Wall clock time and date at job start Tue Mar 31 2020 19:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46899 * 2 1 4 4 C 1.50699 * 109.47289 * 119.99752 * 2 1 3 5 5 C 1.35361 * 126.38436 * 325.26438 * 4 2 1 6 6 C 1.41501 * 105.50065 * 180.13733 * 5 4 2 7 7 C 1.47716 * 126.52076 * 179.89774 * 6 5 4 8 8 O 1.21574 * 119.99541 * 359.71213 * 7 6 5 9 9 N 1.34777 * 120.00135 * 179.71522 * 7 6 5 10 10 C 1.46496 * 119.99613 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.47581 * 34.99768 * 10 9 7 12 12 C 1.53004 * 109.46984 * 274.99541 * 10 9 7 13 13 C 1.53007 * 109.46800 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47210 * 59.99994 * 13 12 10 15 15 C 1.52995 * 109.47206 * 299.99865 * 14 13 12 16 16 C 1.52996 * 109.47326 * 60.00320 * 15 14 13 17 17 H 1.08997 * 109.47389 * 59.99790 * 16 15 14 18 18 N 1.46500 * 109.47122 * 180.02562 * 16 15 14 19 19 C 1.36940 * 119.99788 * 274.99601 * 18 16 15 20 20 H 1.08004 * 119.99698 * 0.02562 * 19 18 16 21 21 C 1.38805 * 120.00239 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00240 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00082 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47266 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46948 * 119.99857 * 23 21 19 26 26 H 1.48499 * 109.47595 * 240.00003 * 23 21 19 27 27 N 1.31815 * 106.96518 * 359.63726 * 6 5 4 28 28 N 1.28465 * 110.06845 * 0.22773 * 27 6 5 29 29 C 1.46507 * 124.88192 * 179.97438 * 28 27 6 30 30 H 1.09000 * 109.47229 * 60.00282 * 1 2 3 31 31 H 1.08997 * 109.46905 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47277 * 299.99827 * 1 2 3 33 33 H 1.09002 * 109.47277 * 240.00173 * 2 1 3 34 34 H 1.09000 * 109.47227 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47507 * 300.00308 * 3 2 1 36 36 H 1.08994 * 109.47282 * 59.99776 * 3 2 1 37 37 H 1.07997 * 127.25287 * 0.02562 * 5 4 2 38 38 H 0.96996 * 119.99871 * 359.97438 * 9 7 6 39 39 H 1.09005 * 109.46965 * 300.00196 * 12 10 9 40 40 H 1.08998 * 109.47107 * 60.00144 * 12 10 9 41 41 H 1.08996 * 109.46746 * 299.99171 * 13 12 10 42 42 H 1.09008 * 109.46534 * 179.97438 * 13 12 10 43 43 H 1.09002 * 109.47000 * 179.97438 * 14 13 12 44 44 H 1.09005 * 109.47370 * 59.99767 * 14 13 12 45 45 H 1.08997 * 109.47058 * 299.99907 * 15 14 13 46 46 H 1.08998 * 109.47069 * 180.02562 * 15 14 13 47 47 H 0.96999 * 120.00870 * 94.99982 * 18 16 15 48 48 H 0.96997 * 120.00336 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.46916 * 90.02292 * 29 28 27 50 50 H 1.08998 * 109.46876 * 210.01872 * 29 28 27 51 51 H 1.08998 * 109.46648 * 330.01989 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.4558 -0.7003 2.4551 6 6 2.2891 -1.5007 3.2720 7 6 2.0892 -1.8009 4.7044 8 8 1.1328 -1.3375 5.2948 9 7 2.9671 -2.5883 5.3568 10 6 2.7685 -2.8864 6.7773 11 1 1.7017 -2.9659 6.9863 12 6 3.3717 -1.7633 7.6233 13 6 3.1648 -2.0750 9.1069 14 6 3.8521 -3.3979 9.4508 15 6 3.2490 -4.5209 8.6049 16 6 3.4559 -4.2094 7.1213 17 1 4.5226 -4.1297 6.9121 18 7 2.8778 -5.2845 6.3113 19 6 3.6113 -6.4093 6.0425 20 1 4.6157 -6.5039 6.4280 21 6 3.0638 -7.4278 5.2746 22 7 1.8400 -7.3124 4.8043 23 14 4.0646 -8.9617 4.9073 24 1 5.4003 -8.8460 5.5459 25 1 3.3604 -10.1530 5.4461 26 1 4.2286 -9.1060 3.4384 27 7 3.2746 -1.9321 2.5103 28 7 3.1390 -1.4795 1.3157 29 6 4.0538 -1.7573 0.2056 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 0.5513 -0.1878 2.7476 38 1 3.7300 -2.9583 4.8856 39 1 4.4386 -1.6839 7.4144 40 1 2.8823 -0.8207 7.3780 41 1 2.0981 -2.1545 9.3161 42 1 3.5950 -1.2749 9.7096 43 1 3.7051 -3.6196 10.5079 44 1 4.9189 -3.3182 9.2416 45 1 2.1823 -4.6006 8.8141 46 1 3.7384 -5.4635 8.8502 47 1 1.9756 -5.1998 5.9653 48 1 1.4575 -8.0239 4.2674 49 1 3.7251 -2.6536 -0.3205 50 1 4.0567 -0.9124 -0.4830 51 1 5.0602 -1.9127 0.5944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085194604.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:14 Heat of formation + Delta-G solvation = 28.357660 kcal Electronic energy + Delta-G solvation = -29724.119614 eV Core-core repulsion = 25852.447317 eV Total energy + Delta-G solvation = -3871.672297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.61903 -39.41979 -37.59758 -35.95665 -33.96861 -33.61722 -33.36315 -31.07635 -29.77789 -29.22353 -27.88878 -27.43703 -27.00352 -23.73411 -23.46493 -22.68360 -21.49441 -20.95898 -20.22824 -19.69681 -18.88900 -17.46133 -16.98455 -16.26807 -16.22212 -15.74137 -14.90939 -14.75587 -14.42918 -14.21953 -14.00577 -13.89388 -13.71904 -13.55583 -13.33221 -13.27769 -12.88599 -12.74352 -12.73130 -12.54916 -12.41060 -12.03890 -12.01659 -11.80605 -11.47958 -11.14342 -11.02703 -10.88929 -10.76725 -10.69095 -10.60753 -10.50281 -10.26562 -10.09083 -9.74233 -9.60212 -9.52053 -8.99058 -8.86710 -8.83958 -8.41719 -6.91871 -5.72074 -3.01301 1.82532 2.23419 2.50357 3.43894 3.49513 3.51825 3.63789 3.85912 4.26863 4.38485 4.59786 4.60375 4.81598 4.93146 4.99952 5.08335 5.14914 5.21786 5.23064 5.31179 5.35436 5.42032 5.53232 5.57329 5.59288 5.60009 5.65697 5.79327 5.81007 5.84914 5.91285 5.95697 5.97756 6.03755 6.05758 6.13328 6.18789 6.41734 6.51261 6.53190 6.58206 6.60563 6.65619 6.82260 6.93573 6.99830 7.18238 7.73124 7.92106 8.20833 8.44920 8.71917 9.56657 10.14086 10.49275 11.50064 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.003712 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.519122 B = 7541.239351 C = 9664.213157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.022 4.022 3 C -0.143 4.143 4 C 0.010 3.990 5 C -0.174 4.174 6 C -0.008 4.008 7 C 0.604 3.396 8 O -0.545 6.545 9 N -0.693 5.693 10 C 0.141 3.859 11 H 0.085 0.915 12 C -0.124 4.124 13 C -0.113 4.113 14 C -0.119 4.119 15 C -0.133 4.133 16 C 0.174 3.826 17 H 0.050 0.950 18 N -0.721 5.721 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.903 3.097 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.293 1.293 27 N -0.254 5.254 28 N -0.283 5.283 29 C 0.086 3.914 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.158 0.842 38 H 0.409 0.591 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.385 0.615 48 H 0.253 0.747 49 H 0.084 0.916 50 H 0.091 0.909 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 17.826 -8.021 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.042 4.042 3 C -0.201 4.201 4 C -0.114 4.114 5 C -0.202 4.202 6 C -0.168 4.168 7 C 0.388 3.612 8 O -0.422 6.422 9 N -0.342 5.342 10 C 0.035 3.965 11 H 0.103 0.897 12 C -0.163 4.163 13 C -0.151 4.151 14 C -0.158 4.158 15 C -0.174 4.174 16 C 0.063 3.937 17 H 0.068 0.932 18 N -0.362 5.362 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.577 5.577 23 Si 0.735 3.265 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.221 1.221 27 N -0.089 5.089 28 N -0.071 5.071 29 C -0.055 4.055 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.176 0.824 38 H 0.244 0.756 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.219 0.781 48 H 0.063 0.937 49 H 0.103 0.897 50 H 0.110 0.890 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.668 17.297 -7.703 19.287 hybrid contribution -0.071 -0.828 -0.698 1.085 sum 3.597 16.470 -8.401 18.835 Atomic orbital electron populations 1.21826 0.93059 1.02771 1.02458 1.19636 0.96811 0.95240 0.92563 1.21853 1.00924 0.94761 1.02587 1.21294 0.91291 1.00714 0.98053 1.21407 1.02711 1.04925 0.91176 1.21966 0.95858 1.03523 0.95450 1.16851 0.82281 0.78655 0.83372 1.90743 1.30538 1.53486 1.67418 1.45754 1.28202 1.48967 1.11234 1.21335 1.01421 0.94706 0.78997 0.89685 1.21882 1.00881 0.98617 0.94949 1.21471 1.00987 0.97282 0.95385 1.21581 0.99760 0.95186 0.99224 1.22215 1.00828 0.97665 0.96649 1.20457 0.96247 0.86491 0.90515 0.93196 1.42418 1.16907 1.16656 1.60183 1.19244 0.96929 0.94498 1.26130 0.91188 1.24720 0.96526 0.98662 1.00853 1.69688 1.14365 1.33669 1.39969 0.86175 0.79158 0.83632 0.77553 1.20598 1.21976 1.22065 1.73617 1.24210 1.19728 0.91318 1.45274 1.19382 1.34542 1.07871 1.22126 0.93857 1.03123 0.86398 0.91924 0.92012 0.91707 0.90305 0.92823 0.91844 0.91810 0.82422 0.75589 0.92053 0.91855 0.91922 0.92426 0.92715 0.92419 0.92418 0.91627 0.78107 0.93675 0.89700 0.89035 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.78 37.16 0.33 -0.82 16 2 C -0.02 -0.19 2.89 -91.77 -0.27 -0.45 16 3 C -0.14 -1.00 9.17 37.16 0.34 -0.66 16 4 C 0.01 0.13 5.84 -82.21 -0.48 -0.35 16 5 C -0.17 -2.64 9.95 -39.37 -0.39 -3.03 16 6 C -0.01 -0.14 7.13 -82.76 -0.59 -0.73 16 7 C 0.60 11.89 7.79 -12.39 -0.10 11.79 16 8 O -0.55 -11.80 16.59 5.30 0.09 -11.71 16 9 N -0.69 -13.08 4.91 -54.79 -0.27 -13.34 16 10 C 0.14 2.58 1.98 -67.93 -0.13 2.45 16 11 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 12 C -0.12 -1.90 5.50 -26.73 -0.15 -2.05 16 13 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 14 C -0.12 -1.70 5.92 -26.74 -0.16 -1.86 16 15 C -0.13 -2.39 5.50 -26.74 -0.15 -2.53 16 16 C 0.17 3.45 2.29 -67.93 -0.16 3.30 16 17 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 18 N -0.72 -18.04 4.95 -53.43 -0.26 -18.31 16 19 C -0.24 -6.51 9.93 -15.06 -0.15 -6.65 16 20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 23 Si 0.90 22.51 29.55 -169.99 -5.02 17.48 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 N -0.25 -4.25 11.67 33.42 0.39 -3.86 16 28 N -0.28 -3.72 3.70 -63.85 -0.24 -3.95 16 29 C 0.09 0.70 10.89 59.85 0.65 1.35 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.54 7.35 -51.93 -0.38 0.16 16 33 H 0.08 0.54 7.42 -51.93 -0.39 0.15 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.16 2.22 7.46 -52.49 -0.39 1.83 16 38 H 0.41 7.77 8.33 -40.82 -0.34 7.43 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.39 10.66 7.80 -40.82 -0.32 10.34 16 48 H 0.25 7.54 8.31 -40.82 -0.34 7.21 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.09 0.47 7.44 -51.93 -0.39 0.08 16 51 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 410.47 15.07 6.19 6.19 Total: -1.00 -33.87 410.47 -8.96 -42.83 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -8.90 Total: 14.78 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.65 Total: -2.38 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: 0.35 Total: -67.19 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.87 -8.96 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085194604.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.189 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds