Wall clock time and date at job start Tue Mar 31 2020 20:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47065 * 2 1 4 4 C 1.52998 * 109.47488 * 240.00305 * 2 1 3 5 5 C 1.50703 * 109.47278 * 120.00174 * 2 1 3 6 6 N 1.30452 * 125.98803 * 242.22076 * 5 2 1 7 7 N 1.39929 * 108.89397 * 180.25782 * 6 5 2 8 8 H 0.97001 * 125.74988 * 179.72714 * 7 6 5 9 9 C 1.34258 * 108.49648 * 359.75095 * 7 6 5 10 10 C 1.38042 * 107.41434 * 359.97438 * 9 7 6 11 11 C 1.47431 * 126.41490 * 179.97438 * 10 9 7 12 12 O 1.21606 * 120.00042 * 174.70652 * 11 10 9 13 13 N 1.34770 * 120.00175 * 354.71072 * 11 10 9 14 14 C 1.46496 * 120.00542 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47535 * 180.02562 * 14 13 11 16 16 H 1.09000 * 110.43244 * 307.53991 * 15 14 13 17 17 C 1.54889 * 110.48878 * 70.22293 * 15 14 13 18 18 C 1.54892 * 102.74943 * 156.62194 * 17 15 14 19 19 C 1.54270 * 104.19492 * 322.05933 * 18 17 15 20 20 H 1.09001 * 110.07289 * 142.91485 * 19 18 17 21 21 N 1.46500 * 110.02983 * 264.32391 * 19 18 17 22 22 C 1.36937 * 119.99869 * 272.16422 * 21 19 18 23 23 H 1.07995 * 120.00398 * 0.02562 * 22 21 19 24 24 C 1.38819 * 119.99821 * 180.02562 * 22 21 19 25 25 N 1.31615 * 119.99532 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99919 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.46820 * 89.99787 * 26 24 22 28 28 H 1.48495 * 109.47224 * 210.00021 * 26 24 22 29 29 H 1.48501 * 109.47309 * 330.00497 * 26 24 22 30 30 C 1.53875 * 106.59738 * 23.60899 * 19 18 17 31 31 H 1.08992 * 109.47203 * 308.67060 * 1 2 3 32 32 H 1.09000 * 109.46820 * 68.66972 * 1 2 3 33 33 H 1.09000 * 109.47137 * 188.66299 * 1 2 3 34 34 H 1.08999 * 109.46826 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47065 * 300.00146 * 3 2 1 36 36 H 1.08996 * 109.46630 * 60.00197 * 3 2 1 37 37 H 1.09003 * 109.46637 * 291.54967 * 4 2 1 38 38 H 1.08999 * 109.47515 * 51.54399 * 4 2 1 39 39 H 1.08994 * 109.47340 * 171.55088 * 4 2 1 40 40 H 1.08000 * 126.29543 * 179.97438 * 9 7 6 41 41 H 0.97005 * 119.99723 * 0.02562 * 13 11 10 42 42 H 1.08995 * 109.46970 * 59.99334 * 14 13 11 43 43 H 1.09006 * 109.46796 * 299.99992 * 14 13 11 44 44 H 1.09001 * 110.75439 * 274.93515 * 17 15 14 45 45 H 1.08994 * 110.75491 * 38.31039 * 17 15 14 46 46 H 1.08996 * 110.48647 * 203.38159 * 18 17 15 47 47 H 1.09004 * 110.59570 * 80.78946 * 18 17 15 48 48 H 0.97000 * 119.99864 * 92.16938 * 21 19 18 49 49 H 0.97008 * 119.99126 * 180.02562 * 25 24 22 50 50 H 1.09000 * 110.02819 * 240.71098 * 30 19 18 51 51 H 1.09004 * 110.03137 * 119.28732 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7105 1.2305 6 7 2.7517 -0.1811 2.1813 7 7 3.0218 -1.1602 3.1438 8 1 3.5412 -1.0315 3.9529 9 6 2.4415 -2.3079 2.7583 10 6 1.8038 -2.0657 1.5582 11 6 1.0344 -3.0405 0.7636 12 8 0.4381 -2.6777 -0.2322 13 7 0.9919 -4.3336 1.1408 14 6 0.2269 -5.3022 0.3516 15 6 0.3424 -6.6868 0.9921 16 1 1.3890 -6.9467 1.1503 17 6 -0.4385 -6.7326 2.3290 18 6 -0.7298 -8.2439 2.5031 19 6 -1.0322 -8.7380 1.0733 20 1 -0.6247 -9.7387 0.9293 21 7 -2.4787 -8.7474 0.8411 22 6 -3.2180 -9.8516 1.1715 23 1 -2.7350 -10.7154 1.6037 24 6 -4.5886 -9.8607 0.9510 25 7 -5.2992 -10.9218 1.2691 26 14 -5.4241 -8.3668 0.2029 27 1 -5.4358 -8.4954 -1.2765 28 1 -6.8194 -8.2777 0.7031 29 1 -4.6811 -7.1398 0.5871 30 6 -0.3505 -7.7480 0.1127 31 1 -0.3633 0.6421 0.8023 32 1 -0.3633 0.3738 -0.9573 33 1 -0.3633 -1.0159 0.1548 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.8053 -1.7831 -1.1769 38 1 1.5587 -0.3020 -2.1328 39 1 3.1195 -0.5922 -1.3279 40 1 2.4685 -3.2478 3.2895 41 1 1.4672 -4.6229 1.9354 42 1 0.6223 -5.3368 -0.6635 43 1 -0.8205 -5.0015 0.3235 44 1 0.1765 -6.3608 3.1485 45 1 -1.3669 -6.1665 2.2536 46 1 -1.5946 -8.3937 3.1494 47 1 0.1418 -8.7582 2.9081 48 1 -2.9126 -7.9714 0.4532 49 1 -6.2569 -10.9282 1.1146 50 1 -1.0959 -7.2746 -0.5264 51 1 0.3884 -8.2681 -0.4970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086850291.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:59 Heat of formation + Delta-G solvation = 9.281573 kcal Electronic energy + Delta-G solvation = -29207.860632 eV Core-core repulsion = 25335.361134 eV Total energy + Delta-G solvation = -3872.499498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.53718 -40.36783 -39.35816 -37.70862 -36.19175 -34.86339 -32.97828 -31.98110 -31.65704 -30.04002 -28.97302 -28.06981 -27.98623 -25.83282 -24.68633 -23.78742 -23.44278 -21.42788 -20.93510 -20.72595 -19.60733 -19.36143 -19.13117 -17.36148 -17.17370 -16.57310 -16.47215 -16.15148 -15.97878 -15.78701 -15.69974 -15.09380 -14.96665 -14.76080 -14.73446 -14.32334 -14.24437 -13.92846 -13.73550 -13.31885 -13.07862 -13.01891 -12.87348 -12.52271 -12.35058 -12.29464 -12.21053 -12.09101 -12.02495 -11.90600 -11.86364 -11.73635 -11.63001 -11.48995 -11.37554 -11.34132 -10.92419 -10.58479 -10.50505 -9.98816 -9.65017 -9.24092 -8.00706 -5.31632 0.60453 1.14975 1.38476 1.40186 1.47356 1.83834 2.37200 2.49194 2.51402 3.30381 3.42172 3.64553 3.71054 3.75732 3.83628 4.07470 4.11233 4.13631 4.14552 4.39129 4.49207 4.50173 4.55370 4.61432 4.67486 4.72048 4.81828 4.82644 4.83920 4.89345 4.97643 5.02272 5.03833 5.10974 5.12541 5.14137 5.19955 5.20923 5.26983 5.43750 5.48214 5.49292 5.54974 5.58161 5.64965 5.77504 5.83771 6.25280 6.31156 6.54174 6.78362 7.11919 7.46177 7.91711 8.07921 9.21221 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.002412 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.865103 B =11607.964343 C =12394.982332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.014 3.986 3 C -0.130 4.130 4 C -0.142 4.142 5 C 0.133 3.867 6 N -0.322 5.322 7 N -0.450 5.450 8 H 0.460 0.540 9 C 0.133 3.867 10 C -0.316 4.316 11 C 0.583 3.417 12 O -0.560 6.560 13 N -0.711 5.711 14 C 0.136 3.864 15 C -0.084 4.084 16 H 0.110 0.890 17 C -0.106 4.106 18 C -0.142 4.142 19 C 0.164 3.836 20 H 0.042 0.958 21 N -0.750 5.750 22 C -0.222 4.222 23 H 0.057 0.943 24 C -0.067 4.067 25 N -0.986 5.986 26 Si 0.951 3.049 27 H -0.280 1.280 28 H -0.298 1.298 29 H -0.255 1.255 30 C -0.119 4.119 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.233 0.767 41 H 0.412 0.588 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.092 0.908 45 H 0.045 0.955 46 H 0.037 0.963 47 H 0.077 0.923 48 H 0.362 0.638 49 H 0.256 0.744 50 H 0.057 0.943 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.534 23.038 3.541 33.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.012 3.988 3 C -0.188 4.188 4 C -0.199 4.199 5 C -0.035 4.035 6 N -0.144 5.144 7 N -0.155 5.155 8 H 0.308 0.692 9 C -0.021 4.021 10 C -0.331 4.331 11 C 0.373 3.627 12 O -0.441 6.441 13 N -0.362 5.362 14 C 0.013 3.987 15 C -0.103 4.103 16 H 0.129 0.871 17 C -0.143 4.143 18 C -0.182 4.182 19 C 0.056 3.944 20 H 0.061 0.939 21 N -0.393 5.393 22 C -0.353 4.353 23 H 0.075 0.925 24 C -0.258 4.258 25 N -0.637 5.637 26 Si 0.779 3.221 27 H -0.206 1.206 28 H -0.225 1.225 29 H -0.179 1.179 30 C -0.158 4.158 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.250 0.750 41 H 0.249 0.751 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.110 0.890 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.095 0.905 48 H 0.196 0.804 49 H 0.065 0.935 50 H 0.076 0.924 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 23.673 24.140 3.348 33.976 hybrid contribution -1.251 -0.551 0.147 1.375 sum 22.423 23.589 3.495 32.733 Atomic orbital electron populations 1.22022 0.93262 1.03520 1.01293 1.18994 0.95798 0.94588 0.89468 1.21767 1.00900 0.94058 1.02032 1.22005 0.99659 1.02679 0.95587 1.22531 0.93822 0.92066 0.95123 1.77124 1.22368 1.13899 1.01008 1.46181 1.41681 1.06768 1.20902 0.69198 1.23781 0.90959 0.93351 0.94028 1.20295 1.15714 0.95683 1.01429 1.17474 0.79663 0.81823 0.83777 1.90648 1.46585 1.78830 1.28064 1.45634 1.52771 1.07113 1.30715 1.21262 0.95350 0.87243 0.94893 1.22117 1.01224 0.92180 0.94801 0.87140 1.22474 0.99379 0.95191 0.97299 1.22942 1.00331 0.97005 0.97895 1.21133 0.82093 0.97267 0.93905 0.93932 1.42965 1.04607 1.15486 1.76248 1.19066 0.90219 0.93833 1.32205 0.92472 1.25453 0.97127 1.00153 1.03087 1.69881 1.06495 1.31028 1.56315 0.85470 0.77580 0.80663 0.78428 1.20634 1.22533 1.17932 1.22406 0.99519 0.96173 0.97715 0.93789 0.91946 0.90806 0.92689 0.91330 0.92893 0.90871 0.91951 0.93395 0.75046 0.75108 0.91740 0.93479 0.88992 0.93578 0.94378 0.90469 0.80443 0.93533 0.92413 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.20 71.98 0.59 -2.61 16 2 C 0.01 0.28 0.75 -52.93 -0.04 0.24 16 3 C -0.13 -2.30 7.94 71.98 0.57 -1.73 16 4 C -0.14 -2.97 8.19 71.98 0.59 -2.38 16 5 C 0.13 2.71 5.64 43.52 0.25 2.95 16 6 N -0.32 -5.94 11.93 -46.67 -0.56 -6.49 16 7 N -0.45 -4.30 7.29 -56.32 -0.41 -4.71 16 8 H 0.46 0.94 8.96 -213.43 -1.91 -0.97 16 9 C 0.13 1.11 11.52 84.28 0.97 2.08 16 10 C -0.32 -5.49 5.89 -20.15 -0.12 -5.61 16 11 C 0.58 12.08 7.20 86.67 0.62 12.70 16 12 O -0.56 -15.46 10.41 -4.05 -0.04 -15.50 16 13 N -0.71 -10.86 5.43 -466.39 -2.53 -13.39 16 14 C 0.14 2.68 4.96 86.38 0.43 3.10 16 15 C -0.08 -1.55 2.89 -9.72 -0.03 -1.58 16 16 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 17 C -0.11 -2.27 6.19 31.89 0.20 -2.08 16 18 C -0.14 -4.17 6.54 31.67 0.21 -3.96 16 19 C 0.16 5.70 3.55 45.72 0.16 5.86 16 20 H 0.04 1.59 8.09 -2.39 -0.02 1.57 16 21 N -0.75 -34.19 4.88 -319.50 -1.56 -35.75 16 22 C -0.22 -12.57 10.44 84.04 0.88 -11.69 16 23 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 24 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 25 N -0.99 -63.74 13.97 21.65 0.30 -63.44 16 26 Si 0.95 46.40 27.74 68.60 1.90 48.30 16 27 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 28 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 29 H -0.25 -11.33 6.52 99.48 0.65 -10.68 16 30 C -0.12 -3.07 6.14 31.32 0.19 -2.88 16 31 H 0.04 0.93 8.13 -2.39 -0.02 0.91 16 32 H 0.06 1.29 8.07 -2.39 -0.02 1.27 16 33 H 0.07 1.98 4.76 -2.39 -0.01 1.97 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 1.82 4.60 -2.39 -0.01 1.81 16 38 H 0.06 1.22 8.07 -2.39 -0.02 1.20 16 39 H 0.05 0.92 8.13 -2.39 -0.02 0.91 16 40 H 0.23 -0.53 7.49 -2.91 -0.02 -0.56 16 41 H 0.41 3.23 7.39 -92.70 -0.68 2.55 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.05 1.17 8.02 -2.38 -0.02 1.15 16 44 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.05 1.21 7.96 -2.39 -0.02 1.19 16 46 H 0.04 1.40 8.04 -2.39 -0.02 1.38 16 47 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 48 H 0.36 16.18 5.38 -92.71 -0.50 15.68 16 49 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 50 H 0.06 1.65 7.31 -2.39 -0.02 1.64 16 51 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -79.49 395.80 0.84 -78.65 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -2.20 Total: 23.44 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 5.94 Total: -11.09 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -4.76 Total: -123.79 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.04 Total: -15.50 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.90 Total: 48.30 kcal Total: -79.49 0.84 -78.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086850291.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.928 kcal (2) G-P(sol) polarization free energy of solvation -79.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds