Wall clock time and date at job start Tue Mar 31 2020 19:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47219 * 2 1 4 4 C 1.50700 * 109.47253 * 180.02562 * 3 2 1 5 5 C 1.38050 * 126.29021 * 270.20907 * 4 3 2 6 6 C 1.47428 * 126.41689 * 359.97323 * 5 4 3 7 7 O 1.21605 * 119.99882 * 0.31159 * 6 5 4 8 8 N 1.34770 * 120.00115 * 180.31736 * 6 5 4 9 9 C 1.46504 * 120.00175 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47184 * 179.97438 * 9 8 6 11 11 H 1.08993 * 110.43733 * 307.54130 * 10 9 8 12 12 C 1.54888 * 110.48748 * 70.22805 * 10 9 8 13 13 C 1.54885 * 102.74978 * 156.61797 * 12 10 9 14 14 C 1.54263 * 104.20027 * 322.05699 * 13 12 10 15 15 H 1.08996 * 110.07638 * 142.91389 * 14 13 12 16 16 N 1.46496 * 110.03371 * 264.32940 * 14 13 12 17 17 C 1.36943 * 119.99572 * 272.16256 * 16 14 13 18 18 H 1.07998 * 120.00313 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99909 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99959 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00146 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46750 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47470 * 119.99814 * 21 19 17 24 24 H 1.48501 * 109.46991 * 240.00343 * 21 19 17 25 25 C 1.53879 * 106.59446 * 23.60847 * 14 13 12 26 26 C 1.41290 * 107.16754 * 180.26021 * 5 4 3 27 27 N 1.30442 * 108.02550 * 359.74455 * 26 5 4 28 28 N 1.34256 * 126.29228 * 90.02934 * 4 3 2 29 29 C 1.46499 * 125.75340 * 359.97438 * 28 4 3 30 30 H 1.08995 * 109.46859 * 299.99595 * 1 2 3 31 31 H 1.09001 * 109.46858 * 59.99482 * 1 2 3 32 32 H 1.09001 * 109.47010 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46922 * 240.00308 * 2 1 3 34 34 H 1.08997 * 109.47318 * 120.00641 * 2 1 3 35 35 H 1.09009 * 109.46922 * 60.00308 * 3 2 1 36 36 H 1.08997 * 109.47499 * 300.00531 * 3 2 1 37 37 H 0.97001 * 120.00229 * 0.02562 * 8 6 5 38 38 H 1.09004 * 109.47267 * 300.00028 * 9 8 6 39 39 H 1.09000 * 109.47177 * 60.00040 * 9 8 6 40 40 H 1.09005 * 110.75852 * 274.93374 * 12 10 9 41 41 H 1.09003 * 110.75997 * 38.30305 * 12 10 9 42 42 H 1.09002 * 110.48818 * 203.37392 * 13 12 10 43 43 H 1.09003 * 110.59945 * 80.79491 * 13 12 10 44 44 H 0.96994 * 120.00244 * 92.16200 * 16 14 13 45 45 H 0.97000 * 120.00089 * 180.02562 * 20 19 17 46 46 H 1.09001 * 110.03230 * 240.71627 * 25 14 13 47 47 H 1.09002 * 110.03285 * 119.28571 * 25 14 13 48 48 H 1.08002 * 125.98549 * 179.76848 * 26 5 4 49 49 H 1.09002 * 109.47391 * 269.72090 * 29 28 4 50 50 H 1.09001 * 109.46813 * 149.72147 * 29 28 4 51 51 H 1.09004 * 109.47041 * 29.72274 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3646 1.4382 1.1117 6 6 3.9270 1.4334 2.5196 7 8 2.7408 1.4272 2.7875 8 7 4.8414 1.4361 3.5095 9 6 4.4065 1.4319 4.9085 10 6 5.6326 1.4354 5.8237 11 1 6.3132 0.6289 5.5513 12 6 6.3549 2.8039 5.7570 13 6 7.1206 2.8522 7.1025 14 6 6.1507 2.2060 8.1133 15 1 6.7066 1.6081 8.8354 16 7 5.3832 3.2437 8.8062 17 6 5.8813 3.8180 9.9452 18 1 6.8398 3.5057 10.3329 19 6 5.1544 4.8017 10.6016 20 7 3.9861 5.1820 10.1295 21 14 5.8341 5.5856 12.1549 22 1 7.1548 4.9866 12.4745 23 1 5.9910 7.0472 11.9440 24 1 4.8967 5.3458 13.2814 25 6 5.2046 1.3052 7.3001 26 6 5.6993 1.4461 0.6484 27 7 5.6738 1.4490 -0.6558 28 7 4.3413 1.4432 -1.0831 29 6 3.8891 1.4436 -2.4765 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9563 -0.8899 37 1 5.7876 1.4415 3.2958 38 1 3.8039 2.3188 5.1044 39 1 3.8121 0.5388 5.1016 40 1 7.0484 2.8342 4.9166 41 1 5.6337 3.6188 5.6935 42 1 7.3331 3.8837 7.3837 43 1 8.0443 2.2771 7.0390 44 1 4.5223 3.5239 8.4583 45 1 3.4782 5.8696 10.5880 46 1 4.1744 1.6401 7.4212 47 1 5.3019 0.2699 7.6271 48 1 6.5854 1.4489 1.2658 49 1 3.7820 0.4160 -2.8241 50 1 4.6209 1.9622 -3.0958 51 1 2.9278 1.9528 -2.5465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086743692.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:10 Heat of formation + Delta-G solvation = 1.353898 kcal Electronic energy + Delta-G solvation = -28563.673781 eV Core-core repulsion = 24690.830513 eV Total energy + Delta-G solvation = -3872.843268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.52001 -40.37779 -39.27038 -36.45239 -35.99866 -34.87193 -34.20788 -32.48323 -31.65294 -30.32170 -28.99249 -27.98352 -27.43593 -25.71639 -24.88298 -23.41495 -22.69850 -21.51139 -21.21646 -20.71456 -20.33356 -19.12106 -18.53836 -17.27524 -16.84093 -16.75931 -16.57224 -16.32243 -15.87101 -15.80093 -15.64828 -15.42166 -15.09817 -14.66817 -14.50901 -14.34396 -14.16653 -14.00215 -13.59572 -13.54517 -13.40282 -13.10586 -13.06419 -12.96775 -12.47225 -12.44950 -12.31239 -12.19836 -12.09887 -11.97205 -11.86590 -11.65392 -11.58723 -11.55592 -11.45855 -11.36191 -10.89301 -10.80637 -10.39994 -10.07937 -9.55831 -8.94047 -7.91613 -5.18845 0.49109 1.16318 1.40057 1.47106 1.47793 1.57766 2.36068 2.49655 2.58136 3.40461 3.46345 3.52214 3.73172 3.84243 3.88177 3.88830 4.05345 4.09590 4.20662 4.24990 4.33029 4.40725 4.47309 4.52356 4.59764 4.61850 4.64611 4.66172 4.72971 4.80141 4.83859 4.87954 4.91739 4.95133 5.03261 5.12794 5.17652 5.19411 5.26634 5.31851 5.39436 5.42223 5.47022 5.51135 5.55255 5.64105 5.70818 5.87682 6.32228 6.50272 6.71857 7.36499 7.38223 8.17368 8.37890 9.32365 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.002058 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.098624 B =13604.388300 C =14267.266162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C -0.063 4.063 4 C 0.158 3.842 5 C -0.320 4.320 6 C 0.589 3.411 7 O -0.585 6.585 8 N -0.710 5.710 9 C 0.138 3.862 10 C -0.083 4.083 11 H 0.110 0.890 12 C -0.105 4.105 13 C -0.139 4.139 14 C 0.161 3.839 15 H 0.044 0.956 16 N -0.735 5.735 17 C -0.232 4.232 18 H 0.076 0.924 19 C -0.082 4.082 20 N -0.972 5.972 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.296 1.296 24 H -0.295 1.295 25 C -0.117 4.117 26 C 0.087 3.913 27 N -0.322 5.322 28 N -0.360 5.360 29 C 0.083 3.917 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.412 0.588 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.039 0.961 42 H 0.037 0.963 43 H 0.079 0.921 44 H 0.370 0.630 45 H 0.249 0.751 46 H 0.049 0.951 47 H 0.082 0.918 48 H 0.217 0.783 49 H 0.095 0.905 50 H 0.101 0.899 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 -12.786 -29.298 31.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.101 4.101 4 C 0.024 3.976 5 C -0.335 4.335 6 C 0.378 3.622 7 O -0.466 6.466 8 N -0.362 5.362 9 C 0.015 3.985 10 C -0.102 4.102 11 H 0.129 0.871 12 C -0.143 4.143 13 C -0.179 4.179 14 C 0.053 3.947 15 H 0.062 0.938 16 N -0.375 5.375 17 C -0.365 4.365 18 H 0.094 0.906 19 C -0.274 4.274 20 N -0.624 5.624 21 Si 0.800 3.200 22 H -0.189 1.189 23 H -0.223 1.223 24 H -0.223 1.223 25 C -0.156 4.156 26 C -0.100 4.100 27 N -0.141 5.141 28 N -0.138 5.138 29 C -0.056 4.056 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.249 0.751 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.202 0.798 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.233 0.767 49 H 0.113 0.887 50 H 0.120 0.880 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.847 -12.778 -30.192 32.795 hybrid contribution -0.250 1.028 1.877 2.154 sum 0.597 -11.750 -28.315 30.662 Atomic orbital electron populations 1.21727 0.94089 1.02383 1.02305 1.21312 0.97021 0.94242 1.01702 1.20565 0.84876 0.99671 1.05033 1.21775 0.95311 0.94032 0.86508 1.20042 0.94008 1.26473 0.92973 1.17493 0.85144 0.75049 0.84554 1.90725 1.18082 1.52937 1.84880 1.45595 1.10152 1.75134 1.05293 1.21243 0.96630 1.00958 0.79709 1.22102 0.95850 0.98884 0.93339 0.87146 1.22436 0.98571 0.95955 0.97340 1.22953 0.98735 1.00158 0.96073 1.21148 0.92087 0.88887 0.92593 0.93772 1.42784 1.21961 1.44288 1.28431 1.19693 1.01762 1.13967 1.01038 0.90632 1.25554 0.97592 1.01332 1.02916 1.69838 1.14937 1.34768 1.42831 0.85104 0.77766 0.77676 0.79447 1.18900 1.22339 1.22286 1.22379 0.98951 1.00058 0.94178 1.24444 0.97532 0.96057 0.91991 1.77141 0.97090 1.26160 1.13727 1.48665 1.03409 1.54245 1.07494 1.22378 1.02601 1.05388 0.75280 0.93580 0.90889 0.91924 0.90939 0.93765 0.89526 0.87889 0.75097 0.93939 0.91930 0.89381 0.94193 0.94429 0.90294 0.79838 0.94257 0.93201 0.89959 0.76670 0.88657 0.88039 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.20 16 2 C -0.10 -1.60 5.92 30.59 0.18 -1.42 16 3 C -0.06 -1.03 4.89 29.85 0.15 -0.89 16 4 C 0.16 3.08 6.26 42.14 0.26 3.34 16 5 C -0.32 -7.11 6.13 -20.15 -0.12 -7.24 16 6 C 0.59 15.61 7.81 86.67 0.68 16.29 16 7 O -0.58 -19.62 14.85 -4.05 -0.06 -19.68 16 8 N -0.71 -15.59 5.44 -466.37 -2.54 -18.13 16 9 C 0.14 3.60 4.96 86.38 0.43 4.02 16 10 C -0.08 -1.98 2.89 -9.72 -0.03 -2.01 16 11 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 12 C -0.11 -2.86 6.19 31.88 0.20 -2.66 16 13 C -0.14 -4.58 6.54 31.67 0.21 -4.38 16 14 C 0.16 6.19 3.55 45.72 0.16 6.36 16 15 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 16 N -0.73 -37.43 5.08 -319.52 -1.62 -39.05 16 17 C -0.23 -13.06 9.96 84.03 0.84 -12.23 16 18 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.08 -4.82 5.50 84.86 0.47 -4.36 16 20 N -0.97 -61.14 13.06 21.65 0.28 -60.86 16 21 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 22 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 25 C -0.12 -3.62 6.14 31.32 0.19 -3.43 16 26 C 0.09 1.58 11.50 85.65 0.99 2.56 16 27 N -0.32 -6.40 12.50 -56.28 -0.70 -7.11 16 28 N -0.36 -5.95 3.98 -354.30 -1.41 -7.36 16 29 C 0.08 0.57 11.25 127.77 1.44 2.01 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 1.96 6.52 -2.38 -0.02 1.95 16 36 H 0.10 1.03 7.04 -2.39 -0.02 1.01 16 37 H 0.41 6.32 7.39 -92.71 -0.69 5.63 16 38 H 0.04 1.37 8.02 -2.38 -0.02 1.35 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.04 1.32 7.97 -2.39 -0.02 1.30 16 42 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 43 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.37 20.57 7.52 -92.71 -0.70 19.88 16 45 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 46 H 0.05 1.79 7.31 -2.39 -0.02 1.77 16 47 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.22 2.29 7.50 -2.91 -0.02 2.27 16 49 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 50 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.11 0.26 7.01 -2.38 -0.02 0.25 16 Total: -1.00 -77.77 411.41 2.27 -75.50 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.45 Total: 32.78 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 6.74 Total: -5.23 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -5.99 Total: -132.51 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.06 Total: -19.68 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -77.77 2.27 -75.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086743692.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.857 kcal (2) G-P(sol) polarization free energy of solvation -77.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds