Wall clock time and date at job start Tue Mar 31 2020 19:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47374 * 2 1 4 4 C 1.50699 * 109.47598 * 180.02562 * 3 2 1 5 5 N 1.30449 * 125.99102 * 89.96737 * 4 3 2 6 6 N 1.39930 * 108.89903 * 180.02562 * 5 4 3 7 7 H 0.96998 * 125.75477 * 179.73736 * 6 5 4 8 8 C 1.34263 * 108.49269 * 0.02562 * 6 5 4 9 9 C 1.38043 * 107.41551 * 359.97438 * 8 6 5 10 10 C 1.47429 * 126.41552 * 179.97438 * 9 8 6 11 11 O 1.21606 * 120.00036 * 173.62333 * 10 9 8 12 12 N 1.34772 * 120.00041 * 353.63321 * 10 9 8 13 13 C 1.45331 * 120.36680 * 183.13116 * 12 10 9 14 14 C 1.53445 * 108.41845 * 136.65589 * 13 12 10 15 15 C 1.52881 * 109.38276 * 282.28128 * 14 13 12 16 16 C 1.53951 * 109.73416 * 72.89326 * 15 14 13 17 17 C 1.52454 * 110.72828 * 44.36279 * 16 15 14 18 18 C 1.53796 * 109.40470 * 246.27147 * 17 16 15 19 19 H 1.09004 * 109.52260 * 317.93500 * 18 17 16 20 20 N 1.46496 * 109.52470 * 197.80899 * 18 17 16 21 21 C 1.36938 * 120.00340 * 132.99924 * 20 18 17 22 22 H 1.07998 * 119.99946 * 343.98734 * 21 20 18 23 23 C 1.38814 * 120.00133 * 163.98506 * 21 20 18 24 24 N 1.31618 * 119.99877 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99847 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47269 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46800 * 119.99914 * 25 23 21 28 28 H 1.48496 * 109.46851 * 239.99492 * 25 23 21 29 29 C 1.46971 * 120.36666 * 2.85056 * 12 10 9 30 30 H 1.09002 * 109.47038 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47090 * 300.00007 * 1 2 3 32 32 H 1.08996 * 109.47274 * 59.99869 * 1 2 3 33 33 H 1.08997 * 109.47428 * 239.99455 * 2 1 3 34 34 H 1.09000 * 109.47216 * 119.99650 * 2 1 3 35 35 H 1.08997 * 109.47288 * 59.99369 * 3 2 1 36 36 H 1.09000 * 109.46663 * 299.99988 * 3 2 1 37 37 H 1.08000 * 126.29383 * 179.97438 * 8 6 5 38 38 H 1.09001 * 109.67485 * 256.38382 * 13 12 10 39 39 H 1.08999 * 109.67996 * 16.92220 * 13 12 10 40 40 H 1.09003 * 109.48482 * 42.24793 * 14 13 12 41 41 H 1.08994 * 109.48619 * 162.30273 * 14 13 12 42 42 H 1.09003 * 109.42017 * 192.97346 * 15 14 13 43 43 H 1.09002 * 109.42462 * 312.86522 * 15 14 13 44 44 H 1.08996 * 109.22316 * 164.68452 * 16 15 14 45 45 H 1.08999 * 109.22451 * 284.04886 * 16 15 14 46 46 H 1.08997 * 109.48434 * 6.25776 * 17 16 15 47 47 H 1.09005 * 109.47549 * 126.29798 * 17 16 15 48 48 H 0.97000 * 119.99979 * 313.00100 * 20 18 17 49 49 H 0.97002 * 119.99745 * 180.02562 * 24 23 21 50 50 H 1.09006 * 109.53073 * 51.52400 * 29 12 10 51 51 H 1.08993 * 109.53577 * 171.75639 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3132 1.4421 -1.0564 6 7 5.6508 1.4418 -0.6457 7 1 6.4237 1.4378 -1.2319 8 6 5.6842 1.4414 0.6965 9 6 4.3777 1.4421 1.1423 10 6 3.9326 1.4415 2.5477 11 8 2.7513 1.5592 2.8114 12 7 4.8348 1.3107 3.5403 13 6 4.3989 1.2409 4.9250 14 6 5.1949 0.1337 5.6286 15 6 4.6198 -1.2289 5.2416 16 6 5.0017 -1.5603 3.7875 17 6 6.4676 -1.2328 3.5266 18 6 6.5608 -0.0756 2.5178 19 1 5.8305 -0.2258 1.7227 20 7 7.9080 -0.0339 1.9438 21 6 8.0718 0.0900 0.5899 22 1 7.2418 -0.1007 -0.0742 23 6 9.3048 0.4606 0.0710 24 7 10.3166 0.6926 0.8803 25 14 9.5281 0.6302 -1.7759 26 1 8.2478 0.3174 -2.4601 27 1 9.9348 2.0213 -2.0996 28 1 10.5791 -0.3126 -2.2360 29 6 6.2700 1.2309 3.2340 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 6.5703 1.4407 1.3139 38 1 4.5847 2.1957 5.4168 39 1 3.3346 1.0088 4.9634 40 1 6.2399 0.1872 5.3234 41 1 5.1239 0.2651 6.7083 42 1 5.0222 -1.9939 5.9056 43 1 3.5340 -1.2035 5.3337 44 1 4.8331 -2.6216 3.6052 45 1 4.3776 -0.9768 3.1107 46 1 6.9466 -0.9402 4.4609 47 1 6.9693 -2.1108 3.1199 48 1 8.6839 -0.0940 2.5227 49 1 11.1781 0.9520 0.5177 50 1 6.5518 2.0631 2.5889 51 1 6.8433 1.2756 4.1599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088339896.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:47 Heat of formation + Delta-G solvation = 62.476007 kcal Electronic energy + Delta-G solvation = -32088.662613 eV Core-core repulsion = 28218.469798 eV Total energy + Delta-G solvation = -3870.192814 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.87000 -40.89676 -38.90553 -36.72707 -36.12687 -35.12510 -34.14240 -32.50039 -31.70457 -30.87555 -28.91442 -27.99577 -27.29625 -25.77557 -24.63412 -23.19199 -22.70066 -22.49348 -21.30590 -20.45852 -19.95456 -19.39346 -18.31044 -17.47629 -17.24418 -16.98581 -16.39717 -16.14450 -15.91503 -15.63327 -15.44976 -15.24541 -15.13999 -14.88285 -14.62981 -14.15631 -14.03569 -13.89030 -13.80267 -13.32086 -13.10457 -13.02990 -12.91090 -12.72016 -12.49917 -12.35801 -12.19976 -12.19194 -12.01585 -11.92425 -11.89191 -11.72289 -11.59080 -11.53300 -11.41222 -11.13168 -10.93023 -10.68461 -10.36448 -9.69371 -9.48299 -8.89690 -8.02026 -5.34111 0.67488 1.16579 1.38462 1.43459 1.48961 1.81593 2.19913 2.46462 2.50726 3.30561 3.48466 3.70287 3.79738 3.89321 4.05841 4.08685 4.15792 4.17849 4.22079 4.22548 4.27983 4.36562 4.47743 4.51643 4.58278 4.66107 4.69395 4.77530 4.83979 4.85373 4.90835 4.98495 5.00040 5.03559 5.08958 5.14832 5.18988 5.23474 5.32248 5.36339 5.43860 5.46356 5.47816 5.49875 5.57993 5.62841 5.81525 6.18853 6.23151 6.46080 6.65900 7.27896 7.35126 8.00131 8.29862 9.18934 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009534 B = 0.006064 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.212299 B = 4615.981308 C = 6697.542967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.037 4.037 4 C 0.126 3.874 5 N -0.333 5.333 6 N -0.462 5.462 7 H 0.443 0.557 8 C 0.120 3.880 9 C -0.336 4.336 10 C 0.598 3.402 11 O -0.573 6.573 12 N -0.593 5.593 13 C 0.111 3.889 14 C -0.142 4.142 15 C -0.108 4.108 16 C -0.115 4.115 17 C -0.122 4.122 18 C 0.141 3.859 19 H 0.062 0.938 20 N -0.727 5.727 21 C -0.254 4.254 22 H 0.073 0.927 23 C -0.041 4.041 24 N -0.942 5.942 25 Si 0.931 3.069 26 H -0.262 1.262 27 H -0.287 1.287 28 H -0.296 1.296 29 C 0.084 3.916 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.237 0.763 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.041 0.959 46 H 0.082 0.918 47 H 0.047 0.953 48 H 0.379 0.621 49 H 0.254 0.746 50 H 0.065 0.935 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.232 -0.528 7.417 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C -0.077 4.077 4 C -0.042 4.042 5 N -0.155 5.155 6 N -0.166 5.166 7 H 0.289 0.711 8 C -0.033 4.033 9 C -0.350 4.350 10 C 0.389 3.611 11 O -0.454 6.454 12 N -0.325 5.325 13 C -0.011 4.011 14 C -0.179 4.179 15 C -0.146 4.146 16 C -0.153 4.153 17 C -0.161 4.161 18 C 0.031 3.969 19 H 0.080 0.920 20 N -0.368 5.368 21 C -0.385 4.385 22 H 0.090 0.910 23 C -0.237 4.237 24 N -0.590 5.590 25 Si 0.760 3.240 26 H -0.187 1.187 27 H -0.214 1.214 28 H -0.224 1.224 29 C -0.041 4.041 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.252 0.748 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.100 0.900 47 H 0.066 0.934 48 H 0.212 0.788 49 H 0.063 0.937 50 H 0.083 0.917 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.838 -0.408 6.092 14.216 hybrid contribution 1.684 -0.032 -0.646 1.804 sum -11.154 -0.440 5.446 12.420 Atomic orbital electron populations 1.21689 0.93405 1.02356 1.02409 1.21305 0.97445 0.94706 1.00943 1.20206 0.84395 0.99069 1.03987 1.22766 0.97711 0.94922 0.88810 1.76976 0.87113 1.27933 1.23455 1.46463 1.07126 1.56506 1.06474 0.71059 1.25825 1.01093 0.90335 0.86050 1.20368 0.92346 1.27428 0.94905 1.17161 0.84887 0.75155 0.83860 1.90639 1.17204 1.53183 1.84417 1.47560 1.06321 1.71938 1.06647 1.21600 1.00195 0.99406 0.79866 1.22300 1.00687 0.93723 1.01210 1.21682 1.00498 0.97292 0.95108 1.21613 0.95659 1.00115 0.97896 1.22112 0.96564 0.97920 0.99517 1.21251 0.87489 0.93356 0.94760 0.92018 1.42492 1.02244 1.87829 1.04189 1.19522 0.96378 1.38269 0.84357 0.90979 1.25369 0.96661 1.01664 1.00010 1.69776 1.01835 1.52927 1.34458 0.85756 0.78440 0.77331 0.82459 1.18686 1.21413 1.22364 1.22679 0.80461 0.98870 1.02049 0.91804 0.92417 0.91606 0.92791 0.93560 0.88871 0.89711 0.74799 0.90875 0.90198 0.90037 0.88504 0.90759 0.92090 0.92879 0.94009 0.89997 0.93392 0.78837 0.93705 0.91723 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.91 71.98 0.71 -2.23 16 2 C -0.11 -2.86 5.92 30.59 0.18 -2.68 16 3 C -0.04 -1.12 5.32 29.85 0.16 -0.96 16 4 C 0.13 4.54 6.52 43.52 0.28 4.82 16 5 N -0.33 -12.52 12.63 -46.67 -0.59 -13.11 16 6 N -0.46 -17.38 6.47 -56.31 -0.36 -17.74 16 7 H 0.44 16.22 8.13 -213.43 -1.74 14.49 16 8 C 0.12 4.47 6.15 84.27 0.52 4.99 16 9 C -0.34 -12.27 5.33 -20.15 -0.11 -12.38 16 10 C 0.60 20.72 6.28 86.67 0.54 21.26 16 11 O -0.57 -21.27 14.35 -4.05 -0.06 -21.33 16 12 N -0.59 -17.16 1.70 -828.83 -1.41 -18.56 16 13 C 0.11 2.58 6.00 86.75 0.52 3.10 16 14 C -0.14 -2.68 5.45 30.70 0.17 -2.51 16 15 C -0.11 -2.23 5.75 30.88 0.18 -2.06 16 16 C -0.11 -3.06 5.40 30.73 0.17 -2.89 16 17 C -0.12 -3.57 5.10 30.68 0.16 -3.41 16 18 C 0.14 4.75 1.62 44.87 0.07 4.82 16 19 H 0.06 2.37 4.14 -2.38 -0.01 2.36 16 20 N -0.73 -29.85 4.64 -323.54 -1.50 -31.35 16 21 C -0.25 -11.59 7.59 84.03 0.64 -10.95 16 22 H 0.07 3.26 5.19 -2.91 -0.02 3.24 16 23 C -0.04 -2.01 5.50 84.86 0.47 -1.55 16 24 N -0.94 -49.75 13.13 21.65 0.28 -49.46 16 25 Si 0.93 39.82 29.33 68.60 2.01 41.83 16 26 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 27 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 28 H -0.30 -13.26 7.11 99.48 0.71 -12.55 16 29 C 0.08 2.52 4.42 85.90 0.38 2.90 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 2.91 6.45 -2.39 -0.02 2.90 16 36 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.24 8.96 1.68 -2.91 0.00 8.95 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 2.03 6.82 -2.39 -0.02 2.01 16 40 H 0.08 1.64 3.35 -2.39 -0.01 1.63 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.26 7.87 -2.39 -0.02 1.24 16 44 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.04 1.31 5.38 -2.39 -0.01 1.30 16 46 H 0.08 2.09 5.47 -2.39 -0.01 2.08 16 47 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 48 H 0.38 16.69 8.14 -92.71 -0.75 15.94 16 49 H 0.25 13.25 8.31 -92.71 -0.77 12.47 16 50 H 0.06 2.16 5.66 -2.38 -0.01 2.14 16 51 H 0.11 2.74 6.06 -2.39 -0.01 2.72 16 Total: -1.00 -56.22 368.05 1.92 -54.30 By element: Atomic # 1 Polarization: 56.65 SS G_CDS: -1.50 Total: 55.15 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.04 Total: 0.28 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -3.58 Total: -130.23 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.06 Total: -21.33 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.01 Total: 41.83 kcal Total: -56.22 1.92 -54.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088339896.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.774 kcal (2) G-P(sol) polarization free energy of solvation -56.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds