Wall clock time and date at job start Tue Mar 31 2020 19:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47117 * 2 1 4 4 C 1.50700 * 109.47009 * 120.00078 * 2 1 3 5 5 C 1.35368 * 126.38592 * 325.32065 * 4 2 1 6 6 C 1.41496 * 105.50257 * 180.13851 * 5 4 2 7 7 C 1.47709 * 126.51984 * 179.84420 * 6 5 4 8 8 O 1.21574 * 119.99695 * 359.71717 * 7 6 5 9 9 N 1.34776 * 120.00250 * 179.71892 * 7 6 5 10 10 C 1.46499 * 120.00109 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47206 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.53709 * 303.84069 * 11 10 9 13 13 C 1.54269 * 110.48834 * 66.45235 * 11 10 9 14 14 C 1.53871 * 106.59595 * 142.28983 * 13 11 10 15 15 C 1.54265 * 106.60168 * 359.97438 * 14 13 11 16 16 H 1.09009 * 110.48157 * 95.20443 * 15 14 13 17 17 N 1.46499 * 110.48892 * 217.71152 * 15 14 13 18 18 C 1.36935 * 119.99938 * 273.54846 * 17 15 14 19 19 H 1.08000 * 120.00518 * 359.72965 * 18 17 15 20 20 C 1.38817 * 119.99990 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46676 * 90.00727 * 22 20 18 24 24 H 1.48502 * 109.46977 * 210.00025 * 22 20 18 25 25 H 1.48494 * 109.47494 * 330.00753 * 22 20 18 26 26 C 1.54884 * 104.19587 * 336.39542 * 15 14 13 27 27 N 1.31809 * 106.96492 * 359.58599 * 6 5 4 28 28 N 1.28472 * 110.07237 * 0.25607 * 27 6 5 29 29 C 1.46497 * 124.88701 * 179.97438 * 28 27 6 30 30 H 1.08999 * 109.46883 * 59.99508 * 1 2 3 31 31 H 1.08996 * 109.47449 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47179 * 300.00238 * 1 2 3 33 33 H 1.09004 * 109.46437 * 239.99716 * 2 1 3 34 34 H 1.08998 * 109.46987 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46944 * 299.99770 * 3 2 1 36 36 H 1.08994 * 109.47314 * 59.99810 * 3 2 1 37 37 H 1.08003 * 127.24806 * 359.97438 * 5 4 2 38 38 H 0.96995 * 119.99823 * 0.02562 * 9 7 6 39 39 H 1.09004 * 109.47176 * 59.99947 * 10 9 7 40 40 H 1.08995 * 109.47188 * 299.99986 * 10 9 7 41 41 H 1.09007 * 110.02833 * 23.00662 * 13 11 10 42 42 H 1.08996 * 110.07247 * 261.60028 * 13 11 10 43 43 H 1.09007 * 110.03164 * 240.71738 * 14 13 11 44 44 H 1.09000 * 110.07324 * 119.31254 * 14 13 11 45 45 H 0.96999 * 119.99984 * 93.54781 * 17 15 14 46 46 H 0.96996 * 119.99743 * 179.97438 * 21 20 18 47 47 H 1.09006 * 110.75837 * 156.25869 * 26 15 14 48 48 H 1.09000 * 110.75472 * 279.62236 * 26 15 14 49 49 H 1.08995 * 109.47248 * 89.97566 * 29 28 27 50 50 H 1.09000 * 109.47595 * 209.98444 * 29 28 27 51 51 H 1.09010 * 109.46949 * 329.97674 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.4551 -0.7014 2.4549 6 6 2.2886 -1.5013 3.2719 7 6 2.0888 -1.8013 4.7043 8 8 1.1323 -1.3382 5.2946 9 7 2.9670 -2.5883 5.3569 10 6 2.7691 -2.8854 6.7777 11 6 3.8976 -3.7931 7.2710 12 1 3.9507 -4.6995 6.6678 13 6 5.2459 -3.0441 7.2397 14 6 6.0285 -3.4955 8.4852 15 6 5.1283 -4.5026 9.2303 16 1 5.3814 -5.5239 8.9454 17 7 5.2554 -4.3295 10.6795 18 6 6.2509 -4.9765 11.3616 19 1 6.9398 -5.6179 10.8320 20 6 6.3717 -4.8121 12.7347 21 7 5.5289 -4.0347 13.3810 22 14 7.7294 -5.6953 13.6653 23 1 8.9405 -4.8369 13.7064 24 1 7.2763 -5.9786 15.0509 25 1 8.0506 -6.9721 12.9786 26 6 3.6944 -4.1467 8.7654 27 7 3.2741 -1.9326 2.5102 28 7 3.1389 -1.4797 1.3156 29 6 4.0538 -1.7573 0.2057 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 0.5504 -0.1890 2.7473 38 1 3.7304 -2.9575 4.8860 39 1 1.8122 -3.3893 6.9138 40 1 2.7746 -1.9561 7.3474 41 1 5.0760 -1.9679 7.2751 42 1 5.7980 -3.3051 6.3368 43 1 6.2385 -2.6384 9.1252 44 1 6.9605 -3.9761 8.1876 45 1 4.6343 -3.7566 11.1558 46 1 5.6130 -3.9201 14.3405 47 1 3.0296 -5.0039 8.8725 48 1 3.3114 -3.2882 9.3172 49 1 3.7256 -2.6538 -0.3201 50 1 4.0564 -0.9125 -0.4831 51 1 5.0603 -1.9120 0.5945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086694022.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:04 Heat of formation + Delta-G solvation = 6.159569 kcal Electronic energy + Delta-G solvation = -28072.540431 eV Core-core repulsion = 24199.905553 eV Total energy + Delta-G solvation = -3872.634879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.74844 -40.66935 -39.35882 -36.71290 -36.34327 -35.02025 -34.41790 -32.58463 -30.79090 -30.33959 -29.02323 -28.17136 -28.02293 -25.96334 -24.89594 -23.87441 -23.40812 -21.69688 -21.23569 -20.60197 -20.29574 -19.11645 -18.42965 -17.51232 -17.34794 -17.18421 -16.69669 -16.55025 -15.95044 -15.69379 -15.47513 -15.22797 -15.08543 -14.73420 -14.56362 -14.35872 -14.17803 -13.91898 -13.61697 -13.50833 -13.41596 -13.22692 -13.00500 -12.99816 -12.67378 -12.60312 -12.37876 -12.13452 -12.11129 -11.95664 -11.80663 -11.79232 -11.75359 -11.67054 -11.57609 -11.30249 -11.14798 -10.90742 -10.29995 -9.96213 -9.93727 -8.97971 -7.93181 -5.21362 0.49535 1.09504 1.46797 1.48720 1.54087 1.57132 2.14951 2.34117 2.57219 3.28757 3.38953 3.50793 3.64450 3.75360 3.79180 3.87084 4.09470 4.19526 4.26937 4.36586 4.37024 4.41305 4.46800 4.49406 4.59298 4.61209 4.65324 4.66369 4.72827 4.78562 4.80544 4.83013 4.89814 4.98454 5.01206 5.07407 5.09826 5.15580 5.21942 5.29703 5.34947 5.38170 5.43346 5.44029 5.50179 5.54180 5.66092 5.84226 6.29618 6.42370 6.88801 7.14111 7.34708 8.13426 8.35391 9.30565 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.031275 B = 0.001728 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.064763 B =16195.694580 C =16673.856800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.020 4.020 3 C -0.143 4.143 4 C 0.031 3.969 5 C -0.198 4.198 6 C -0.043 4.043 7 C 0.599 3.401 8 O -0.575 6.575 9 N -0.702 5.702 10 C 0.134 3.866 11 C -0.084 4.084 12 H 0.101 0.899 13 C -0.106 4.106 14 C -0.138 4.138 15 C 0.165 3.835 16 H 0.051 0.949 17 N -0.736 5.736 18 C -0.238 4.238 19 H 0.076 0.924 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.973 3.027 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.268 1.268 26 C -0.113 4.113 27 N -0.270 5.270 28 N -0.274 5.274 29 C 0.070 3.930 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.155 0.845 38 H 0.415 0.585 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.054 0.946 45 H 0.371 0.629 46 H 0.250 0.750 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.103 0.897 50 H 0.123 0.877 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 7.514 -37.853 39.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.040 4.040 3 C -0.201 4.201 4 C -0.094 4.094 5 C -0.226 4.226 6 C -0.201 4.201 7 C 0.384 3.616 8 O -0.454 6.454 9 N -0.353 5.353 10 C 0.010 3.990 11 C -0.103 4.103 12 H 0.119 0.881 13 C -0.144 4.144 14 C -0.178 4.178 15 C 0.056 3.944 16 H 0.069 0.931 17 N -0.375 5.375 18 C -0.370 4.370 19 H 0.094 0.906 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.802 3.198 23 H -0.216 1.216 24 H -0.223 1.223 25 H -0.193 1.193 26 C -0.152 4.152 27 N -0.107 5.107 28 N -0.062 5.062 29 C -0.068 4.068 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.173 0.827 38 H 0.252 0.748 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.203 0.797 46 H 0.059 0.941 47 H 0.090 0.910 48 H 0.077 0.923 49 H 0.122 0.878 50 H 0.141 0.859 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.738 6.993 -37.448 38.525 hybrid contribution 0.130 0.181 1.424 1.441 sum -5.608 7.174 -36.024 37.157 Atomic orbital electron populations 1.21844 0.92857 1.02350 1.03157 1.19840 0.96903 0.95636 0.91632 1.21857 1.01185 0.94030 1.03047 1.21803 0.90063 0.99139 0.98434 1.21582 1.03309 1.05488 0.92244 1.21729 0.97564 1.06184 0.94651 1.17195 0.81926 0.78052 0.84403 1.90767 1.32078 1.54112 1.68405 1.45759 1.28203 1.49943 1.11377 1.21383 0.98810 0.98866 0.79909 1.22038 0.93687 0.98662 0.95950 0.88066 1.22109 0.95052 0.99457 0.97787 1.22740 0.99111 0.99306 0.96642 1.21324 0.93751 0.96515 0.82791 0.93069 1.42649 1.35632 1.56055 1.03212 1.19661 1.06519 1.20269 0.90585 0.90609 1.25577 1.01930 1.01986 0.97679 1.69827 1.40575 1.44021 1.07839 0.85144 0.78615 0.78431 0.77614 1.21577 1.22310 1.19302 1.22604 0.96751 1.01140 0.94713 1.73454 1.23413 1.21256 0.92611 1.45777 1.19604 1.33158 1.07703 1.22646 0.93230 1.05518 0.85430 0.89747 0.92799 0.92819 0.87470 0.92445 0.89657 0.93328 0.82745 0.74797 0.91369 0.92423 0.92420 0.89951 0.94361 0.92717 0.79671 0.94147 0.90957 0.92297 0.87822 0.85898 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.78 71.98 0.63 -0.43 16 2 C -0.02 -0.14 2.89 -11.54 -0.03 -0.17 16 3 C -0.14 -0.87 9.18 71.98 0.66 -0.21 16 4 C 0.03 0.45 5.84 41.40 0.24 0.69 16 5 C -0.20 -4.29 9.95 22.41 0.22 -4.07 16 6 C -0.04 -1.09 7.13 42.45 0.30 -0.79 16 7 C 0.60 17.56 7.82 86.75 0.68 18.24 16 8 O -0.58 -20.88 16.93 -3.95 -0.07 -20.95 16 9 N -0.70 -17.33 5.39 -466.10 -2.51 -19.84 16 10 C 0.13 3.49 4.99 86.38 0.43 3.92 16 11 C -0.08 -2.12 2.93 -9.71 -0.03 -2.15 16 12 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.11 -2.81 6.05 31.32 0.19 -2.62 16 14 C -0.14 -4.86 6.53 31.32 0.20 -4.66 16 15 C 0.16 6.54 3.50 46.06 0.16 6.70 16 16 H 0.05 2.03 8.11 -2.38 -0.02 2.01 16 17 N -0.74 -38.11 5.16 -317.86 -1.64 -39.75 16 18 C -0.24 -13.51 9.97 84.04 0.84 -12.67 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 20 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 21 N -0.97 -61.01 13.06 21.65 0.28 -60.72 16 22 Si 0.97 47.04 29.55 68.60 2.03 49.07 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 26 C -0.11 -3.68 5.92 31.89 0.19 -3.49 16 27 N -0.27 -5.68 11.67 -48.18 -0.56 -6.24 16 28 N -0.27 -3.96 3.70 -355.93 -1.32 -5.28 16 29 C 0.07 0.27 10.89 127.77 1.39 1.66 16 30 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.52 7.35 -2.38 -0.02 0.51 16 33 H 0.11 0.22 7.42 -2.38 -0.02 0.20 16 34 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.15 3.34 7.46 -2.91 -0.02 3.32 16 38 H 0.42 8.61 8.05 -92.71 -0.75 7.87 16 39 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.06 1.69 8.05 -2.39 -0.02 1.68 16 41 H 0.06 1.58 7.77 -2.38 -0.02 1.56 16 42 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.04 1.56 8.04 -2.38 -0.02 1.54 16 44 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.37 20.79 7.73 -92.71 -0.72 20.07 16 46 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 47 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 48 H 0.06 2.07 7.94 -2.39 -0.02 2.05 16 49 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 50 H 0.12 -0.21 7.44 -2.39 -0.02 -0.22 16 51 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 Total: -1.00 -77.48 413.87 2.22 -75.25 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -0.54 Total: 32.72 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 6.55 Total: -4.26 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -5.75 Total: -131.84 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.07 Total: -20.95 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -77.48 2.22 -75.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086694022.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.413 kcal (2) G-P(sol) polarization free energy of solvation -77.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds