Wall clock time and date at job start Tue Mar 31 2020 20:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47065 * 2 1 4 4 C 1.52998 * 109.47488 * 240.00305 * 2 1 3 5 5 C 1.50703 * 109.47278 * 120.00174 * 2 1 3 6 6 N 1.30452 * 125.98803 * 242.22076 * 5 2 1 7 7 N 1.39929 * 108.89397 * 180.25782 * 6 5 2 8 8 H 0.97001 * 125.74988 * 179.72714 * 7 6 5 9 9 C 1.34258 * 108.49648 * 359.75095 * 7 6 5 10 10 C 1.38042 * 107.41434 * 359.97438 * 9 7 6 11 11 C 1.47431 * 126.41490 * 179.97438 * 10 9 7 12 12 O 1.21606 * 120.00042 * 174.70652 * 11 10 9 13 13 N 1.34770 * 120.00175 * 354.71072 * 11 10 9 14 14 C 1.46496 * 120.00542 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47535 * 180.02562 * 14 13 11 16 16 H 1.09000 * 110.43244 * 307.53991 * 15 14 13 17 17 C 1.54889 * 110.48878 * 70.22293 * 15 14 13 18 18 C 1.54892 * 102.74943 * 156.62194 * 17 15 14 19 19 C 1.54270 * 104.19492 * 322.05933 * 18 17 15 20 20 H 1.09001 * 110.07289 * 142.91485 * 19 18 17 21 21 N 1.46500 * 110.02983 * 264.32391 * 19 18 17 22 22 C 1.36937 * 119.99869 * 272.16422 * 21 19 18 23 23 H 1.07995 * 120.00398 * 0.02562 * 22 21 19 24 24 C 1.38819 * 119.99821 * 180.02562 * 22 21 19 25 25 N 1.31615 * 119.99532 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99919 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.46820 * 89.99787 * 26 24 22 28 28 H 1.48495 * 109.47224 * 210.00021 * 26 24 22 29 29 H 1.48501 * 109.47309 * 330.00497 * 26 24 22 30 30 C 1.53875 * 106.59738 * 23.60899 * 19 18 17 31 31 H 1.08992 * 109.47203 * 308.67060 * 1 2 3 32 32 H 1.09000 * 109.46820 * 68.66972 * 1 2 3 33 33 H 1.09000 * 109.47137 * 188.66299 * 1 2 3 34 34 H 1.08999 * 109.46826 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47065 * 300.00146 * 3 2 1 36 36 H 1.08996 * 109.46630 * 60.00197 * 3 2 1 37 37 H 1.09003 * 109.46637 * 291.54967 * 4 2 1 38 38 H 1.08999 * 109.47515 * 51.54399 * 4 2 1 39 39 H 1.08994 * 109.47340 * 171.55088 * 4 2 1 40 40 H 1.08000 * 126.29543 * 179.97438 * 9 7 6 41 41 H 0.97005 * 119.99723 * 0.02562 * 13 11 10 42 42 H 1.08995 * 109.46970 * 59.99334 * 14 13 11 43 43 H 1.09006 * 109.46796 * 299.99992 * 14 13 11 44 44 H 1.09001 * 110.75439 * 274.93515 * 17 15 14 45 45 H 1.08994 * 110.75491 * 38.31039 * 17 15 14 46 46 H 1.08996 * 110.48647 * 203.38159 * 18 17 15 47 47 H 1.09004 * 110.59570 * 80.78946 * 18 17 15 48 48 H 0.97000 * 119.99864 * 92.16938 * 21 19 18 49 49 H 0.97008 * 119.99126 * 180.02562 * 25 24 22 50 50 H 1.09000 * 110.02819 * 240.71098 * 30 19 18 51 51 H 1.09004 * 110.03137 * 119.28732 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7105 1.2305 6 7 2.7517 -0.1811 2.1813 7 7 3.0218 -1.1602 3.1438 8 1 3.5412 -1.0315 3.9529 9 6 2.4415 -2.3079 2.7583 10 6 1.8038 -2.0657 1.5582 11 6 1.0344 -3.0405 0.7636 12 8 0.4381 -2.6777 -0.2322 13 7 0.9919 -4.3336 1.1408 14 6 0.2269 -5.3022 0.3516 15 6 0.3424 -6.6868 0.9921 16 1 1.3890 -6.9467 1.1503 17 6 -0.4385 -6.7326 2.3290 18 6 -0.7298 -8.2439 2.5031 19 6 -1.0322 -8.7380 1.0733 20 1 -0.6247 -9.7387 0.9293 21 7 -2.4787 -8.7474 0.8411 22 6 -3.2180 -9.8516 1.1715 23 1 -2.7350 -10.7154 1.6037 24 6 -4.5886 -9.8607 0.9510 25 7 -5.2992 -10.9218 1.2691 26 14 -5.4241 -8.3668 0.2029 27 1 -5.4358 -8.4954 -1.2765 28 1 -6.8194 -8.2777 0.7031 29 1 -4.6811 -7.1398 0.5871 30 6 -0.3505 -7.7480 0.1127 31 1 -0.3633 0.6421 0.8023 32 1 -0.3633 0.3738 -0.9573 33 1 -0.3633 -1.0159 0.1548 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.8053 -1.7831 -1.1769 38 1 1.5587 -0.3020 -2.1328 39 1 3.1195 -0.5922 -1.3279 40 1 2.4685 -3.2478 3.2895 41 1 1.4672 -4.6229 1.9354 42 1 0.6223 -5.3368 -0.6635 43 1 -0.8205 -5.0015 0.3235 44 1 0.1765 -6.3608 3.1485 45 1 -1.3669 -6.1665 2.2536 46 1 -1.5946 -8.3937 3.1494 47 1 0.1418 -8.7582 2.9081 48 1 -2.9126 -7.9714 0.4532 49 1 -6.2569 -10.9282 1.1146 50 1 -1.0959 -7.2746 -0.5264 51 1 0.3884 -8.2681 -0.4970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086850291.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:01 Heat of formation + Delta-G solvation = 33.366134 kcal Electronic energy + Delta-G solvation = -29206.816247 eV Core-core repulsion = 25335.361134 eV Total energy + Delta-G solvation = -3871.455113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.90540 -39.49755 -38.22596 -36.93083 -34.92222 -33.34715 -31.42281 -31.25339 -30.63245 -28.99259 -27.63845 -27.23489 -27.20450 -24.69524 -23.12851 -22.85641 -22.65930 -20.52982 -19.99888 -19.33914 -18.76244 -18.45155 -17.52763 -16.63845 -16.16867 -15.69773 -15.23337 -15.19473 -14.98621 -14.66364 -14.36048 -14.30194 -13.95922 -13.90485 -13.38811 -13.10625 -13.01470 -12.72312 -12.42823 -12.28516 -12.10204 -11.89195 -11.62029 -11.43128 -11.38201 -11.31534 -11.12022 -10.94679 -10.79907 -10.67891 -10.57220 -10.47315 -10.37219 -10.33656 -9.97825 -9.85965 -9.71870 -9.57319 -9.22556 -8.95656 -8.89664 -7.24260 -5.76372 -3.11270 1.14566 1.88685 2.31030 3.13566 3.26282 3.39355 3.42795 3.47446 4.05170 4.23707 4.60368 4.63048 4.72295 4.84131 4.88280 4.91942 4.96078 5.04117 5.18387 5.22654 5.41763 5.49248 5.55405 5.58568 5.62648 5.67330 5.71669 5.79516 5.81863 5.85141 5.88486 5.94850 5.96400 5.99470 6.02706 6.08728 6.21501 6.21791 6.26605 6.30536 6.41219 6.51081 6.57773 6.65217 6.70562 6.79532 6.99035 7.17490 7.44823 8.01704 8.20425 8.43469 9.22647 9.95489 10.15318 11.42048 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.002412 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.865103 B =11607.964343 C =12394.982332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.018 3.982 3 C -0.137 4.137 4 C -0.147 4.147 5 C 0.149 3.851 6 N -0.296 5.296 7 N -0.463 5.463 8 H 0.443 0.557 9 C 0.103 3.897 10 C -0.284 4.284 11 C 0.586 3.414 12 O -0.526 6.526 13 N -0.724 5.724 14 C 0.128 3.872 15 C -0.104 4.104 16 H 0.076 0.924 17 C -0.114 4.114 18 C -0.146 4.146 19 C 0.179 3.821 20 H 0.057 0.943 21 N -0.745 5.745 22 C -0.243 4.243 23 H 0.090 0.910 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.883 3.117 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.276 1.276 30 C -0.124 4.124 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.185 0.815 41 H 0.395 0.605 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.052 0.948 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.069 0.931 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.804 21.200 2.596 29.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 C -0.195 4.195 4 C -0.205 4.205 5 C -0.019 4.019 6 N -0.117 5.117 7 N -0.167 5.167 8 H 0.288 0.712 9 C -0.050 4.050 10 C -0.299 4.299 11 C 0.374 3.626 12 O -0.404 6.404 13 N -0.375 5.375 14 C 0.005 3.995 15 C -0.123 4.123 16 H 0.095 0.905 17 C -0.151 4.151 18 C -0.187 4.187 19 C 0.070 3.930 20 H 0.075 0.925 21 N -0.388 5.388 22 C -0.373 4.373 23 H 0.107 0.893 24 C -0.192 4.192 25 N -0.583 5.583 26 Si 0.713 3.287 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.203 1.203 30 C -0.163 4.163 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.202 0.798 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.194 0.806 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.850 22.264 2.363 30.594 hybrid contribution -0.526 0.107 0.356 0.644 sum 20.324 22.371 2.719 30.346 Atomic orbital electron populations 1.22104 0.92464 1.04833 1.01211 1.19002 0.96408 0.93880 0.89165 1.21839 1.01077 0.94749 1.01804 1.22089 0.99467 1.03706 0.95252 1.22480 0.93250 0.91285 0.94895 1.77196 1.21795 1.12444 1.00274 1.46139 1.42286 1.07237 1.21051 0.71209 1.23158 0.93932 0.92260 0.95668 1.20311 1.13703 0.96204 0.99668 1.17229 0.80006 0.81272 0.84077 1.90659 1.45121 1.78191 1.26458 1.45872 1.53160 1.08029 1.30410 1.21508 0.96381 0.87013 0.94611 1.22250 1.00050 0.93359 0.96662 0.90515 1.22518 0.99304 0.98152 0.95174 1.23091 1.00834 0.94159 1.00581 1.20770 0.84709 0.96454 0.91112 0.92494 1.42910 1.02666 1.16946 1.76261 1.19088 0.89977 0.93587 1.34610 0.89261 1.24677 0.96214 0.97029 1.01304 1.69706 1.06412 1.28466 1.53686 0.86571 0.79147 0.83534 0.79409 1.21069 1.21829 1.20257 1.22489 0.99464 0.96182 0.98125 0.93762 0.92212 0.88891 0.92589 0.92254 0.92479 0.89242 0.92157 0.93769 0.79804 0.77129 0.91435 0.91108 0.92855 0.91496 0.90744 0.92929 0.80646 0.93107 0.91212 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.20 37.16 0.30 -1.35 16 2 C 0.02 0.19 0.75 -155.66 -0.12 0.07 16 3 C -0.14 -1.26 7.94 37.16 0.30 -0.97 16 4 C -0.15 -1.57 8.19 37.16 0.30 -1.26 16 5 C 0.15 1.63 5.64 -82.02 -0.46 1.16 16 6 N -0.30 -3.01 11.93 33.90 0.40 -2.61 16 7 N -0.46 -3.02 7.29 30.85 0.22 -2.79 16 8 H 0.44 1.30 8.96 -182.73 -1.64 -0.34 16 9 C 0.10 0.65 11.52 -16.56 -0.19 0.46 16 10 C -0.28 -2.80 5.89 -105.07 -0.62 -3.42 16 11 C 0.59 6.61 7.20 -12.52 -0.09 6.52 16 12 O -0.53 -7.33 10.41 5.27 0.05 -7.28 16 13 N -0.72 -6.75 5.43 -61.39 -0.33 -7.08 16 14 C 0.13 1.42 4.96 -4.05 -0.02 1.40 16 15 C -0.10 -1.16 2.89 -88.96 -0.26 -1.41 16 16 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 17 C -0.11 -1.42 6.19 -24.74 -0.15 -1.58 16 18 C -0.15 -2.29 6.54 -25.07 -0.16 -2.46 16 19 C 0.18 3.21 3.55 -66.81 -0.24 2.97 16 20 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 21 N -0.75 -17.00 4.88 -52.34 -0.26 -17.26 16 22 C -0.24 -6.70 10.44 -15.06 -0.16 -6.86 16 23 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 24 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 25 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 26 Si 0.88 22.11 27.74 -169.99 -4.71 17.40 16 27 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 30 C -0.12 -1.74 6.14 -25.61 -0.16 -1.90 16 31 H 0.04 0.47 8.13 -51.93 -0.42 0.05 16 32 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.09 1.23 4.76 -51.93 -0.25 0.98 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.11 4.60 -51.93 -0.24 0.87 16 38 H 0.06 0.59 8.07 -51.93 -0.42 0.17 16 39 H 0.04 0.44 8.13 -51.93 -0.42 0.01 16 40 H 0.19 0.39 7.49 -52.49 -0.39 0.00 16 41 H 0.40 2.57 7.39 -40.82 -0.30 2.27 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.96 7.96 -51.93 -0.41 0.55 16 46 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.36 8.19 5.38 -40.82 -0.22 7.97 16 49 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 50 H 0.07 1.05 7.31 -51.93 -0.38 0.68 16 51 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 395.80 15.07 5.96 5.96 Total: -1.00 -34.30 395.80 -9.44 -43.73 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -9.74 Total: 6.98 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.82 Total: -8.61 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.82 Total: -58.19 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.05 Total: -7.28 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.30 -9.44 -43.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086850291.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.100 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds