Wall clock time and date at job start Tue Mar 31 2020 19:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46899 * 2 1 4 4 C 1.50699 * 109.47289 * 119.99752 * 2 1 3 5 5 C 1.35361 * 126.38436 * 325.26438 * 4 2 1 6 6 C 1.41501 * 105.50065 * 180.13733 * 5 4 2 7 7 C 1.47716 * 126.52076 * 179.89774 * 6 5 4 8 8 O 1.21574 * 119.99541 * 359.71213 * 7 6 5 9 9 N 1.34777 * 120.00135 * 179.71522 * 7 6 5 10 10 C 1.46496 * 119.99613 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.47581 * 34.99768 * 10 9 7 12 12 C 1.53004 * 109.46984 * 274.99541 * 10 9 7 13 13 C 1.53007 * 109.46800 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47210 * 59.99994 * 13 12 10 15 15 C 1.52995 * 109.47206 * 299.99865 * 14 13 12 16 16 C 1.52996 * 109.47326 * 60.00320 * 15 14 13 17 17 H 1.08997 * 109.47389 * 59.99790 * 16 15 14 18 18 N 1.46500 * 109.47122 * 180.02562 * 16 15 14 19 19 C 1.36940 * 119.99788 * 274.99601 * 18 16 15 20 20 H 1.08004 * 119.99698 * 0.02562 * 19 18 16 21 21 C 1.38805 * 120.00239 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00240 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00082 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47266 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46948 * 119.99857 * 23 21 19 26 26 H 1.48499 * 109.47595 * 240.00003 * 23 21 19 27 27 N 1.31815 * 106.96518 * 359.63726 * 6 5 4 28 28 N 1.28465 * 110.06845 * 0.22773 * 27 6 5 29 29 C 1.46507 * 124.88192 * 179.97438 * 28 27 6 30 30 H 1.09000 * 109.47229 * 60.00282 * 1 2 3 31 31 H 1.08997 * 109.46905 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47277 * 299.99827 * 1 2 3 33 33 H 1.09002 * 109.47277 * 240.00173 * 2 1 3 34 34 H 1.09000 * 109.47227 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47507 * 300.00308 * 3 2 1 36 36 H 1.08994 * 109.47282 * 59.99776 * 3 2 1 37 37 H 1.07997 * 127.25287 * 0.02562 * 5 4 2 38 38 H 0.96996 * 119.99871 * 359.97438 * 9 7 6 39 39 H 1.09005 * 109.46965 * 300.00196 * 12 10 9 40 40 H 1.08998 * 109.47107 * 60.00144 * 12 10 9 41 41 H 1.08996 * 109.46746 * 299.99171 * 13 12 10 42 42 H 1.09008 * 109.46534 * 179.97438 * 13 12 10 43 43 H 1.09002 * 109.47000 * 179.97438 * 14 13 12 44 44 H 1.09005 * 109.47370 * 59.99767 * 14 13 12 45 45 H 1.08997 * 109.47058 * 299.99907 * 15 14 13 46 46 H 1.08998 * 109.47069 * 180.02562 * 15 14 13 47 47 H 0.96999 * 120.00870 * 94.99982 * 18 16 15 48 48 H 0.96997 * 120.00336 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.46916 * 90.02292 * 29 28 27 50 50 H 1.08998 * 109.46876 * 210.01872 * 29 28 27 51 51 H 1.08998 * 109.46648 * 330.01989 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.4558 -0.7003 2.4551 6 6 2.2891 -1.5007 3.2720 7 6 2.0892 -1.8009 4.7044 8 8 1.1328 -1.3375 5.2948 9 7 2.9671 -2.5883 5.3568 10 6 2.7685 -2.8864 6.7773 11 1 1.7017 -2.9659 6.9863 12 6 3.3717 -1.7633 7.6233 13 6 3.1648 -2.0750 9.1069 14 6 3.8521 -3.3979 9.4508 15 6 3.2490 -4.5209 8.6049 16 6 3.4559 -4.2094 7.1213 17 1 4.5226 -4.1297 6.9121 18 7 2.8778 -5.2845 6.3113 19 6 3.6113 -6.4093 6.0425 20 1 4.6157 -6.5039 6.4280 21 6 3.0638 -7.4278 5.2746 22 7 1.8400 -7.3124 4.8043 23 14 4.0646 -8.9617 4.9073 24 1 5.4003 -8.8460 5.5459 25 1 3.3604 -10.1530 5.4461 26 1 4.2286 -9.1060 3.4384 27 7 3.2746 -1.9321 2.5103 28 7 3.1390 -1.4795 1.3157 29 6 4.0538 -1.7573 0.2056 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 0.5513 -0.1878 2.7476 38 1 3.7300 -2.9583 4.8856 39 1 4.4386 -1.6839 7.4144 40 1 2.8823 -0.8207 7.3780 41 1 2.0981 -2.1545 9.3161 42 1 3.5950 -1.2749 9.7096 43 1 3.7051 -3.6196 10.5079 44 1 4.9189 -3.3182 9.2416 45 1 2.1823 -4.6006 8.8141 46 1 3.7384 -5.4635 8.8502 47 1 1.9756 -5.1998 5.9653 48 1 1.4575 -8.0239 4.2674 49 1 3.7251 -2.6536 -0.3205 50 1 4.0567 -0.9124 -0.4830 51 1 5.0602 -1.9127 0.5944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085194604.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:13 Heat of formation + Delta-G solvation = 5.907841 kcal Electronic energy + Delta-G solvation = -29725.093111 eV Core-core repulsion = 25852.447317 eV Total energy + Delta-G solvation = -3872.645794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.73029 -40.93768 -39.10993 -36.70924 -35.82728 -35.12731 -34.39715 -33.00736 -30.94553 -30.46950 -29.48722 -28.12578 -28.02129 -25.67754 -24.70689 -23.61073 -22.89914 -22.43160 -21.44963 -21.01315 -20.16964 -19.18457 -18.37524 -17.51281 -17.33878 -17.20670 -16.66859 -15.88245 -15.81244 -15.50571 -15.36168 -15.19173 -14.85147 -14.72624 -14.66786 -14.62239 -14.07890 -13.92162 -13.72291 -13.55204 -13.47155 -13.42315 -12.99159 -12.93090 -12.86175 -12.59092 -12.22690 -12.18447 -12.11636 -12.03273 -12.01971 -11.79264 -11.72477 -11.67795 -11.43864 -11.28551 -11.06314 -10.84872 -10.20501 -9.93271 -9.87308 -9.00568 -7.91923 -5.21218 0.54188 1.11377 1.45473 1.46448 1.56335 1.57028 2.21458 2.41768 2.55659 3.31982 3.41676 3.51154 3.67639 3.79632 3.86801 4.06653 4.14689 4.19382 4.25976 4.30612 4.32398 4.39339 4.43234 4.46150 4.49918 4.58180 4.61571 4.61937 4.69485 4.72582 4.83344 4.95738 4.98787 4.99806 5.00965 5.14208 5.15473 5.24647 5.29343 5.30292 5.33255 5.38701 5.42911 5.46227 5.51847 5.55242 5.67266 5.87807 6.27427 6.48862 6.91719 7.19919 7.33648 8.07462 8.32139 9.31675 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.003712 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.519122 B = 7541.239351 C = 9664.213157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.020 4.020 3 C -0.140 4.140 4 C 0.030 3.970 5 C -0.198 4.198 6 C -0.043 4.043 7 C 0.599 3.401 8 O -0.576 6.576 9 N -0.692 5.692 10 C 0.146 3.854 11 H 0.056 0.944 12 C -0.115 4.115 13 C -0.109 4.109 14 C -0.109 4.109 15 C -0.127 4.127 16 C 0.173 3.827 17 H 0.055 0.945 18 N -0.733 5.733 19 C -0.230 4.230 20 H 0.080 0.920 21 C -0.076 4.076 22 N -0.971 5.971 23 Si 0.970 3.030 24 H -0.263 1.263 25 H -0.297 1.297 26 H -0.297 1.297 27 N -0.278 5.278 28 N -0.277 5.277 29 C 0.071 3.929 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.158 0.842 38 H 0.407 0.593 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.367 0.633 48 H 0.247 0.753 49 H 0.094 0.906 50 H 0.131 0.869 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.257 19.221 -9.018 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.040 4.040 3 C -0.197 4.197 4 C -0.095 4.095 5 C -0.226 4.226 6 C -0.201 4.201 7 C 0.384 3.616 8 O -0.455 6.455 9 N -0.339 5.339 10 C 0.041 3.959 11 H 0.074 0.926 12 C -0.154 4.154 13 C -0.147 4.147 14 C -0.147 4.147 15 C -0.167 4.167 16 C 0.064 3.936 17 H 0.073 0.927 18 N -0.371 5.371 19 C -0.361 4.361 20 H 0.097 0.903 21 C -0.268 4.268 22 N -0.623 5.623 23 Si 0.800 3.200 24 H -0.187 1.187 25 H -0.225 1.225 26 H -0.225 1.225 27 N -0.115 5.115 28 N -0.065 5.065 29 C -0.067 4.067 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.175 0.825 38 H 0.242 0.758 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.198 0.802 48 H 0.056 0.944 49 H 0.113 0.887 50 H 0.149 0.851 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.839 18.713 -8.659 21.430 hybrid contribution -0.709 -1.201 -0.459 1.468 sum 5.130 17.512 -9.117 20.399 Atomic orbital electron populations 1.21848 0.92920 1.02081 1.03359 1.19863 0.96874 0.95986 0.91257 1.21836 1.01205 0.93486 1.03214 1.21886 0.90037 0.99077 0.98492 1.21565 1.03186 1.05636 0.92244 1.21841 0.97688 1.05698 0.94896 1.17208 0.81770 0.78217 0.84378 1.90698 1.31620 1.54785 1.68405 1.45780 1.27980 1.48718 1.11471 1.21283 0.99788 0.95320 0.79507 0.92566 1.21821 1.01271 0.96717 0.95582 1.21478 1.00918 0.98015 0.94271 1.21520 1.00130 0.93537 0.99554 1.22075 1.00179 0.98833 0.95651 1.20668 0.96098 0.85718 0.91079 0.92715 1.42595 1.16056 1.17485 1.60987 1.19633 0.97132 0.94819 1.24555 0.90259 1.25521 0.97634 1.01943 1.01702 1.69869 1.16342 1.34495 1.41546 0.85113 0.78380 0.79607 0.76910 1.18667 1.22487 1.22451 1.73529 1.24379 1.20676 0.92866 1.45785 1.19888 1.33207 1.07624 1.22619 0.93206 1.05389 0.85510 0.89291 0.93507 0.92601 0.87704 0.92356 0.89366 0.93087 0.82462 0.75763 0.90561 0.92422 0.92572 0.89215 0.90502 0.91032 0.93879 0.92964 0.80174 0.94410 0.88723 0.85111 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.78 71.98 0.63 -1.45 16 2 C -0.02 -0.28 2.89 -11.54 -0.03 -0.31 16 3 C -0.14 -1.53 9.17 71.98 0.66 -0.87 16 4 C 0.03 0.72 5.84 41.40 0.24 0.96 16 5 C -0.20 -6.22 9.95 22.41 0.22 -6.00 16 6 C -0.04 -1.61 7.13 42.46 0.30 -1.30 16 7 C 0.60 25.03 7.79 86.75 0.68 25.71 16 8 O -0.58 -26.58 16.59 -3.95 -0.07 -26.65 16 9 N -0.69 -27.41 4.91 -445.52 -2.19 -29.60 16 10 C 0.15 5.55 1.98 45.00 0.09 5.64 16 11 H 0.06 2.46 7.58 -2.39 -0.02 2.44 16 12 C -0.11 -3.44 5.50 30.60 0.17 -3.27 16 13 C -0.11 -2.76 5.92 30.59 0.18 -2.57 16 14 C -0.11 -2.86 5.92 30.59 0.18 -2.68 16 15 C -0.13 -4.54 5.50 30.59 0.17 -4.37 16 16 C 0.17 6.99 2.29 44.99 0.10 7.09 16 17 H 0.05 2.17 8.08 -2.39 -0.02 2.15 16 18 N -0.73 -37.88 4.95 -322.94 -1.60 -39.48 16 19 C -0.23 -12.78 9.93 84.03 0.83 -11.94 16 20 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 21 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 22 N -0.97 -61.59 13.06 21.65 0.28 -61.31 16 23 Si 0.97 46.90 29.55 68.60 2.03 48.92 16 24 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 27 N -0.28 -9.50 11.67 -48.17 -0.56 -10.07 16 28 N -0.28 -7.03 3.70 -355.92 -1.32 -8.34 16 29 C 0.07 1.00 10.89 127.77 1.39 2.39 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.90 7.35 -2.39 -0.02 0.88 16 33 H 0.10 1.00 7.42 -2.39 -0.02 0.99 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.16 4.74 7.46 -2.91 -0.02 4.71 16 38 H 0.41 16.19 8.33 -92.71 -0.77 15.42 16 39 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.37 21.43 7.80 -92.71 -0.72 20.71 16 48 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 49 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 50 H 0.13 0.80 7.44 -2.39 -0.02 0.78 16 51 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -77.48 410.47 2.30 -75.19 By element: Atomic # 1 Polarization: 48.86 SS G_CDS: -0.57 Total: 48.29 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 6.29 Total: 3.04 kcal Atomic # 7 Polarization: -143.41 SS G_CDS: -5.38 Total: -148.79 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.07 Total: -26.65 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -77.48 2.30 -75.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085194604.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.094 kcal (2) G-P(sol) polarization free energy of solvation -77.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds