Wall clock time and date at job start Tue Mar 31 2020 19:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46631 * 2 1 4 4 C 1.50702 * 109.47013 * 119.99870 * 2 1 3 5 5 C 1.39671 * 126.06713 * 275.00235 * 4 2 1 6 6 C 1.38402 * 105.35645 * 180.02562 * 5 4 2 7 7 C 1.47166 * 126.88591 * 179.97438 * 6 5 4 8 8 O 1.21622 * 120.00405 * 184.97388 * 7 6 5 9 9 N 1.34780 * 119.99725 * 4.96868 * 7 6 5 10 10 C 1.46500 * 120.00159 * 174.98794 * 9 7 6 11 11 C 1.52997 * 109.47349 * 180.27424 * 10 9 7 12 12 H 1.08995 * 110.43715 * 307.54425 * 11 10 9 13 13 C 1.54895 * 110.48376 * 70.22863 * 11 10 9 14 14 C 1.54888 * 102.74719 * 156.62034 * 13 11 10 15 15 C 1.54266 * 104.19640 * 322.05370 * 14 13 11 16 16 H 1.09000 * 110.07039 * 142.91765 * 15 14 13 17 17 N 1.46501 * 110.03428 * 264.32599 * 15 14 13 18 18 C 1.36935 * 119.99856 * 272.16794 * 17 15 14 19 19 H 1.07996 * 120.00512 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99643 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00028 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00063 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47305 * 90.00181 * 22 20 18 24 24 H 1.48504 * 109.47024 * 209.99997 * 22 20 18 25 25 H 1.48501 * 109.47129 * 329.99941 * 22 20 18 26 26 C 1.53881 * 106.59755 * 23.61200 * 15 14 13 27 27 N 1.36601 * 106.23524 * 0.26309 * 6 5 4 28 28 C 1.46497 * 125.19276 * 179.73789 * 27 6 5 29 29 N 1.28446 * 109.61653 * 359.55052 * 27 6 5 30 30 H 1.08997 * 109.47329 * 300.00133 * 1 2 3 31 31 H 1.09000 * 109.46962 * 60.00509 * 1 2 3 32 32 H 1.09008 * 109.46980 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47329 * 239.99866 * 2 1 3 34 34 H 1.09003 * 109.46498 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47392 * 299.99766 * 3 2 1 36 36 H 1.08997 * 109.47373 * 59.99893 * 3 2 1 37 37 H 1.07996 * 127.32235 * 0.02562 * 5 4 2 38 38 H 0.97001 * 120.00019 * 355.26264 * 9 7 6 39 39 H 1.09003 * 109.47278 * 300.28041 * 10 9 7 40 40 H 1.08999 * 109.47087 * 60.27597 * 10 9 7 41 41 H 1.09006 * 110.75047 * 274.93336 * 13 11 10 42 42 H 1.09003 * 110.75483 * 38.30103 * 13 11 10 43 43 H 1.09003 * 110.48485 * 203.37543 * 14 13 11 44 44 H 1.09005 * 110.60138 * 80.79108 * 14 13 11 45 45 H 0.96999 * 119.99587 * 92.16644 * 17 15 14 46 46 H 0.97004 * 120.00127 * 179.97438 * 21 20 18 47 47 H 1.09001 * 110.02965 * 240.71459 * 26 15 14 48 48 H 1.09000 * 110.02649 * 119.28174 * 26 15 14 49 49 H 1.09002 * 109.47401 * 94.57022 * 28 27 6 50 50 H 1.09003 * 109.47022 * 214.57251 * 28 27 6 51 51 H 1.09000 * 109.47278 * 334.56387 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2136 -0.1404 2.4927 6 6 2.6859 -1.1657 3.2934 7 6 3.0359 -1.0823 4.7204 8 8 3.5267 -2.0422 5.2834 9 7 2.8127 0.0580 5.4035 10 6 3.0580 0.1072 6.8470 11 6 2.7216 1.5035 7.3742 12 1 3.2414 2.2652 6.7932 13 6 1.1914 1.7417 7.3399 14 6 0.9931 2.8445 8.4092 15 6 1.9901 2.4722 9.5260 16 1 2.4248 3.3748 9.9556 17 7 1.3105 1.6981 10.5678 18 6 0.6884 2.3425 11.6036 19 1 0.6991 3.4212 11.6529 20 6 0.0441 1.6089 12.5904 21 7 -0.5534 2.2282 13.5863 22 14 0.0263 -0.2571 12.5056 23 1 1.2083 -0.7966 13.2246 24 1 -1.2150 -0.7695 13.1395 25 1 0.0714 -0.6885 11.0854 26 6 3.0890 1.6195 8.8680 27 7 2.7683 -2.2690 2.4923 28 6 3.2288 -3.5917 2.9217 29 7 2.3766 -1.9707 1.3059 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6765 1.9564 0.8899 37 1 2.0253 0.8829 2.7822 38 1 2.4858 0.8449 4.9400 39 1 2.4313 -0.6310 7.3474 40 1 4.1070 -0.1129 7.0449 41 1 0.8775 2.0950 6.3576 42 1 0.6530 0.8349 7.6156 43 1 -0.0285 2.8285 8.7888 44 1 1.2306 3.8254 7.9972 45 1 1.3013 0.7292 10.5237 46 1 -1.0040 1.7156 14.2757 47 1 3.1167 0.6297 9.3237 48 1 4.0569 2.1087 8.9774 49 1 2.3704 -4.2019 3.2026 50 1 3.7647 -4.0731 2.1036 51 1 3.8942 -3.4844 3.7784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086843540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:17 Heat of formation + Delta-G solvation = 10.524539 kcal Electronic energy + Delta-G solvation = -28680.146554 eV Core-core repulsion = 24807.700955 eV Total energy + Delta-G solvation = -3872.445599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.62837 -40.71325 -39.46890 -36.93201 -36.38166 -35.07860 -33.37348 -32.98665 -32.11542 -30.21346 -29.04270 -28.00364 -27.68245 -26.05859 -24.75550 -24.16246 -23.17969 -21.65886 -21.19897 -20.83138 -20.22186 -19.51820 -18.75781 -17.46435 -17.35738 -17.07100 -16.57878 -16.45312 -16.08398 -15.87725 -15.48462 -15.09924 -14.95851 -14.79092 -14.73019 -14.45323 -14.32334 -14.20178 -13.95206 -13.49751 -13.39287 -13.29643 -13.08907 -12.85545 -12.54193 -12.29473 -12.22759 -12.13903 -12.13611 -11.99146 -11.89676 -11.75675 -11.69667 -11.54512 -11.45520 -11.40775 -11.17435 -10.93279 -10.39595 -10.02302 -9.88397 -9.25329 -8.01415 -5.32580 0.16762 1.33843 1.36738 1.38906 1.46030 1.52162 2.07923 2.15745 2.48110 3.29314 3.37834 3.47538 3.59774 3.72486 3.78965 3.91360 4.05992 4.14068 4.23462 4.28994 4.33880 4.42431 4.46283 4.51469 4.55161 4.59665 4.62475 4.68092 4.72694 4.78567 4.83764 4.91121 4.93744 5.05860 5.07483 5.10255 5.14865 5.22887 5.24853 5.27641 5.43636 5.45674 5.47842 5.54063 5.55201 5.62811 5.70556 5.82790 6.24412 6.35915 6.98205 7.06353 7.10981 7.90472 8.06762 9.20499 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.002299 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.741444 B =12176.075881 C =12852.050595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.010 4.010 3 C -0.141 4.141 4 C 0.025 3.975 5 C -0.171 4.171 6 C -0.055 4.055 7 C 0.589 3.411 8 O -0.575 6.575 9 N -0.693 5.693 10 C 0.134 3.866 11 C -0.086 4.086 12 H 0.113 0.887 13 C -0.109 4.109 14 C -0.141 4.141 15 C 0.164 3.836 16 H 0.044 0.956 17 N -0.749 5.749 18 C -0.222 4.222 19 H 0.058 0.942 20 C -0.067 4.067 21 N -0.986 5.986 22 Si 0.951 3.049 23 H -0.280 1.280 24 H -0.299 1.299 25 H -0.255 1.255 26 C -0.118 4.118 27 N -0.269 5.269 28 C 0.079 3.921 29 N -0.300 5.300 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.190 0.810 38 H 0.418 0.582 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.047 0.953 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.362 0.638 46 H 0.256 0.744 47 H 0.059 0.941 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.108 0.892 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.390 -4.241 -32.130 33.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 C -0.198 4.198 4 C -0.131 4.131 5 C -0.200 4.200 6 C -0.183 4.183 7 C 0.375 3.625 8 O -0.456 6.456 9 N -0.345 5.345 10 C 0.010 3.990 11 C -0.104 4.104 12 H 0.131 0.869 13 C -0.146 4.146 14 C -0.181 4.181 15 C 0.056 3.944 16 H 0.062 0.938 17 N -0.393 5.393 18 C -0.353 4.353 19 H 0.076 0.924 20 C -0.258 4.258 21 N -0.637 5.637 22 Si 0.779 3.221 23 H -0.206 1.206 24 H -0.226 1.226 25 H -0.179 1.179 26 C -0.157 4.157 27 N -0.056 5.056 28 C -0.061 4.061 29 N -0.133 5.133 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.207 0.793 38 H 0.256 0.744 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.196 0.804 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.127 0.873 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.829 -5.885 -32.134 33.841 hybrid contribution -0.642 -0.332 1.236 1.432 sum 8.187 -6.217 -30.898 32.563 Atomic orbital electron populations 1.21804 0.93320 1.01511 1.03113 1.19543 0.96050 0.95785 0.91602 1.21823 1.01048 0.93438 1.03521 1.22462 1.03429 0.89674 0.97508 1.22425 1.05019 1.00382 0.92196 1.21468 1.12845 0.90159 0.93819 1.17064 0.77840 0.83355 0.84236 1.90761 1.45992 1.38036 1.70771 1.45523 1.66485 1.13161 1.09297 1.21442 1.01372 0.97579 0.78574 1.22139 0.96698 0.95659 0.95938 0.86928 1.22498 0.94989 0.97977 0.99138 1.22939 0.99419 0.99038 0.96730 1.21128 0.91580 0.93723 0.87932 0.93756 1.42960 1.65410 1.04503 1.26414 1.19066 1.24729 0.92044 0.99494 0.92442 1.25455 1.00940 1.02233 0.97204 1.69877 1.42623 1.36149 1.15058 0.85468 0.76831 0.81402 0.78412 1.20601 1.22598 1.17926 1.22402 0.98809 1.00149 0.94345 1.45772 1.44498 1.10393 1.04953 1.22505 1.02134 0.78388 1.03061 1.73117 1.17767 1.18979 1.03427 0.92086 0.90266 0.94039 0.90212 0.92808 0.90499 0.91199 0.79334 0.74391 0.92786 0.90945 0.89202 0.93452 0.94306 0.90419 0.80440 0.93527 0.92211 0.89494 0.89280 0.87345 0.87578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.18 71.98 0.66 -0.84 16 2 C -0.01 -0.12 3.38 -11.54 -0.04 -0.15 16 3 C -0.14 -1.10 8.79 71.98 0.63 -0.47 16 4 C 0.03 0.45 6.13 43.05 0.26 0.71 16 5 C -0.17 -2.69 9.65 22.66 0.22 -2.47 16 6 C -0.05 -1.12 6.96 40.79 0.28 -0.83 16 7 C 0.59 13.07 7.79 86.59 0.67 13.75 16 8 O -0.58 -16.40 14.59 -4.10 -0.06 -16.46 16 9 N -0.69 -11.65 5.44 -466.63 -2.54 -14.18 16 10 C 0.13 2.62 4.96 86.38 0.43 3.05 16 11 C -0.09 -1.58 2.89 -9.72 -0.03 -1.61 16 12 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 13 C -0.11 -2.39 6.19 31.89 0.20 -2.19 16 14 C -0.14 -4.19 6.54 31.67 0.21 -3.98 16 15 C 0.16 5.67 3.55 45.72 0.16 5.84 16 16 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 17 N -0.75 -33.95 4.88 -319.50 -1.56 -35.51 16 18 C -0.22 -12.53 10.44 84.03 0.88 -11.65 16 19 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 20 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 21 N -0.99 -63.62 13.97 21.65 0.30 -63.32 16 22 Si 0.95 46.15 27.74 68.60 1.90 48.05 16 23 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 25 H -0.25 -11.23 6.52 99.48 0.65 -10.58 16 26 C -0.12 -2.99 6.14 31.32 0.19 -2.80 16 27 N -0.27 -5.78 3.75 -356.02 -1.33 -7.11 16 28 C 0.08 1.33 11.00 127.77 1.41 2.73 16 29 N -0.30 -6.55 11.90 -47.49 -0.57 -7.11 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.07 0.43 7.37 -2.39 -0.02 0.41 16 37 H 0.19 1.59 7.04 -2.91 -0.02 1.57 16 38 H 0.42 4.47 7.47 -92.71 -0.69 3.78 16 39 H 0.05 1.30 8.02 -2.39 -0.02 1.28 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.05 1.25 7.97 -2.39 -0.02 1.23 16 43 H 0.04 1.43 8.04 -2.39 -0.02 1.41 16 44 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.36 16.02 5.38 -92.71 -0.50 15.52 16 46 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 47 H 0.06 1.66 7.31 -2.39 -0.02 1.64 16 48 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.11 2.02 5.98 -2.39 -0.01 2.01 16 Total: -1.00 -76.41 406.95 2.43 -73.98 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -0.32 Total: 26.09 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 6.60 Total: -4.43 kcal Atomic # 7 Polarization: -121.54 SS G_CDS: -5.69 Total: -127.23 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.06 Total: -16.46 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.90 Total: 48.05 kcal Total: -76.41 2.43 -73.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086843540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.505 kcal (2) G-P(sol) polarization free energy of solvation -76.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds