Wall clock time and date at job start Tue Mar 31 2020 18:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34261 * 125.75465 * 2 1 4 4 C 1.38036 * 107.41953 * 180.02562 * 3 2 1 5 5 C 1.47430 * 126.41888 * 180.02562 * 4 3 2 6 6 O 1.21597 * 120.00296 * 174.16520 * 5 4 3 7 7 N 1.34776 * 119.99684 * 354.16955 * 5 4 3 8 8 C 1.46500 * 120.00109 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47267 * 179.97438 * 8 7 5 10 10 H 1.08998 * 112.85678 * 316.19891 * 9 8 7 11 11 C 1.53784 * 113.61114 * 87.50343 * 9 8 7 12 12 C 1.53789 * 87.08343 * 139.98108 * 11 9 8 13 13 H 1.08997 * 113.69036 * 220.01354 * 12 11 9 14 14 N 1.46499 * 113.61441 * 89.11623 * 12 11 9 15 15 C 1.36933 * 120.00232 * 107.50231 * 14 12 11 16 16 H 1.08000 * 119.99622 * 0.02562 * 15 14 12 17 17 C 1.38804 * 120.00191 * 180.02562 * 15 14 12 18 18 N 1.31626 * 120.00159 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00219 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47322 * 59.99344 * 19 17 15 21 21 H 1.48497 * 109.47336 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46832 * 299.99808 * 19 17 15 23 23 C 1.53783 * 87.07777 * 334.56724 * 12 11 9 24 24 C 1.41292 * 107.17083 * 0.02562 * 4 3 2 25 25 C 1.50703 * 125.98980 * 180.02562 * 24 4 3 26 26 C 1.52998 * 109.46891 * 182.14950 * 25 24 4 27 27 C 1.52998 * 109.46938 * 302.14870 * 25 24 4 28 28 C 1.52997 * 109.47383 * 62.14928 * 25 24 4 29 29 N 1.30452 * 108.02156 * 359.97438 * 24 4 3 30 30 H 1.09007 * 109.46941 * 269.98178 * 1 2 3 31 31 H 1.09002 * 109.47084 * 29.98002 * 1 2 3 32 32 H 1.08994 * 109.47529 * 149.98176 * 1 2 3 33 33 H 1.08005 * 126.28777 * 0.04298 * 3 2 1 34 34 H 0.97006 * 119.99983 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47204 * 299.99904 * 8 7 5 36 36 H 1.09007 * 109.46789 * 59.99672 * 8 7 5 37 37 H 1.09000 * 113.61852 * 254.53078 * 11 9 8 38 38 H 1.09000 * 113.61433 * 25.43760 * 11 9 8 39 39 H 0.97003 * 119.99488 * 287.50386 * 14 12 11 40 40 H 0.96994 * 119.99820 * 179.97438 * 18 17 15 41 41 H 1.08998 * 113.61462 * 270.88316 * 23 12 11 42 42 H 1.09000 * 113.61077 * 139.97874 * 23 12 11 43 43 H 1.09004 * 109.47320 * 59.99746 * 26 25 24 44 44 H 1.09005 * 109.47224 * 179.97438 * 26 25 24 45 45 H 1.09001 * 109.47130 * 299.99635 * 26 25 24 46 46 H 1.09000 * 109.47582 * 65.15268 * 27 25 24 47 47 H 1.09001 * 109.47325 * 185.15261 * 27 25 24 48 48 H 1.08998 * 109.47368 * 305.14960 * 27 25 24 49 49 H 1.09008 * 109.47018 * 54.99902 * 28 25 24 50 50 H 1.08994 * 109.47291 * 175.00399 * 28 25 24 51 51 H 1.09000 * 109.46769 * 295.00459 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5598 0.6553 -0.0006 5 6 4.7638 1.5061 -0.0003 6 8 5.8649 1.0014 0.1062 7 7 4.6440 2.8434 -0.1179 8 6 5.8403 3.6890 -0.1170 9 6 5.4286 5.1552 -0.2632 10 1 4.6589 5.3054 -1.0203 11 6 5.1207 5.8450 1.0763 12 6 5.8399 7.0828 0.5144 13 1 6.4654 7.5952 1.2452 14 7 4.9555 7.9941 -0.2162 15 6 4.6035 9.1964 0.3365 16 1 4.9781 9.4730 1.3110 17 6 3.7652 10.0595 -0.3555 18 7 3.3090 9.7226 -1.5433 19 14 3.2854 11.7000 0.3983 20 1 4.5070 12.5074 0.6454 21 1 2.3901 12.4304 -0.5343 22 1 2.5783 11.4664 1.6832 23 6 6.6195 6.1192 -0.3959 24 6 3.5311 -0.7573 -0.0016 25 6 4.7322 -1.6675 -0.0019 26 6 4.2680 -3.1243 -0.0571 27 6 5.6025 -1.3629 -1.2228 28 6 5.5454 -1.4393 1.2738 29 7 2.2826 -1.1356 -0.0010 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5141 33 1 1.9165 2.1170 0.0007 34 1 3.7655 3.2460 -0.2031 35 1 6.3797 3.5544 0.8206 36 1 6.4844 3.4079 -0.9503 37 1 4.0564 6.0010 1.2527 38 1 5.6300 5.3931 1.9274 39 1 4.6194 7.7457 -1.0916 40 1 2.7229 10.3257 -2.0266 41 1 7.5385 5.7421 0.0528 42 1 6.7651 6.4964 -1.4081 43 1 3.6886 -3.2869 -0.9660 44 1 5.1368 -3.7827 -0.0578 45 1 3.6480 -3.3413 0.8127 46 1 6.0077 -0.3546 -1.1378 47 1 6.4214 -2.0805 -1.2735 48 1 4.9985 -1.4366 -2.1271 49 1 4.9013 -1.5699 2.1435 50 1 6.3637 -2.1580 1.3164 51 1 5.9504 -0.4273 1.2703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086506790.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:40 Heat of formation + Delta-G solvation = 45.965517 kcal Electronic energy + Delta-G solvation = -28984.603122 eV Core-core repulsion = 25113.694359 eV Total energy + Delta-G solvation = -3870.908763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.55531 -40.53505 -39.61934 -37.79071 -35.85435 -34.87314 -33.63178 -32.20284 -31.44721 -28.72346 -28.10270 -28.04205 -27.46624 -26.38318 -25.67421 -23.96893 -22.86038 -22.66104 -21.18031 -19.90561 -19.46928 -19.23766 -18.57476 -17.06157 -16.82285 -16.69841 -16.53511 -16.18016 -15.83806 -15.70766 -15.64368 -15.11742 -15.00460 -14.94070 -14.63027 -14.54931 -13.86973 -13.70499 -13.52416 -13.38210 -13.22534 -12.99427 -12.92520 -12.88922 -12.88329 -12.61819 -12.32136 -12.20854 -12.15705 -12.03342 -11.96881 -11.82787 -11.55582 -11.43354 -11.30008 -10.89333 -10.80732 -10.50461 -10.36940 -9.93088 -9.54740 -8.96993 -7.93455 -5.21203 0.54470 1.14839 1.46576 1.49342 1.51450 1.57482 2.36735 2.49914 2.57410 3.31922 3.39223 3.64650 3.77236 3.85893 3.88957 3.95445 4.09762 4.14306 4.20557 4.28204 4.36995 4.38972 4.41453 4.47074 4.49789 4.66786 4.69534 4.81006 4.83746 4.84575 4.90905 4.96633 4.98651 5.04941 5.05612 5.12111 5.15732 5.19018 5.20586 5.34786 5.40328 5.49434 5.53493 5.57395 5.59724 5.70800 5.84954 5.91234 6.30472 6.55023 6.73962 7.35552 7.44151 8.13400 8.35658 9.29559 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016908 B = 0.002286 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.666620 B =12243.369399 C =13436.196874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.361 5.361 3 C 0.113 3.887 4 C -0.313 4.313 5 C 0.588 3.412 6 O -0.555 6.555 7 N -0.716 5.716 8 C 0.145 3.855 9 C -0.101 4.101 10 H 0.082 0.918 11 C -0.151 4.151 12 C 0.142 3.858 13 H 0.057 0.943 14 N -0.719 5.719 15 C -0.241 4.241 16 H 0.075 0.925 17 C -0.075 4.075 18 N -0.969 5.969 19 Si 0.971 3.029 20 H -0.280 1.280 21 H -0.297 1.297 22 H -0.278 1.278 23 C -0.135 4.135 24 C 0.131 3.869 25 C 0.016 3.984 26 C -0.129 4.129 27 C -0.147 4.147 28 C -0.146 4.146 29 N -0.324 5.324 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.217 0.783 34 H 0.406 0.594 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.090 0.910 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.105 0.895 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.039 0.961 49 H 0.038 0.962 50 H 0.067 0.933 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -23.717 3.454 24.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.138 5.138 3 C -0.040 4.040 4 C -0.328 4.328 5 C 0.377 3.623 6 O -0.437 6.437 7 N -0.367 5.367 8 C 0.021 3.979 9 C -0.120 4.120 10 H 0.100 0.900 11 C -0.192 4.192 12 C 0.032 3.968 13 H 0.076 0.924 14 N -0.357 5.357 15 C -0.373 4.373 16 H 0.093 0.907 17 C -0.267 4.267 18 N -0.619 5.619 19 Si 0.800 3.200 20 H -0.206 1.206 21 H -0.223 1.223 22 H -0.204 1.204 23 C -0.175 4.175 24 C -0.037 4.037 25 C 0.013 3.987 26 C -0.186 4.186 27 C -0.205 4.205 28 C -0.204 4.204 29 N -0.145 5.145 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.234 0.766 34 H 0.242 0.758 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.207 0.793 40 H 0.060 0.940 41 H 0.123 0.877 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.058 0.942 49 H 0.057 0.943 50 H 0.086 0.914 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.845 -24.890 3.646 25.316 hybrid contribution -0.666 1.879 -0.225 2.006 sum -3.511 -23.011 3.421 23.528 Atomic orbital electron populations 1.22378 0.71075 1.06550 1.05243 1.48694 1.08440 1.03251 1.53436 1.23627 0.89698 0.95191 0.95484 1.20277 0.93293 0.93809 1.25463 1.17386 0.87818 0.81594 0.75462 1.90511 1.28302 1.73228 1.51663 1.45800 1.10800 1.05660 1.74449 1.21255 0.86950 0.87878 1.01780 1.22480 0.98895 0.92095 0.98488 0.90016 1.23693 1.00657 0.98326 0.96512 1.21399 0.91792 0.89378 0.94197 0.92446 1.42285 1.55975 1.17339 1.20145 1.19623 1.22327 0.94559 1.00813 0.90675 1.25515 1.01366 1.02346 0.97451 1.69798 1.39129 1.38428 1.14561 0.85252 0.77631 0.79913 0.77209 1.20603 1.22310 1.20402 1.23349 0.97639 0.96194 1.00278 1.22579 0.93216 0.92755 0.95119 1.19015 0.89274 0.92703 0.97667 1.21752 1.01254 0.93980 1.01621 1.22073 0.98918 1.04549 0.94921 1.22075 0.99143 1.04800 0.94388 1.77121 1.01503 1.08562 1.27268 0.88944 0.86236 0.88618 0.76606 0.75815 0.91351 0.91870 0.93235 0.89143 0.79321 0.94049 0.87711 0.92526 0.93106 0.90936 0.93024 0.90167 0.91338 0.94226 0.94281 0.91401 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 11.44 127.77 1.46 2.13 16 2 N -0.36 -6.24 3.98 -367.78 -1.46 -7.71 16 3 C 0.11 1.89 10.99 84.27 0.93 2.82 16 4 C -0.31 -7.23 5.95 -20.15 -0.12 -7.35 16 5 C 0.59 14.77 7.54 86.66 0.65 15.42 16 6 O -0.56 -16.33 10.00 -4.02 -0.04 -16.37 16 7 N -0.72 -15.61 5.54 -466.38 -2.59 -18.20 16 8 C 0.14 3.39 5.51 86.38 0.48 3.87 16 9 C -0.10 -2.69 3.63 -10.27 -0.04 -2.73 16 10 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 11 C -0.15 -4.54 7.43 31.12 0.23 -4.31 16 12 C 0.14 5.24 4.56 45.52 0.21 5.44 16 13 H 0.06 2.14 8.10 -2.39 -0.02 2.12 16 14 N -0.72 -34.56 5.31 -320.45 -1.70 -36.26 16 15 C -0.24 -12.98 9.97 84.03 0.84 -12.14 16 16 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 17 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 18 N -0.97 -57.48 13.06 21.65 0.28 -57.20 16 19 Si 0.97 44.92 29.55 68.60 2.03 46.94 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 C -0.14 -3.96 7.39 31.12 0.23 -3.73 16 24 C 0.13 3.23 5.64 43.52 0.25 3.47 16 25 C 0.02 0.36 0.75 -52.93 -0.04 0.32 16 26 C -0.13 -2.52 7.96 71.98 0.57 -1.95 16 27 C -0.15 -3.39 8.21 71.98 0.59 -2.80 16 28 C -0.15 -3.38 8.27 71.98 0.60 -2.78 16 29 N -0.32 -7.65 11.80 -46.67 -0.55 -8.20 16 30 H 0.09 0.51 8.14 -2.38 -0.02 0.50 16 31 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.22 1.89 7.49 -2.91 -0.02 1.87 16 34 H 0.41 7.28 7.43 -92.70 -0.69 6.59 16 35 H 0.07 1.63 7.84 -2.39 -0.02 1.61 16 36 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 2.34 7.90 -2.39 -0.02 2.32 16 39 H 0.37 19.26 7.90 -92.71 -0.73 18.52 16 40 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 41 H 0.10 2.53 8.10 -2.39 -0.02 2.51 16 42 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.08 2.19 4.59 -2.39 -0.01 2.18 16 47 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 50 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.08 2.26 4.69 -2.39 -0.01 2.25 16 Total: -1.00 -70.51 405.46 2.78 -67.73 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.49 Total: 37.28 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 7.30 Total: -8.01 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -6.02 Total: -127.57 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.04 Total: -16.37 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -70.51 2.78 -67.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086506790.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.698 kcal (2) G-P(sol) polarization free energy of solvation -70.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds