Wall clock time and date at job start Tue Mar 31 2020 19:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47374 * 2 1 4 4 C 1.50699 * 109.47598 * 180.02562 * 3 2 1 5 5 N 1.30449 * 125.99102 * 89.96737 * 4 3 2 6 6 N 1.39930 * 108.89903 * 180.02562 * 5 4 3 7 7 H 0.96998 * 125.75477 * 179.73736 * 6 5 4 8 8 C 1.34263 * 108.49269 * 0.02562 * 6 5 4 9 9 C 1.38043 * 107.41551 * 359.97438 * 8 6 5 10 10 C 1.47429 * 126.41552 * 179.97438 * 9 8 6 11 11 O 1.21606 * 120.00036 * 173.62333 * 10 9 8 12 12 N 1.34772 * 120.00041 * 353.63321 * 10 9 8 13 13 C 1.45331 * 120.36680 * 183.13116 * 12 10 9 14 14 C 1.53445 * 108.41845 * 136.65589 * 13 12 10 15 15 C 1.52881 * 109.38276 * 282.28128 * 14 13 12 16 16 C 1.53951 * 109.73416 * 72.89326 * 15 14 13 17 17 C 1.52454 * 110.72828 * 44.36279 * 16 15 14 18 18 C 1.53796 * 109.40470 * 246.27147 * 17 16 15 19 19 H 1.09004 * 109.52260 * 317.93500 * 18 17 16 20 20 N 1.46496 * 109.52470 * 197.80899 * 18 17 16 21 21 C 1.36938 * 120.00340 * 132.99924 * 20 18 17 22 22 H 1.07998 * 119.99946 * 343.98734 * 21 20 18 23 23 C 1.38814 * 120.00133 * 163.98506 * 21 20 18 24 24 N 1.31618 * 119.99877 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99847 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47269 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46800 * 119.99914 * 25 23 21 28 28 H 1.48496 * 109.46851 * 239.99492 * 25 23 21 29 29 C 1.46971 * 120.36666 * 2.85056 * 12 10 9 30 30 H 1.09002 * 109.47038 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47090 * 300.00007 * 1 2 3 32 32 H 1.08996 * 109.47274 * 59.99869 * 1 2 3 33 33 H 1.08997 * 109.47428 * 239.99455 * 2 1 3 34 34 H 1.09000 * 109.47216 * 119.99650 * 2 1 3 35 35 H 1.08997 * 109.47288 * 59.99369 * 3 2 1 36 36 H 1.09000 * 109.46663 * 299.99988 * 3 2 1 37 37 H 1.08000 * 126.29383 * 179.97438 * 8 6 5 38 38 H 1.09001 * 109.67485 * 256.38382 * 13 12 10 39 39 H 1.08999 * 109.67996 * 16.92220 * 13 12 10 40 40 H 1.09003 * 109.48482 * 42.24793 * 14 13 12 41 41 H 1.08994 * 109.48619 * 162.30273 * 14 13 12 42 42 H 1.09003 * 109.42017 * 192.97346 * 15 14 13 43 43 H 1.09002 * 109.42462 * 312.86522 * 15 14 13 44 44 H 1.08996 * 109.22316 * 164.68452 * 16 15 14 45 45 H 1.08999 * 109.22451 * 284.04886 * 16 15 14 46 46 H 1.08997 * 109.48434 * 6.25776 * 17 16 15 47 47 H 1.09005 * 109.47549 * 126.29798 * 17 16 15 48 48 H 0.97000 * 119.99979 * 313.00100 * 20 18 17 49 49 H 0.97002 * 119.99745 * 180.02562 * 24 23 21 50 50 H 1.09006 * 109.53073 * 51.52400 * 29 12 10 51 51 H 1.08993 * 109.53577 * 171.75639 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3132 1.4421 -1.0564 6 7 5.6508 1.4418 -0.6457 7 1 6.4237 1.4378 -1.2319 8 6 5.6842 1.4414 0.6965 9 6 4.3777 1.4421 1.1423 10 6 3.9326 1.4415 2.5477 11 8 2.7513 1.5592 2.8114 12 7 4.8348 1.3107 3.5403 13 6 4.3989 1.2409 4.9250 14 6 5.1949 0.1337 5.6286 15 6 4.6198 -1.2289 5.2416 16 6 5.0017 -1.5603 3.7875 17 6 6.4676 -1.2328 3.5266 18 6 6.5608 -0.0756 2.5178 19 1 5.8305 -0.2258 1.7227 20 7 7.9080 -0.0339 1.9438 21 6 8.0718 0.0900 0.5899 22 1 7.2418 -0.1007 -0.0742 23 6 9.3048 0.4606 0.0710 24 7 10.3166 0.6926 0.8803 25 14 9.5281 0.6302 -1.7759 26 1 8.2478 0.3174 -2.4601 27 1 9.9348 2.0213 -2.0996 28 1 10.5791 -0.3126 -2.2360 29 6 6.2700 1.2309 3.2340 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 6.5703 1.4407 1.3139 38 1 4.5847 2.1957 5.4168 39 1 3.3346 1.0088 4.9634 40 1 6.2399 0.1872 5.3234 41 1 5.1239 0.2651 6.7083 42 1 5.0222 -1.9939 5.9056 43 1 3.5340 -1.2035 5.3337 44 1 4.8331 -2.6216 3.6052 45 1 4.3776 -0.9768 3.1107 46 1 6.9466 -0.9402 4.4609 47 1 6.9693 -2.1108 3.1199 48 1 8.6839 -0.0940 2.5227 49 1 11.1781 0.9520 0.5177 50 1 6.5518 2.0631 2.5889 51 1 6.8433 1.2756 4.1599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088339896.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:49 Heat of formation + Delta-G solvation = 76.517361 kcal Electronic energy + Delta-G solvation = -32088.053734 eV Core-core repulsion = 28218.469798 eV Total energy + Delta-G solvation = -3869.583936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.45716 -39.58039 -37.50787 -35.35335 -34.90086 -33.87452 -32.55949 -31.15091 -30.21116 -29.49124 -27.53828 -26.81075 -26.11004 -24.13563 -23.30429 -21.87426 -21.47594 -21.19239 -20.06755 -19.11915 -18.63435 -17.80594 -16.77312 -16.21167 -15.86780 -15.68563 -14.91934 -14.72982 -14.55242 -14.41469 -14.16100 -13.77365 -13.73608 -13.63407 -13.20018 -12.94737 -12.85566 -12.60292 -12.54330 -12.02636 -11.89771 -11.54873 -11.44397 -11.29697 -11.17742 -11.13225 -11.07076 -10.83606 -10.69101 -10.63597 -10.46607 -10.32912 -10.30552 -10.24401 -10.11942 -9.95743 -9.30504 -9.19953 -8.88920 -8.29867 -8.06338 -7.23147 -6.15239 -3.49975 2.13423 2.58901 3.12553 3.17206 3.19675 3.28285 3.53424 3.90798 4.22853 4.76493 4.93376 5.07262 5.10238 5.12067 5.18768 5.24377 5.28471 5.33176 5.42955 5.46667 5.50447 5.58335 5.69571 5.75851 5.82825 5.88087 5.89724 5.93906 5.98530 6.00936 6.04569 6.06095 6.07117 6.16292 6.17469 6.21092 6.33096 6.43189 6.48694 6.51426 6.52492 6.59056 6.75242 6.80499 6.94422 7.03548 7.34830 7.66745 7.79837 8.06188 8.10987 8.71372 9.14318 9.71917 10.09955 11.04826 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009534 B = 0.006064 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.212299 B = 4615.981308 C = 6697.542967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.041 4.041 4 C 0.133 3.867 5 N -0.320 5.320 6 N -0.456 5.456 7 H 0.443 0.557 8 C 0.123 3.877 9 C -0.329 4.329 10 C 0.602 3.398 11 O -0.558 6.558 12 N -0.602 5.602 13 C 0.116 3.884 14 C -0.149 4.149 15 C -0.112 4.112 16 C -0.118 4.118 17 C -0.130 4.130 18 C 0.135 3.865 19 H 0.082 0.918 20 N -0.721 5.721 21 C -0.274 4.274 22 H 0.071 0.929 23 C 0.007 3.993 24 N -0.909 5.909 25 Si 0.886 3.114 26 H -0.277 1.277 27 H -0.284 1.284 28 H -0.283 1.283 29 C 0.075 3.925 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.241 0.759 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.385 0.615 49 H 0.260 0.740 50 H 0.078 0.922 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.782 -0.332 6.097 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.080 4.080 4 C -0.036 4.036 5 N -0.142 5.142 6 N -0.160 5.160 7 H 0.290 0.710 8 C -0.030 4.030 9 C -0.343 4.343 10 C 0.393 3.607 11 O -0.438 6.438 12 N -0.335 5.335 13 C -0.007 4.007 14 C -0.187 4.187 15 C -0.150 4.150 16 C -0.156 4.156 17 C -0.169 4.169 18 C 0.025 3.975 19 H 0.099 0.901 20 N -0.363 5.363 21 C -0.405 4.405 22 H 0.089 0.911 23 C -0.193 4.193 24 N -0.553 5.553 25 Si 0.715 3.285 26 H -0.202 1.202 27 H -0.210 1.210 28 H -0.209 1.209 29 C -0.050 4.050 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.256 0.744 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.220 0.780 49 H 0.071 0.929 50 H 0.096 0.904 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.345 -0.205 4.752 12.301 hybrid contribution 1.320 -0.053 -0.284 1.351 sum -10.025 -0.259 4.468 10.978 Atomic orbital electron populations 1.21731 0.95737 1.01298 1.01709 1.21358 0.95471 0.95968 1.02132 1.20131 0.86137 0.98107 1.03623 1.22275 0.96448 0.95772 0.89108 1.77000 0.87081 1.27168 1.22964 1.46448 1.06995 1.56117 1.06419 0.71027 1.25878 1.01047 0.90006 0.86085 1.20146 0.92393 1.27697 0.94095 1.17187 0.84778 0.74986 0.83725 1.90653 1.16663 1.52242 1.84235 1.47602 1.06981 1.73008 1.05925 1.21363 1.00290 0.97713 0.81295 1.22333 1.01670 0.94997 0.99663 1.21694 1.00186 0.96343 0.96771 1.21672 0.97160 1.00358 0.96457 1.22209 0.95603 0.99584 0.99531 1.21259 0.89830 0.91698 0.94745 0.90057 1.42417 1.01115 1.87825 1.04902 1.19331 0.96901 1.40967 0.83260 0.91140 1.24890 0.96472 1.00482 0.97459 1.69673 1.01691 1.50537 1.33414 0.86492 0.78532 0.78114 0.85313 1.20195 1.21030 1.20932 1.22919 0.79971 1.00593 1.01475 0.93004 0.92454 0.92987 0.92348 0.91685 0.88277 0.91202 0.74351 0.92581 0.89476 0.89603 0.91463 0.92544 0.92310 0.93083 0.91736 0.91836 0.91785 0.78045 0.92947 0.90403 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.15 0.37 -1.30 16 2 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 3 C -0.04 -0.62 5.32 -27.88 -0.15 -0.77 16 4 C 0.13 2.39 6.52 -82.02 -0.53 1.85 16 5 N -0.32 -6.04 12.63 33.90 0.43 -5.61 16 6 N -0.46 -8.54 6.47 30.85 0.20 -8.34 16 7 H 0.44 8.09 8.13 -182.73 -1.49 6.60 16 8 C 0.12 2.28 6.15 -16.56 -0.10 2.18 16 9 C -0.33 -6.00 5.33 -105.07 -0.56 -6.56 16 10 C 0.60 10.58 6.28 -12.52 -0.08 10.50 16 11 O -0.56 -10.53 14.35 5.27 0.08 -10.46 16 12 N -0.60 -9.12 1.70 -175.95 -0.30 -9.42 16 13 C 0.12 1.50 6.00 -4.44 -0.03 1.47 16 14 C -0.15 -1.67 5.45 -26.56 -0.14 -1.82 16 15 C -0.11 -1.33 5.75 -26.30 -0.15 -1.48 16 16 C -0.12 -1.67 5.40 -26.51 -0.14 -1.81 16 17 C -0.13 -1.99 5.10 -26.60 -0.14 -2.12 16 18 C 0.14 2.32 1.62 -68.13 -0.11 2.21 16 19 H 0.08 1.55 4.14 -51.93 -0.22 1.34 16 20 N -0.72 -14.82 4.64 -53.62 -0.25 -15.07 16 21 C -0.27 -6.23 7.59 -15.06 -0.11 -6.34 16 22 H 0.07 1.59 5.19 -52.49 -0.27 1.31 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 24 N -0.91 -23.62 13.13 55.49 0.73 -22.89 16 25 Si 0.89 19.18 29.33 -169.99 -4.99 14.20 16 26 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 C 0.08 1.17 4.42 -4.39 -0.02 1.15 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.10 1.58 6.45 -51.93 -0.33 1.25 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.24 4.54 1.68 -52.49 -0.09 4.45 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.20 6.82 -51.93 -0.35 0.85 16 40 H 0.09 1.02 3.35 -51.93 -0.17 0.85 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.04 5.38 -51.93 -0.28 0.76 16 46 H 0.06 0.89 5.47 -51.93 -0.28 0.61 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.39 8.50 8.14 -40.82 -0.33 8.16 16 49 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 50 H 0.08 1.31 5.66 -51.93 -0.29 1.02 16 51 H 0.08 1.18 6.06 -51.93 -0.31 0.87 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -26.11 368.05 -9.33 -35.45 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -8.62 Total: 21.08 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -2.15 Total: -4.48 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: 0.81 Total: -61.33 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.99 Total: 14.20 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -26.11 -9.33 -35.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088339896.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.963 kcal (2) G-P(sol) polarization free energy of solvation -26.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds