Wall clock time and date at job start Tue Mar 31 2020 19:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47235 * 2 1 4 4 C 1.50700 * 109.46811 * 119.99672 * 2 1 3 5 5 N 1.30449 * 125.99307 * 300.18224 * 4 2 1 6 6 N 1.39932 * 108.90175 * 180.22829 * 5 4 2 7 7 C 1.46496 * 125.75872 * 179.73217 * 6 5 4 8 8 C 1.34264 * 108.48705 * 359.75121 * 6 5 4 9 9 C 1.38039 * 107.41904 * 0.02562 * 8 6 5 10 10 C 1.47432 * 126.41638 * 179.97438 * 9 8 6 11 11 O 1.21603 * 120.00137 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99549 * 0.29251 * 10 9 8 13 13 C 1.46505 * 119.99724 * 179.72679 * 12 10 9 14 14 C 1.52999 * 109.47192 * 180.02562 * 13 12 10 15 15 H 1.08998 * 110.43400 * 307.54826 * 14 13 12 16 16 C 1.54899 * 110.48432 * 70.22356 * 14 13 12 17 17 C 1.54887 * 102.74616 * 156.62317 * 16 14 13 18 18 C 1.54268 * 104.19666 * 322.05655 * 17 16 14 19 19 H 1.08997 * 110.07259 * 142.91775 * 18 17 16 20 20 N 1.46494 * 110.03403 * 264.32820 * 18 17 16 21 21 C 1.36946 * 120.00083 * 272.16371 * 20 18 17 22 22 H 1.07996 * 119.99573 * 0.02562 * 21 20 18 23 23 C 1.38814 * 119.99999 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99525 * 180.02562 * 23 21 20 25 25 Si 1.86792 * 120.00072 * 0.02562 * 23 21 20 26 26 H 1.48507 * 109.47268 * 89.99723 * 25 23 21 27 27 H 1.48498 * 109.47124 * 209.99322 * 25 23 21 28 28 H 1.48502 * 109.47348 * 329.99721 * 25 23 21 29 29 C 1.53877 * 106.59701 * 23.61258 * 18 17 16 30 30 H 1.09007 * 109.47215 * 300.00636 * 1 2 3 31 31 H 1.09003 * 109.46543 * 59.99705 * 1 2 3 32 32 H 1.08994 * 109.47302 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47076 * 239.99626 * 2 1 3 34 34 H 1.09004 * 109.46717 * 59.99945 * 3 2 1 35 35 H 1.08999 * 109.46494 * 179.97438 * 3 2 1 36 36 H 1.08991 * 109.46942 * 299.99574 * 3 2 1 37 37 H 1.08996 * 109.47284 * 270.02548 * 7 6 5 38 38 H 1.09007 * 109.46869 * 30.02682 * 7 6 5 39 39 H 1.09005 * 109.47263 * 150.02487 * 7 6 5 40 40 H 1.08002 * 126.29165 * 179.97438 * 8 6 5 41 41 H 0.97000 * 120.00483 * 359.73112 * 12 10 9 42 42 H 1.09003 * 109.46699 * 299.99993 * 13 12 10 43 43 H 1.08993 * 109.47199 * 60.00006 * 13 12 10 44 44 H 1.08999 * 110.75836 * 274.93174 * 16 14 13 45 45 H 1.08990 * 110.75708 * 38.31100 * 16 14 13 46 46 H 1.09004 * 110.48904 * 203.38289 * 17 16 14 47 47 H 1.09003 * 110.60019 * 80.79015 * 17 16 14 48 48 H 0.97001 * 120.00523 * 92.16296 * 20 18 17 49 49 H 0.97004 * 119.99643 * 180.02562 * 24 23 21 50 50 H 1.09000 * 110.03023 * 240.71382 * 29 18 17 51 51 H 1.09000 * 110.03119 * 119.28865 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7875 -0.3700 2.4658 6 7 2.4325 -1.2708 3.3205 7 6 2.4082 -1.2288 4.7847 8 6 3.0778 -2.1800 2.5724 9 6 2.8484 -1.8636 1.2485 10 6 3.3628 -2.5900 0.0732 11 8 3.0868 -2.2066 -1.0473 12 7 4.1346 -3.6821 0.2408 13 6 4.6409 -4.4075 -0.9271 14 6 5.4826 -5.5978 -0.4627 15 1 6.2466 -5.2714 0.2429 16 6 4.5806 -6.6837 0.1748 17 6 5.4289 -7.9697 0.0148 18 6 6.0961 -7.8134 -1.3673 19 1 7.1102 -8.2118 -1.3404 20 7 5.3094 -8.5127 -2.3863 21 6 5.5407 -9.8385 -2.6394 22 1 6.3029 -10.3686 -2.0876 23 6 4.7950 -10.5013 -3.6046 24 7 5.0170 -11.7756 -3.8475 25 14 3.4764 -9.5845 -4.5585 26 1 4.0728 -8.9916 -5.7825 27 1 2.3961 -10.5286 -4.9418 28 1 2.9119 -8.5045 -3.7098 29 6 6.1302 -6.3052 -1.6709 30 1 -0.3634 0.5140 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 3.2389 -0.6218 5.1446 38 1 1.4672 -0.7925 5.1201 39 1 2.5003 -2.2409 5.1789 40 1 3.6685 -3.0064 2.9390 41 1 4.3548 -3.9880 1.1346 42 1 3.8020 -4.7667 -1.5233 43 1 5.2562 -3.7403 -1.5305 44 1 4.4015 -6.4678 1.2280 45 1 3.6396 -6.7718 -0.3681 46 1 4.7902 -8.8528 0.0323 47 1 6.1843 -8.0308 0.7983 48 1 4.6246 -8.0367 -2.8817 49 1 4.4961 -12.2387 -4.5222 50 1 5.5614 -6.0937 -2.5764 51 1 7.1609 -5.9717 -1.7905 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086874966.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:25 Heat of formation + Delta-G solvation = 31.308985 kcal Electronic energy + Delta-G solvation = -28710.187470 eV Core-core repulsion = 24838.643152 eV Total energy + Delta-G solvation = -3871.544318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.79293 -39.43532 -38.14433 -36.09910 -34.88605 -33.36389 -32.79434 -31.23363 -30.56790 -29.00955 -27.71095 -27.29632 -27.22838 -24.61529 -22.91076 -22.75527 -22.52478 -20.52621 -19.96658 -19.32837 -19.31722 -17.90049 -17.50720 -16.32424 -16.13960 -16.04918 -15.31181 -15.02287 -14.94257 -14.70169 -14.56941 -14.26250 -13.86940 -13.75450 -13.44545 -13.28147 -13.17850 -13.04955 -12.76889 -12.68089 -12.33568 -12.28090 -11.85166 -11.66518 -11.37024 -11.36538 -11.25582 -10.98914 -10.85169 -10.78112 -10.60460 -10.46553 -10.36646 -10.32894 -9.97207 -9.72649 -9.70311 -9.56402 -9.18737 -8.89143 -8.86439 -7.23195 -5.75499 -3.10357 1.17372 1.92149 1.96387 3.17129 3.34520 3.40349 3.44001 3.48292 3.95285 4.17782 4.44194 4.61228 4.61352 4.73033 4.77023 4.86141 4.87806 4.92804 4.98692 5.02410 5.09591 5.27589 5.35894 5.43369 5.48367 5.51043 5.59827 5.67265 5.69209 5.71294 5.73760 5.84258 5.90233 5.99109 6.03908 6.07255 6.07360 6.11034 6.23216 6.30821 6.32144 6.37378 6.48357 6.52974 6.66373 6.80801 7.00310 7.25253 7.49419 8.02645 8.22764 8.44374 9.23581 9.96481 10.16338 11.42934 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.002327 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.459341 B =12030.596963 C =12901.499028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.139 4.139 4 C 0.142 3.858 5 N -0.297 5.297 6 N -0.363 5.363 7 C 0.097 3.903 8 C 0.098 3.902 9 C -0.286 4.286 10 C 0.592 3.408 11 O -0.541 6.541 12 N -0.725 5.725 13 C 0.128 3.872 14 C -0.104 4.104 15 H 0.077 0.923 16 C -0.114 4.114 17 C -0.146 4.146 18 C 0.180 3.820 19 H 0.057 0.943 20 N -0.745 5.745 21 C -0.242 4.242 22 H 0.090 0.910 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.883 3.117 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.276 1.276 29 C -0.124 4.124 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.118 0.882 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.182 0.818 41 H 0.395 0.605 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.052 0.948 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.069 0.931 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.930 25.318 18.450 31.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.053 4.053 3 C -0.196 4.196 4 C -0.025 4.025 5 N -0.117 5.117 6 N -0.140 5.140 7 C -0.044 4.044 8 C -0.054 4.054 9 C -0.301 4.301 10 C 0.379 3.621 11 O -0.419 6.419 12 N -0.376 5.376 13 C 0.005 3.995 14 C -0.123 4.123 15 H 0.095 0.905 16 C -0.152 4.152 17 C -0.186 4.186 18 C 0.070 3.930 19 H 0.075 0.925 20 N -0.388 5.388 21 C -0.372 4.372 22 H 0.107 0.893 23 C -0.192 4.192 24 N -0.583 5.583 25 Si 0.713 3.287 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.202 1.202 29 C -0.163 4.163 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.136 0.864 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.199 0.801 41 H 0.229 0.771 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.194 0.806 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.620 26.169 18.572 32.420 hybrid contribution -0.386 -0.417 -0.485 0.747 sum -5.006 25.752 18.087 31.865 Atomic orbital electron populations 1.21778 0.93887 1.02035 1.02014 1.20005 0.96016 0.95705 0.93527 1.21774 1.01089 0.94757 1.02025 1.22415 0.93866 0.92883 0.93366 1.77166 1.20031 1.14384 1.00168 1.48325 1.37526 1.21060 1.07116 1.21993 1.04765 1.04189 0.73463 1.23071 0.96450 0.94875 0.91001 1.20291 1.13461 1.03840 0.92495 1.17240 0.77622 0.79558 0.87632 1.90711 1.58847 1.67295 1.25061 1.45857 1.52716 1.28872 1.10144 1.21505 0.97893 0.92715 0.87419 1.22251 0.97369 0.94094 0.98586 0.90512 1.22519 0.98580 0.95092 0.98968 1.23090 0.99072 0.97503 0.98983 1.20767 0.94833 0.89434 0.87999 0.92482 1.42915 1.42687 1.09487 1.43707 1.19091 1.16609 0.84791 1.16737 0.89256 1.24673 0.99518 0.95667 0.99370 1.69705 1.43613 1.08636 1.36339 0.86573 0.82443 0.79126 0.80532 1.21067 1.21832 1.20248 1.22489 1.00290 0.96328 0.97163 0.92487 0.91899 0.92663 0.86373 0.92491 0.92746 0.91902 0.90221 0.88862 0.89005 0.80081 0.77121 0.91150 0.91487 0.92848 0.91495 0.90741 0.92924 0.80642 0.93113 0.91210 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.18 37.16 0.34 -1.01 16 2 C -0.03 -0.36 3.26 -91.77 -0.30 -0.65 16 3 C -0.14 -1.29 9.18 37.16 0.34 -0.95 16 4 C 0.14 1.67 5.77 -82.02 -0.47 1.19 16 5 N -0.30 -3.27 12.50 33.90 0.42 -2.85 16 6 N -0.36 -2.91 3.98 -67.60 -0.27 -3.18 16 7 C 0.10 0.33 11.44 59.84 0.68 1.02 16 8 C 0.10 0.75 10.99 -16.56 -0.18 0.57 16 9 C -0.29 -3.17 6.13 -105.07 -0.64 -3.81 16 10 C 0.59 7.55 7.81 -12.52 -0.10 7.45 16 11 O -0.54 -8.73 14.56 5.27 0.08 -8.65 16 12 N -0.73 -7.55 5.44 -61.38 -0.33 -7.89 16 13 C 0.13 1.54 4.96 -4.04 -0.02 1.52 16 14 C -0.10 -1.21 2.89 -88.96 -0.26 -1.47 16 15 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 16 C -0.11 -1.48 6.19 -24.73 -0.15 -1.63 16 17 C -0.15 -2.33 6.54 -25.07 -0.16 -2.50 16 18 C 0.18 3.27 3.55 -66.81 -0.24 3.03 16 19 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 20 N -0.75 -17.21 4.88 -52.34 -0.26 -17.47 16 21 C -0.24 -6.75 10.44 -15.05 -0.16 -6.90 16 22 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 23 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 24 N -0.94 -29.37 13.97 55.49 0.78 -28.60 16 25 Si 0.88 22.30 27.74 -169.99 -4.71 17.58 16 26 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 28 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 29 C -0.12 -1.79 6.14 -25.62 -0.16 -1.95 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.12 1.53 5.60 -51.93 -0.29 1.24 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 39 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.18 0.64 7.46 -52.49 -0.39 0.25 16 41 H 0.40 2.94 7.36 -40.82 -0.30 2.64 16 42 H 0.07 0.99 8.02 -51.93 -0.42 0.57 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.99 7.96 -51.93 -0.41 0.58 16 46 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.36 8.30 5.38 -40.82 -0.22 8.08 16 49 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 50 H 0.07 1.09 7.31 -51.93 -0.38 0.71 16 51 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 409.34 15.07 6.17 6.17 Total: -1.00 -35.64 409.34 -8.46 -44.10 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -8.76 Total: 6.88 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.57 Total: -6.10 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.34 Total: -59.98 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.64 -8.46 -44.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086874966.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.409 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds