Wall clock time and date at job start Tue Mar 31 2020 19:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47450 * 2 1 4 4 C 1.50705 * 109.47362 * 179.97438 * 3 2 1 5 5 N 1.30442 * 125.98485 * 269.68992 * 4 3 2 6 6 N 1.39940 * 108.89603 * 179.90408 * 5 4 3 7 7 H 0.96999 * 125.75903 * 180.14792 * 6 5 4 8 8 C 1.34263 * 108.48876 * 0.36555 * 6 5 4 9 9 C 1.38047 * 107.41643 * 359.79115 * 8 6 5 10 10 C 1.47429 * 126.41408 * 179.97438 * 9 8 6 11 11 O 1.21602 * 120.00136 * 174.02060 * 10 9 8 12 12 N 1.34772 * 119.99831 * 354.00447 * 10 9 8 13 13 C 1.45339 * 120.35403 * 184.92577 * 12 10 9 14 14 C 1.53046 * 108.62973 * 223.25969 * 13 12 10 15 15 C 1.52880 * 109.24611 * 77.97313 * 14 13 12 16 16 C 1.53962 * 109.71631 * 287.12506 * 15 14 13 17 17 C 1.52450 * 110.73326 * 315.64591 * 16 15 14 18 18 C 1.53802 * 109.42098 * 113.72960 * 17 16 15 19 19 H 1.09004 * 109.51923 * 42.03542 * 18 17 16 20 20 N 1.46496 * 109.52198 * 162.22174 * 18 17 16 21 21 C 1.36935 * 120.00017 * 229.15005 * 20 18 17 22 22 H 1.07999 * 120.00300 * 0.88664 * 21 20 18 23 23 C 1.38822 * 119.99933 * 180.88061 * 21 20 18 24 24 N 1.31611 * 119.99634 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99713 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47124 * 90.00076 * 25 23 21 27 27 H 1.48507 * 109.46803 * 210.00009 * 25 23 21 28 28 H 1.48504 * 109.47558 * 330.00137 * 25 23 21 29 29 C 1.46960 * 120.35590 * 5.21226 * 12 10 9 30 30 H 1.09000 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46932 * 300.00210 * 1 2 3 32 32 H 1.09001 * 109.46850 * 60.00233 * 1 2 3 33 33 H 1.08998 * 109.47366 * 240.00089 * 2 1 3 34 34 H 1.09004 * 109.47178 * 120.00174 * 2 1 3 35 35 H 1.09000 * 109.47225 * 59.99969 * 3 2 1 36 36 H 1.08994 * 109.47117 * 300.00386 * 3 2 1 37 37 H 1.07995 * 126.29044 * 179.75972 * 8 6 5 38 38 H 1.09005 * 109.67589 * 343.08212 * 13 12 10 39 39 H 1.09009 * 109.67580 * 103.61963 * 13 12 10 40 40 H 1.09004 * 109.55647 * 318.05094 * 14 13 12 41 41 H 1.08998 * 109.59067 * 197.92395 * 14 13 12 42 42 H 1.09007 * 109.43130 * 167.04659 * 15 14 13 43 43 H 1.08999 * 109.38991 * 47.17442 * 15 14 13 44 44 H 1.08994 * 109.22990 * 195.32242 * 16 15 14 45 45 H 1.08997 * 109.19207 * 75.94505 * 16 15 14 46 46 H 1.08996 * 109.47930 * 353.74443 * 17 16 15 47 47 H 1.09001 * 109.48151 * 233.71478 * 17 16 15 48 48 H 0.97000 * 120.00140 * 49.15470 * 20 18 17 49 49 H 0.97001 * 119.99662 * 179.97438 * 24 23 21 50 50 H 1.09001 * 109.53319 * 188.25957 * 29 12 10 51 51 H 1.09005 * 109.53207 * 308.40903 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.3131 1.4483 1.0564 6 7 5.6509 1.4438 0.6458 7 1 6.4238 1.4445 1.2320 8 6 5.6843 1.4431 -0.6964 9 6 4.3778 1.4423 -1.1422 10 6 3.9327 1.4419 -2.5477 11 8 2.7507 1.3315 -2.8111 12 7 4.8358 1.5642 -3.5406 13 6 4.3982 1.6721 -4.9223 14 6 5.2938 0.7843 -5.7895 15 6 4.8593 -0.6733 -5.6353 16 6 5.2833 -1.1981 -4.2513 17 6 6.7114 -0.7738 -3.9276 18 6 6.6974 0.2068 -2.7428 19 1 5.9914 -0.1424 -1.9893 20 7 8.0384 0.2878 -2.1587 21 6 8.2046 0.1606 -0.8054 22 1 7.3487 -0.0137 -0.1702 23 6 9.4732 0.2557 -0.2499 24 7 10.5162 0.4686 -1.0239 25 14 9.6999 0.0815 1.5961 26 1 9.9297 -1.3461 1.9340 27 1 10.8697 0.8873 2.0293 28 1 8.4805 0.5649 2.2924 29 6 6.2738 1.5836 -3.2383 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 6.5704 1.4436 -1.3138 38 1 3.3629 1.3415 -5.0063 39 1 4.4815 2.7072 -5.2539 40 1 6.3308 0.8901 -5.4709 41 1 5.2024 1.0823 -6.8340 42 1 5.3304 -1.2763 -6.4117 43 1 3.7757 -0.7401 -5.7320 44 1 5.2222 -2.2863 -4.2459 45 1 4.6095 -0.7971 -3.4943 46 1 7.1519 -0.2867 -4.7975 47 1 7.3010 -1.6523 -3.6654 48 1 8.8087 0.4317 -2.7304 49 1 11.4026 0.5354 -0.6357 50 1 6.8325 1.8343 -4.1400 51 1 6.4741 2.3273 -2.4669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088339895.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:42 Heat of formation + Delta-G solvation = 74.149235 kcal Electronic energy + Delta-G solvation = -31899.127329 eV Core-core repulsion = 28029.440704 eV Total energy + Delta-G solvation = -3869.686625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.44379 -39.64177 -37.50941 -35.36268 -34.93547 -33.90357 -32.52443 -31.19655 -30.21732 -29.53593 -27.53407 -26.83303 -26.11031 -24.15502 -23.30324 -21.90163 -21.51762 -21.21037 -20.09206 -19.15338 -18.63818 -17.84678 -16.80421 -16.25153 -15.90763 -15.71419 -14.89757 -14.71685 -14.58780 -14.42458 -14.17860 -13.78682 -13.71286 -13.62400 -13.25077 -12.97325 -12.86429 -12.60583 -12.54744 -12.05050 -11.92725 -11.56600 -11.44632 -11.29259 -11.16070 -11.12000 -11.08039 -10.85222 -10.69374 -10.63840 -10.51117 -10.32490 -10.27597 -10.24654 -9.98913 -9.89533 -9.37341 -9.30554 -9.00012 -8.34493 -8.13812 -7.28521 -6.10671 -3.43132 2.06866 2.53963 3.12077 3.18386 3.23150 3.29308 3.49614 3.85444 4.27068 4.74853 4.91199 5.06134 5.09143 5.12171 5.18932 5.22828 5.28031 5.32083 5.41592 5.47625 5.47931 5.57369 5.68030 5.73432 5.79299 5.84605 5.88129 5.91389 5.96762 5.99658 6.02095 6.04517 6.05391 6.14334 6.16665 6.20335 6.29938 6.42114 6.48274 6.49693 6.53326 6.56652 6.74738 6.81584 6.89028 7.00206 7.31629 7.61431 7.76142 8.03614 8.07421 8.67856 9.18633 9.73466 10.08712 11.10197 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009224 B = 0.005957 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.890880 B = 4699.544030 C = 6951.746171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.037 4.037 4 C 0.132 3.868 5 N -0.318 5.318 6 N -0.457 5.457 7 H 0.445 0.555 8 C 0.107 3.893 9 C -0.322 4.322 10 C 0.601 3.399 11 O -0.555 6.555 12 N -0.602 5.602 13 C 0.115 3.885 14 C -0.149 4.149 15 C -0.112 4.112 16 C -0.119 4.119 17 C -0.131 4.131 18 C 0.138 3.862 19 H 0.078 0.922 20 N -0.722 5.722 21 C -0.273 4.273 22 H 0.074 0.926 23 C 0.003 3.997 24 N -0.915 5.915 25 Si 0.899 3.101 26 H -0.285 1.285 27 H -0.287 1.287 28 H -0.283 1.283 29 C 0.073 3.927 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.246 0.754 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.389 0.611 49 H 0.260 0.740 50 H 0.084 0.916 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.292 1.675 -5.935 12.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.076 4.076 4 C -0.037 4.037 5 N -0.140 5.140 6 N -0.161 5.161 7 H 0.291 0.709 8 C -0.046 4.046 9 C -0.336 4.336 10 C 0.392 3.608 11 O -0.435 6.435 12 N -0.335 5.335 13 C -0.008 4.008 14 C -0.187 4.187 15 C -0.150 4.150 16 C -0.157 4.157 17 C -0.170 4.170 18 C 0.027 3.973 19 H 0.096 0.904 20 N -0.364 5.364 21 C -0.404 4.404 22 H 0.092 0.908 23 C -0.196 4.196 24 N -0.560 5.560 25 Si 0.730 3.270 26 H -0.212 1.212 27 H -0.213 1.213 28 H -0.209 1.209 29 C -0.052 4.052 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.261 0.739 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.224 0.776 49 H 0.070 0.930 50 H 0.102 0.898 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.848 1.616 -4.587 12.807 hybrid contribution 1.269 -0.190 0.276 1.312 sum -10.579 1.426 -4.311 11.512 Atomic orbital electron populations 1.21728 0.95757 1.01314 1.01640 1.21355 0.95447 0.95868 1.02252 1.20081 0.86017 0.98235 1.03310 1.22300 0.96518 0.95787 0.89107 1.77004 0.87037 1.26978 1.22938 1.46410 1.07111 1.56110 1.06437 0.70923 1.26129 1.01466 0.90957 0.86060 1.20184 0.92374 1.26928 0.94152 1.17182 0.84856 0.75027 0.83719 1.90666 1.16597 1.52049 1.84216 1.47568 1.06617 1.73173 1.06112 1.21300 0.99962 0.98675 0.80815 1.22264 1.01472 0.95595 0.99337 1.21700 1.00479 0.95474 0.97342 1.21680 0.97336 0.99621 0.97051 1.22240 0.95958 1.00138 0.98689 1.21239 0.89407 0.92055 0.94564 0.90439 1.42492 1.02080 1.86501 1.05322 1.19326 0.93086 1.44393 0.83549 0.90836 1.24769 0.95565 1.01501 0.97725 1.69636 0.98533 1.53820 1.34038 0.86374 0.77581 0.78171 0.84917 1.21173 1.21264 1.20858 1.23024 0.79882 1.00440 1.01842 0.92993 0.93053 0.92461 0.91367 0.92424 0.91227 0.88680 0.73873 0.89310 0.92604 0.89621 0.91442 0.92564 0.92274 0.93051 0.91747 0.91824 0.91624 0.77628 0.92956 0.89762 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.11 -1.54 5.92 -26.73 -0.16 -1.70 16 3 C -0.04 -0.56 5.20 -27.88 -0.14 -0.70 16 4 C 0.13 2.33 6.52 -82.02 -0.53 1.79 16 5 N -0.32 -5.85 12.63 33.89 0.43 -5.42 16 6 N -0.46 -8.28 6.73 30.85 0.21 -8.08 16 7 H 0.44 7.71 8.70 -182.72 -1.59 6.12 16 8 C 0.11 1.93 6.32 -16.56 -0.10 1.83 16 9 C -0.32 -5.78 5.56 -105.07 -0.58 -6.37 16 10 C 0.60 10.40 6.15 -12.52 -0.08 10.33 16 11 O -0.56 -10.31 14.42 5.28 0.08 -10.23 16 12 N -0.60 -8.96 1.69 -175.87 -0.30 -9.26 16 13 C 0.12 1.46 6.00 -4.64 -0.03 1.43 16 14 C -0.15 -1.66 5.45 -26.77 -0.15 -1.81 16 15 C -0.11 -1.34 5.75 -26.29 -0.15 -1.49 16 16 C -0.12 -1.70 5.40 -26.51 -0.14 -1.84 16 17 C -0.13 -2.03 5.10 -26.59 -0.14 -2.16 16 18 C 0.14 2.37 1.61 -67.86 -0.11 2.26 16 19 H 0.08 1.48 4.53 -51.93 -0.24 1.25 16 20 N -0.72 -14.91 4.66 -53.35 -0.25 -15.16 16 21 C -0.27 -6.27 8.24 -15.06 -0.12 -6.39 16 22 H 0.07 1.64 5.14 -52.49 -0.27 1.37 16 23 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 24 N -0.91 -24.13 13.06 55.49 0.72 -23.41 16 25 Si 0.90 19.69 29.55 -169.99 -5.02 14.66 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 29 C 0.07 1.11 4.43 -4.13 -0.02 1.10 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.48 6.69 -51.93 -0.35 1.13 16 37 H 0.25 4.50 1.37 -52.49 -0.07 4.43 16 38 H 0.09 1.21 6.73 -51.93 -0.35 0.86 16 39 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.09 1.01 3.35 -51.93 -0.17 0.84 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.70 7.85 -51.93 -0.41 0.30 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.05 5.38 -51.93 -0.28 0.77 16 46 H 0.06 0.90 5.47 -51.93 -0.28 0.62 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.39 8.63 8.03 -40.82 -0.33 8.31 16 49 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 50 H 0.08 1.15 6.07 -51.93 -0.32 0.83 16 51 H 0.08 1.29 5.59 -51.93 -0.29 1.00 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -26.53 369.91 -9.47 -36.00 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: -8.73 Total: 20.35 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -2.19 Total: -5.03 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.81 Total: -61.32 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -26.53 -9.47 -36.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088339895.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.146 kcal (2) G-P(sol) polarization free energy of solvation -26.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds