Wall clock time and date at job start Tue Mar 31 2020 20:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47458 * 2 1 4 4 C 1.50702 * 109.46912 * 119.99868 * 2 1 3 5 5 N 1.30493 * 125.65222 * 300.04043 * 4 2 1 6 6 C 1.34126 * 109.25759 * 179.97438 * 5 4 2 7 7 C 1.34676 * 108.02386 * 359.73448 * 6 5 4 8 8 N 1.35048 * 125.64660 * 119.99474 * 4 2 1 9 9 C 1.46495 * 126.40018 * 0.04227 * 8 4 2 10 10 C 1.50699 * 109.47481 * 84.99450 * 9 8 4 11 11 O 1.21284 * 119.99842 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00339 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00148 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47121 * 35.00307 * 13 12 10 15 15 C 1.53007 * 109.46993 * 275.00177 * 13 12 10 16 16 C 1.53002 * 109.46614 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47624 * 59.99880 * 16 15 13 18 18 C 1.52996 * 109.47183 * 300.00076 * 17 16 15 19 19 C 1.53003 * 109.47284 * 59.99869 * 18 17 16 20 20 H 1.08993 * 109.46899 * 60.00059 * 19 18 17 21 21 N 1.46499 * 109.47139 * 180.02562 * 19 18 17 22 22 C 1.36932 * 119.99549 * 274.99850 * 21 19 18 23 23 H 1.08003 * 120.00354 * 0.02562 * 22 21 19 24 24 C 1.38817 * 120.00011 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00154 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99635 * 0.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99668 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99848 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99841 * 26 24 22 30 30 H 1.08996 * 109.46938 * 59.99485 * 1 2 3 31 31 H 1.08990 * 109.47591 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46709 * 300.00205 * 1 2 3 33 33 H 1.09001 * 109.46709 * 239.99795 * 2 1 3 34 34 H 1.09004 * 109.47459 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47466 * 300.00191 * 3 2 1 36 36 H 1.09001 * 109.47328 * 60.00174 * 3 2 1 37 37 H 1.08003 * 125.99307 * 180.02562 * 6 5 4 38 38 H 1.07987 * 126.59617 * 180.28369 * 7 6 5 39 39 H 1.09000 * 109.47135 * 324.99654 * 9 8 4 40 40 H 1.08998 * 109.47358 * 204.99865 * 9 8 4 41 41 H 0.97008 * 119.99734 * 0.02562 * 12 10 9 42 42 H 1.08999 * 109.47150 * 60.00307 * 15 13 12 43 43 H 1.09001 * 109.47293 * 300.00024 * 15 13 12 44 44 H 1.08999 * 109.47386 * 299.99437 * 16 15 13 45 45 H 1.09002 * 109.46447 * 180.02562 * 16 15 13 46 46 H 1.08995 * 109.47291 * 179.97438 * 17 16 15 47 47 H 1.09001 * 109.46895 * 59.99879 * 17 16 15 48 48 H 1.09001 * 109.47044 * 299.99712 * 18 17 16 49 49 H 1.09000 * 109.47161 * 180.02562 * 18 17 16 50 50 H 0.96993 * 120.00302 * 94.99814 * 21 19 18 51 51 H 0.96998 * 119.99442 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7853 -0.3624 2.4637 6 6 2.3924 -1.2216 3.2958 7 6 3.0354 -2.1402 2.5499 8 7 2.8119 -1.8131 1.2396 9 6 3.3189 -2.5289 0.0663 10 6 4.5913 -1.8763 -0.4093 11 8 5.0315 -0.9087 0.1746 12 7 5.2406 -2.3684 -1.4829 13 6 6.4778 -1.7342 -1.9449 14 1 7.0398 -1.3661 -1.0866 15 6 6.1365 -0.5648 -2.8707 16 6 7.4287 0.0971 -3.3537 17 6 8.2725 -0.9270 -4.1153 18 6 8.6137 -2.0963 -3.1896 19 6 7.3215 -2.7583 -2.7067 20 1 6.7592 -3.1263 -3.5647 21 7 7.6482 -3.8777 -1.8198 22 6 7.9276 -5.1100 -2.3473 23 1 7.9075 -5.2568 -3.4171 24 6 8.2377 -6.1706 -1.5070 25 7 8.5067 -7.3551 -2.0140 26 14 8.2731 -5.9167 0.3433 27 1 9.6390 -5.5103 0.7611 28 1 7.9037 -7.1837 1.0240 29 1 7.3049 -4.8541 0.7158 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0275 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9562 0.8900 37 1 2.3660 -1.1860 4.3749 38 1 3.6173 -2.9734 2.9151 39 1 2.5745 -2.4961 -0.7292 40 1 3.5204 -3.5665 0.3327 41 1 4.8887 -3.1425 -1.9497 42 1 5.5350 0.1646 -2.3282 43 1 5.5744 -0.9329 -3.7290 44 1 7.9911 0.4652 -2.4956 45 1 7.1855 0.9304 -4.0128 46 1 9.1928 -0.4553 -4.4597 47 1 7.7101 -1.2950 -4.9734 48 1 9.1761 -1.7283 -2.3315 49 1 9.2152 -2.8257 -3.7321 50 1 7.6666 -3.7458 -0.8590 51 1 8.7237 -8.0960 -1.4268 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085350566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:48 Heat of formation + Delta-G solvation = 18.696695 kcal Electronic energy + Delta-G solvation = -30236.333756 eV Core-core repulsion = 26364.242528 eV Total energy + Delta-G solvation = -3872.091228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.22081 -39.94667 -38.07657 -35.47375 -34.29376 -34.03555 -34.00868 -31.47256 -29.89977 -28.91400 -28.53967 -27.27873 -27.21342 -23.59892 -23.03092 -22.52530 -21.32874 -21.10486 -20.51999 -19.88594 -19.10793 -17.99727 -17.35227 -17.21664 -16.02825 -15.58483 -15.21430 -14.87067 -14.83019 -14.43444 -14.33916 -13.99166 -13.66757 -13.65592 -13.59233 -13.39562 -13.25098 -12.97749 -12.80594 -12.65103 -12.39351 -12.26781 -12.22250 -11.63459 -11.48234 -11.32630 -11.14919 -11.10514 -11.04293 -10.96087 -10.71895 -10.48584 -10.28594 -10.23092 -9.96082 -9.89502 -9.71868 -9.42905 -9.06069 -8.90358 -8.33079 -7.41961 -5.90253 -3.26751 1.95571 2.50863 2.55892 3.17825 3.25457 3.28747 3.30938 3.36401 4.24724 4.46485 4.46834 4.52483 4.61464 4.79352 4.80661 4.93605 4.95877 4.99292 5.12503 5.14635 5.30821 5.36925 5.44843 5.46569 5.50274 5.56858 5.59044 5.64542 5.72317 5.73464 5.75095 5.80521 5.81927 5.94829 6.07152 6.10717 6.18138 6.24203 6.27898 6.29925 6.32057 6.35304 6.60353 6.71029 6.76755 6.85972 7.10363 7.53391 7.84456 8.11783 8.17728 8.28486 9.06034 9.78801 9.98043 11.27673 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010863 B = 0.003937 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.861266 B = 7111.029475 C = 8964.277054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.006 4.006 3 C -0.138 4.138 4 C 0.226 3.774 5 N -0.488 5.488 6 C -0.030 4.030 7 C -0.049 4.049 8 N -0.439 5.439 9 C 0.080 3.920 10 C 0.495 3.505 11 O -0.527 6.527 12 N -0.705 5.705 13 C 0.139 3.861 14 H 0.083 0.917 15 C -0.122 4.122 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.133 4.133 19 C 0.179 3.821 20 H 0.061 0.939 21 N -0.747 5.747 22 C -0.246 4.246 23 H 0.091 0.909 24 C 0.010 3.990 25 N -0.930 5.930 26 Si 0.882 3.118 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.280 1.280 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.168 0.832 38 H 0.172 0.828 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.406 0.594 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.056 0.944 49 H 0.071 0.929 50 H 0.361 0.639 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.030 13.848 -0.050 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.037 4.037 5 N -0.206 5.206 6 C -0.177 4.177 7 C -0.181 4.181 8 N -0.121 5.121 9 C -0.047 4.047 10 C 0.279 3.721 11 O -0.403 6.403 12 N -0.356 5.356 13 C 0.034 3.966 14 H 0.101 0.899 15 C -0.162 4.162 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.174 4.174 19 C 0.069 3.931 20 H 0.079 0.921 21 N -0.389 5.389 22 C -0.376 4.376 23 H 0.109 0.891 24 C -0.187 4.187 25 N -0.578 5.578 26 Si 0.712 3.288 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.185 0.815 38 H 0.189 0.811 39 H 0.137 0.863 40 H 0.143 0.857 41 H 0.241 0.759 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.090 0.910 50 H 0.194 0.806 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.088 14.891 0.378 19.829 hybrid contribution 0.755 -1.344 1.028 1.853 sum -12.333 13.547 1.407 18.374 Atomic orbital electron populations 1.21788 0.93173 1.02042 1.02706 1.19507 0.96314 0.96082 0.90770 1.21748 1.01727 0.93881 1.02268 1.23105 0.96571 0.88400 0.95615 1.70143 1.24615 1.26943 0.98928 1.22183 1.01707 0.94384 0.99426 1.22673 1.07917 1.04942 0.82610 1.44824 1.38269 1.23076 1.05900 1.21724 0.96086 0.97970 0.88924 1.20571 0.85813 0.84781 0.80955 1.90761 1.67068 1.26580 1.55847 1.45908 1.26027 1.33431 1.30231 1.21397 0.84462 0.93183 0.97573 0.89875 1.21853 0.98022 0.97242 0.99034 1.21480 0.95956 0.97848 0.99970 1.21575 0.99302 0.96355 0.98540 1.22184 0.99517 0.96746 0.98970 1.20444 0.93005 0.86803 0.92891 0.92146 1.42788 1.84989 1.07160 1.03971 1.19032 1.39910 0.84619 0.94045 0.89087 1.24643 1.01412 0.95495 0.97124 1.69691 1.53365 1.00682 1.34034 0.86618 0.78060 0.76718 0.87396 1.21049 1.21729 1.20627 0.91899 0.92831 0.91322 0.90645 0.92170 0.92123 0.91527 0.81476 0.81121 0.86251 0.85734 0.75878 0.91909 0.91735 0.92029 0.92155 0.92427 0.92121 0.92565 0.90994 0.80602 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.18 37.16 0.34 -0.90 16 2 C -0.01 -0.07 3.25 -91.78 -0.30 -0.37 16 3 C -0.14 -1.50 9.17 37.15 0.34 -1.16 16 4 C 0.23 3.06 6.40 -155.42 -0.99 2.07 16 5 N -0.49 -7.34 11.25 -10.81 -0.12 -7.46 16 6 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 7 C -0.05 -0.65 11.58 -16.56 -0.19 -0.84 16 8 N -0.44 -5.74 2.24 -115.19 -0.26 -6.00 16 9 C 0.08 0.87 6.17 -5.20 -0.03 0.83 16 10 C 0.50 6.91 7.86 -10.99 -0.09 6.83 16 11 O -0.53 -9.38 16.08 5.55 0.09 -9.29 16 12 N -0.71 -9.41 4.91 -53.80 -0.26 -9.68 16 13 C 0.14 2.03 1.98 -67.93 -0.13 1.90 16 14 H 0.08 1.43 7.58 -51.93 -0.39 1.03 16 15 C -0.12 -1.50 5.50 -26.73 -0.15 -1.65 16 16 C -0.11 -1.32 5.92 -26.73 -0.16 -1.48 16 17 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 18 C -0.13 -2.10 5.50 -26.73 -0.15 -2.24 16 19 C 0.18 2.98 2.29 -67.93 -0.16 2.83 16 20 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 21 N -0.75 -15.85 4.76 -53.42 -0.25 -16.10 16 22 C -0.25 -6.34 10.41 -15.06 -0.16 -6.49 16 23 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 24 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 25 N -0.93 -27.77 13.97 55.49 0.78 -27.00 16 26 Si 0.88 21.27 27.73 -169.99 -4.71 16.55 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.72 6.85 -51.93 -0.36 0.37 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.17 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.12 0.92 7.28 -51.93 -0.38 0.54 16 40 H 0.12 1.17 8.13 -51.93 -0.42 0.75 16 41 H 0.41 4.86 8.60 -40.82 -0.35 4.51 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 50 H 0.36 7.95 5.66 -40.82 -0.23 7.72 16 51 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 408.83 15.07 6.16 6.16 Total: -1.00 -33.37 408.83 -9.78 -43.15 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -8.91 Total: 12.42 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.29 Total: -2.75 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -0.12 Total: -66.24 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.71 Total: 16.55 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.37 -9.78 -43.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085350566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.851 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds