.212 5 C -0.179 4.179 6 C -0.189 4.189 7 N -0.130 5.130 8 C 0.044 3.956 9 H 0.129 0.871 10 C -0.222 4.222 11 C -0.187 4.187 12 C 0.320 3.680 13 O -0.424 6.424 14 N -0.336 5.336 15 C -0.020 4.020 16 C -0.201 4.201 17 C 0.060 3.940 18 H 0.089 0.911 19 N -0.355 5.355 20 C -0.376 4.376 21 H 0.090 0.910 22 C -0.206 4.206 23 N -0.577 5.577 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.023 3.977 29 H 0.089 0.911 30 C -0.207 4.207 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.184 0.816 37 H 0.187 0.813 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.066 0.934 49 H 0.084 0.916 50 H 0.086 0.914 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.397 0.491 10.429 19.439 hybrid contribution -0.867 0.823 -1.100 1.625 sum 15.530 1.314 9.329 18.165 Atomic orbital electron populations 1.21752 0.93705 1.02515 1.02619 1.19995 0.96627 0.87433 1.03931 1.23287 1.03910 0.96637 0.81342 1.70231 1.18428 1.04269 1.28284 1.22244 1.06680 0.96271 0.92739 1.22594 1.09484 0.90148 0.96708 1.45623 1.48443 1.11813 1.07131 1.21175 0.97173 0.99895 0.77394 0.87070 1.22274 0.94415 1.02408 1.03082 1.21955 1.01283 1.01010 0.94479 1.19721 0.78782 0.83464 0.86014 1.90660 1.50172 1.25469 1.76057 1.48650 1.42227 1.27898 1.14865 1.22393 0.95573 0.85349 0.98663 1.23563 1.01488 0.99746 0.95300 1.21192 0.85905 0.90076 0.96877 0.91133 1.42562 1.01217 1.51085 1.40681 1.19277 0.87791 1.19813 1.10739 0.90961 1.24753 0.97446 0.99372 0.98989 1.69664 1.18882 1.34225 1.34937 0.86125 0.82135 0.78026 0.79898 1.20509 1.21824 1.21849 1.22050 0.97781 0.96593 0.81320 0.91088 1.21920 1.00548 0.95174 1.03063 0.91851 0.92708 0.91455 0.90367 0.88786 0.81563 0.81285 0.92347 0.92045 0.88268 0.88270 0.88375 0.90869 0.91786 0.91981 0.89350 0.77547 0.93414 0.91586 0.91438 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.89 37.16 0.37 -1.00 16 2 C -0.04 -0.38 6.07 -27.88 -0.17 -0.55 16 3 C 0.21 2.49 7.16 -155.41 -1.11 1.37 16 4 N -0.49 -6.60 11.25 -10.81 -0.12 -6.72 16 5 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 6 C -0.06 -0.57 10.70 -16.56 -0.18 -0.74 16 7 N -0.45 -4.76 2.61 -106.83 -0.28 -5.04 16 8 C 0.15 1.49 2.64 -67.93 -0.18 1.31 16 9 H 0.11 1.20 6.49 -51.93 -0.34 0.86 16 10 C -0.16 -1.58 8.99 37.16 0.33 -1.25 16 11 C -0.15 -1.52 4.19 -27.88 -0.12 -1.64 16 12 C 0.53 7.24 7.36 -10.99 -0.08 7.16 16 13 O -0.54 -8.62 13.00 5.55 0.07 -8.55 16 14 N -0.60 -8.67 3.06 -162.87 -0.50 -9.17 16 15 C 0.10 1.39 6.68 -2.41 -0.02 1.37 16 16 C -0.16 -2.37 6.78 -24.46 -0.17 -2.53 16 17 C 0.17 3.03 3.48 -66.10 -0.23 2.80 16 18 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 19 N -0.71 -16.07 4.54 -51.65 -0.23 -16.31 16 20 C -0.25 -6.26 9.96 -15.06 -0.15 -6.41 16 21 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 23 N -0.93 -26.60 13.06 55.49 0.72 -25.87 16 24 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 C 0.13 2.04 3.42 -66.95 -0.23 1.81 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 C -0.15 -2.65 8.51 37.15 0.32 -2.33 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.65 7.09 -51.93 -0.37 0.28 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.06 0.50 7.95 -51.93 -0.41 0.09 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.10 1.12 5.95 -51.93 -0.31 0.81 16 41 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.10 0.86 7.80 -51.93 -0.41 0.46 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 0.68 7.48 -51.93 -0.39 0.29 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 47 H 0.39 9.45 5.67 -40.82 -0.23 9.22 16 48 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.07 1.32 6.20 -51.92 -0.32 1.00 16 50 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 51 H 0.05 0.96 6.88 -51.93 -0.36 0.60 16 LS Contribution 403.02 15.07 6.07 6.07 Total: -1.00 -30.41 403.02 -9.80 -40.20 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -8.59 Total: 10.61 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.92 Total: -1.53 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.41 Total: -63.11 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.07 Total: -8.55 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.41 -9.80 -40.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074658978.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.627 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds