Wall clock time and date at job start Tue Mar 31 2020 18:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34261 * 125.75465 * 2 1 4 4 C 1.38036 * 107.41953 * 180.02562 * 3 2 1 5 5 C 1.47430 * 126.41888 * 180.02562 * 4 3 2 6 6 O 1.21597 * 120.00296 * 174.16520 * 5 4 3 7 7 N 1.34776 * 119.99684 * 354.16955 * 5 4 3 8 8 C 1.46500 * 120.00109 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47267 * 179.97438 * 8 7 5 10 10 H 1.08998 * 112.85678 * 316.19891 * 9 8 7 11 11 C 1.53784 * 113.61114 * 87.50343 * 9 8 7 12 12 C 1.53789 * 87.08343 * 139.98108 * 11 9 8 13 13 H 1.08997 * 113.69036 * 220.01354 * 12 11 9 14 14 N 1.46499 * 113.61441 * 89.11623 * 12 11 9 15 15 C 1.36933 * 120.00232 * 107.50231 * 14 12 11 16 16 H 1.08000 * 119.99622 * 0.02562 * 15 14 12 17 17 C 1.38804 * 120.00191 * 180.02562 * 15 14 12 18 18 N 1.31626 * 120.00159 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00219 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47322 * 59.99344 * 19 17 15 21 21 H 1.48497 * 109.47336 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46832 * 299.99808 * 19 17 15 23 23 C 1.53783 * 87.07777 * 334.56724 * 12 11 9 24 24 C 1.41292 * 107.17083 * 0.02562 * 4 3 2 25 25 C 1.50703 * 125.98980 * 180.02562 * 24 4 3 26 26 C 1.52998 * 109.46891 * 182.14950 * 25 24 4 27 27 C 1.52998 * 109.46938 * 302.14870 * 25 24 4 28 28 C 1.52997 * 109.47383 * 62.14928 * 25 24 4 29 29 N 1.30452 * 108.02156 * 359.97438 * 24 4 3 30 30 H 1.09007 * 109.46941 * 269.98178 * 1 2 3 31 31 H 1.09002 * 109.47084 * 29.98002 * 1 2 3 32 32 H 1.08994 * 109.47529 * 149.98176 * 1 2 3 33 33 H 1.08005 * 126.28777 * 0.04298 * 3 2 1 34 34 H 0.97006 * 119.99983 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47204 * 299.99904 * 8 7 5 36 36 H 1.09007 * 109.46789 * 59.99672 * 8 7 5 37 37 H 1.09000 * 113.61852 * 254.53078 * 11 9 8 38 38 H 1.09000 * 113.61433 * 25.43760 * 11 9 8 39 39 H 0.97003 * 119.99488 * 287.50386 * 14 12 11 40 40 H 0.96994 * 119.99820 * 179.97438 * 18 17 15 41 41 H 1.08998 * 113.61462 * 270.88316 * 23 12 11 42 42 H 1.09000 * 113.61077 * 139.97874 * 23 12 11 43 43 H 1.09004 * 109.47320 * 59.99746 * 26 25 24 44 44 H 1.09005 * 109.47224 * 179.97438 * 26 25 24 45 45 H 1.09001 * 109.47130 * 299.99635 * 26 25 24 46 46 H 1.09000 * 109.47582 * 65.15268 * 27 25 24 47 47 H 1.09001 * 109.47325 * 185.15261 * 27 25 24 48 48 H 1.08998 * 109.47368 * 305.14960 * 27 25 24 49 49 H 1.09008 * 109.47018 * 54.99902 * 28 25 24 50 50 H 1.08994 * 109.47291 * 175.00399 * 28 25 24 51 51 H 1.09000 * 109.46769 * 295.00459 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5598 0.6553 -0.0006 5 6 4.7638 1.5061 -0.0003 6 8 5.8649 1.0014 0.1062 7 7 4.6440 2.8434 -0.1179 8 6 5.8403 3.6890 -0.1170 9 6 5.4286 5.1552 -0.2632 10 1 4.6589 5.3054 -1.0203 11 6 5.1207 5.8450 1.0763 12 6 5.8399 7.0828 0.5144 13 1 6.4654 7.5952 1.2452 14 7 4.9555 7.9941 -0.2162 15 6 4.6035 9.1964 0.3365 16 1 4.9781 9.4730 1.3110 17 6 3.7652 10.0595 -0.3555 18 7 3.3090 9.7226 -1.5433 19 14 3.2854 11.7000 0.3983 20 1 4.5070 12.5074 0.6454 21 1 2.3901 12.4304 -0.5343 22 1 2.5783 11.4664 1.6832 23 6 6.6195 6.1192 -0.3959 24 6 3.5311 -0.7573 -0.0016 25 6 4.7322 -1.6675 -0.0019 26 6 4.2680 -3.1243 -0.0571 27 6 5.6025 -1.3629 -1.2228 28 6 5.5454 -1.4393 1.2738 29 7 2.2826 -1.1356 -0.0010 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5141 33 1 1.9165 2.1170 0.0007 34 1 3.7655 3.2460 -0.2031 35 1 6.3797 3.5544 0.8206 36 1 6.4844 3.4079 -0.9503 37 1 4.0564 6.0010 1.2527 38 1 5.6300 5.3931 1.9274 39 1 4.6194 7.7457 -1.0916 40 1 2.7229 10.3257 -2.0266 41 1 7.5385 5.7421 0.0528 42 1 6.7651 6.4964 -1.4081 43 1 3.6886 -3.2869 -0.9660 44 1 5.1368 -3.7827 -0.0578 45 1 3.6480 -3.3413 0.8127 46 1 6.0077 -0.3546 -1.1378 47 1 6.4214 -2.0805 -1.2735 48 1 4.9985 -1.4366 -2.1271 49 1 4.9013 -1.5699 2.1435 50 1 6.3637 -2.1580 1.3164 51 1 5.9504 -0.4273 1.2703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086506790.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:41 Heat of formation + Delta-G solvation = 66.318764 kcal Electronic energy + Delta-G solvation = -28983.720539 eV Core-core repulsion = 25113.694359 eV Total energy + Delta-G solvation = -3870.026180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.75604 -39.43210 -38.40875 -36.92555 -34.54406 -33.26899 -32.90624 -30.93066 -30.01967 -27.66184 -27.31749 -27.13019 -26.59652 -25.06438 -23.85216 -22.90406 -21.91548 -21.63058 -20.25917 -18.78144 -18.34073 -17.79627 -17.22967 -16.16073 -15.96147 -15.72294 -15.24063 -15.02417 -14.88352 -14.44271 -14.28423 -14.14432 -14.03493 -13.76568 -13.41723 -13.20934 -12.89883 -12.85159 -12.71149 -12.30508 -12.13115 -12.12245 -11.93126 -11.53430 -11.46815 -11.17115 -11.15027 -11.05922 -10.95967 -10.85126 -10.59223 -10.46012 -10.23051 -9.98485 -9.71477 -9.61615 -9.57740 -9.41425 -8.97918 -8.91061 -8.70469 -7.03134 -5.83960 -3.12900 1.30496 2.04078 2.09208 3.31927 3.39726 3.42241 3.44506 3.45191 4.05041 4.33546 4.52882 4.54281 4.74669 4.83038 4.95411 5.01314 5.01494 5.06253 5.09692 5.18819 5.26640 5.30800 5.42833 5.47050 5.62706 5.64675 5.70531 5.72277 5.83441 5.87060 5.90167 5.96590 5.98929 6.06286 6.10415 6.12066 6.21240 6.32905 6.36608 6.37463 6.54094 6.55297 6.58024 6.71778 6.76297 6.91289 7.02883 7.37977 7.63168 7.65611 8.35445 8.38450 9.46008 10.03755 10.37939 11.38416 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016908 B = 0.002286 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.666620 B =12243.369399 C =13436.196874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.364 5.364 3 C 0.099 3.901 4 C -0.285 4.285 5 C 0.589 3.411 6 O -0.533 6.533 7 N -0.722 5.722 8 C 0.134 3.866 9 C -0.120 4.120 10 H 0.092 0.908 11 C -0.168 4.168 12 C 0.167 3.833 13 H 0.062 0.938 14 N -0.706 5.706 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.013 4.013 18 N -0.934 5.934 19 Si 0.909 3.091 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.148 4.148 24 C 0.146 3.854 25 C 0.020 3.980 26 C -0.136 4.136 27 C -0.154 4.154 28 C -0.153 4.153 29 N -0.300 5.300 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.183 0.817 34 H 0.397 0.603 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.098 0.902 47 H 0.056 0.944 48 H 0.043 0.957 49 H 0.042 0.958 50 H 0.055 0.945 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 -23.111 2.571 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.141 5.141 3 C -0.052 4.052 4 C -0.300 4.300 5 C 0.378 3.622 6 O -0.413 6.413 7 N -0.372 5.372 8 C 0.010 3.990 9 C -0.138 4.138 10 H 0.110 0.890 11 C -0.209 4.209 12 C 0.054 3.946 13 H 0.080 0.920 14 N -0.344 5.344 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.582 5.582 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.187 4.187 24 C -0.022 4.022 25 C 0.018 3.982 26 C -0.194 4.194 27 C -0.211 4.211 28 C -0.211 4.211 29 N -0.120 5.120 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.200 0.800 34 H 0.231 0.769 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.116 0.884 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.074 0.926 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.418 -24.248 2.724 24.520 hybrid contribution -0.797 1.733 0.007 1.907 sum -3.215 -22.515 2.731 22.907 Atomic orbital electron populations 1.21993 0.73549 1.04995 1.03886 1.48318 1.07078 1.03870 1.54840 1.23148 0.90564 0.93875 0.97656 1.20248 0.92583 0.93973 1.23219 1.17227 0.87720 0.81393 0.75887 1.90513 1.27376 1.72798 1.50614 1.45919 1.10623 1.06030 1.74631 1.21458 0.86660 0.89084 1.01752 1.22706 0.99921 0.91286 0.99928 0.89008 1.23882 1.01893 1.00110 0.94995 1.21064 0.91366 0.88828 0.93307 0.92010 1.42161 1.54991 1.17121 1.20156 1.19247 1.23463 0.93678 1.00919 0.91052 1.24758 1.00434 0.98942 0.96756 1.69650 1.37926 1.37410 1.13169 0.86248 0.78059 0.83750 0.78009 1.21178 1.21695 1.21238 1.23440 0.96436 0.97299 1.01561 1.22403 0.92850 0.92206 0.94741 1.18965 0.89309 0.91941 0.97989 1.21826 1.00848 0.94598 1.02109 1.22165 0.98667 1.05309 0.94967 1.22170 0.98921 1.05597 0.94390 1.77191 1.01295 1.07000 1.26479 0.90250 0.88930 0.88944 0.79971 0.76873 0.91502 0.91759 0.91637 0.91373 0.78131 0.93403 0.90424 0.91367 0.92663 0.92401 0.92581 0.88402 0.92508 0.93823 0.93886 0.92586 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.44 59.85 0.68 1.18 16 2 N -0.36 -3.48 3.98 -67.60 -0.27 -3.75 16 3 C 0.10 0.93 10.99 -16.56 -0.18 0.75 16 4 C -0.29 -3.42 5.95 -105.07 -0.63 -4.05 16 5 C 0.59 7.64 7.54 -12.52 -0.09 7.55 16 6 O -0.53 -7.90 10.00 5.28 0.05 -7.85 16 7 N -0.72 -8.42 5.54 -61.38 -0.34 -8.76 16 8 C 0.13 1.69 5.51 -4.05 -0.02 1.66 16 9 C -0.12 -1.69 3.63 -89.81 -0.33 -2.02 16 10 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 11 C -0.17 -2.66 7.43 -25.91 -0.19 -2.85 16 12 C 0.17 3.14 4.56 -67.11 -0.31 2.84 16 13 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 14 N -0.71 -16.92 5.31 -52.64 -0.28 -17.20 16 15 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 19 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.15 -2.28 7.39 -25.92 -0.19 -2.47 16 24 C 0.15 1.84 5.64 -82.02 -0.46 1.37 16 25 C 0.02 0.23 0.75 -155.66 -0.12 0.12 16 26 C -0.14 -1.38 7.96 37.16 0.30 -1.09 16 27 C -0.15 -1.79 8.21 37.16 0.30 -1.48 16 28 C -0.15 -1.79 8.27 37.16 0.31 -1.48 16 29 N -0.30 -3.67 11.80 33.90 0.40 -3.27 16 30 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.18 1.09 7.49 -52.48 -0.39 0.70 16 34 H 0.40 3.95 7.43 -40.82 -0.30 3.64 16 35 H 0.07 0.87 7.84 -51.93 -0.41 0.47 16 36 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 39 H 0.38 9.75 7.90 -40.82 -0.32 9.42 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 1.32 4.59 -51.93 -0.24 1.09 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.04 0.50 8.14 -51.92 -0.42 0.07 16 50 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.10 1.37 4.69 -51.93 -0.24 1.12 16 LS Contribution 405.46 15.07 6.11 6.11 Total: -1.00 -32.35 405.46 -8.42 -40.77 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -8.62 Total: 10.85 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.17 Total: -7.09 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.24 Total: -59.57 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.05 Total: -7.85 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.35 -8.42 -40.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086506790.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.088 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds