Wall clock time and date at job start Tue Mar 31 2020 19:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47014 * 2 1 4 4 C 1.50703 * 109.46727 * 119.99680 * 2 1 3 5 5 N 1.30448 * 125.98920 * 300.02910 * 4 2 1 6 6 N 1.39936 * 108.89616 * 179.97438 * 5 4 2 7 7 H 0.97001 * 125.75206 * 179.97438 * 6 5 4 8 8 C 1.34259 * 108.49064 * 359.97438 * 6 5 4 9 9 C 1.38042 * 107.42049 * 359.76932 * 8 6 5 10 10 C 1.47421 * 126.41885 * 180.25794 * 9 8 6 11 11 O 1.21603 * 120.00462 * 135.06519 * 10 9 8 12 12 N 1.34780 * 119.99847 * 315.06813 * 10 9 8 13 13 C 1.45338 * 120.35383 * 3.92441 * 12 10 9 14 14 C 1.53046 * 108.62959 * 223.25425 * 13 12 10 15 15 C 1.52886 * 109.24074 * 77.97636 * 14 13 12 16 16 C 1.53968 * 109.71687 * 287.12168 * 15 14 13 17 17 C 1.52448 * 110.73401 * 315.65109 * 16 15 14 18 18 C 1.53798 * 109.41958 * 113.72561 * 17 16 15 19 19 H 1.08994 * 109.52447 * 42.03681 * 18 17 16 20 20 N 1.46508 * 109.51863 * 162.22122 * 18 17 16 21 21 C 1.36938 * 120.00012 * 204.68439 * 20 18 17 22 22 H 1.08000 * 119.99732 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99677 * 180.02562 * 21 20 18 24 24 N 1.31614 * 120.00457 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99746 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46762 * 90.00043 * 25 23 21 27 27 H 1.48497 * 109.47240 * 210.00067 * 25 23 21 28 28 H 1.48497 * 109.47050 * 330.00065 * 25 23 21 29 29 C 1.46960 * 120.35368 * 184.20804 * 12 10 9 30 30 H 1.09004 * 109.46601 * 60.00382 * 1 2 3 31 31 H 1.09002 * 109.46951 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47566 * 300.00252 * 1 2 3 33 33 H 1.08995 * 109.47187 * 239.99415 * 2 1 3 34 34 H 1.08995 * 109.47315 * 300.00077 * 3 2 1 35 35 H 1.09003 * 109.47090 * 59.99986 * 3 2 1 36 36 H 1.09004 * 109.47075 * 179.97438 * 3 2 1 37 37 H 1.08003 * 126.28702 * 180.02562 * 8 6 5 38 38 H 1.08999 * 109.67510 * 343.07980 * 13 12 10 39 39 H 1.08996 * 109.67629 * 103.61712 * 13 12 10 40 40 H 1.08996 * 109.55713 * 318.05721 * 14 13 12 41 41 H 1.08998 * 109.59075 * 197.91948 * 14 13 12 42 42 H 1.09007 * 109.43127 * 167.04736 * 15 14 13 43 43 H 1.08992 * 109.39272 * 47.17554 * 15 14 13 44 44 H 1.08998 * 109.22795 * 195.32360 * 16 15 14 45 45 H 1.09005 * 109.18873 * 75.94860 * 16 15 14 46 46 H 1.08998 * 109.47760 * 353.73985 * 17 16 15 47 47 H 1.09002 * 109.48042 * 233.71451 * 17 16 15 48 48 H 0.97003 * 119.99718 * 24.68948 * 20 18 17 49 49 H 0.97001 * 120.00069 * 180.02562 * 24 23 21 50 50 H 1.09002 * 109.53339 * 188.25938 * 29 12 10 51 51 H 1.08998 * 109.52998 * 308.40984 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.7897 -0.3683 2.4658 6 7 2.4291 -1.2732 3.3205 7 1 2.4105 -1.2471 4.2900 8 6 3.0725 -2.1837 2.5724 9 6 2.8428 -1.8676 1.2485 10 6 3.3506 -2.5986 0.0733 11 8 2.6082 -2.8432 -0.8582 12 7 4.6379 -2.9959 0.0313 13 6 5.5098 -2.7832 1.1745 14 6 6.8628 -2.2764 0.6698 15 6 6.7475 -0.7916 0.3240 16 6 5.9375 -0.6221 -0.9744 17 6 6.3839 -1.6328 -2.0248 18 6 5.2390 -2.6218 -2.3017 19 1 4.2948 -2.0801 -2.3556 20 7 5.4832 -3.3100 -3.5718 21 6 4.4342 -3.8325 -4.2802 22 1 3.4268 -3.7369 -3.9027 23 6 4.6657 -4.4850 -5.4832 24 7 5.8934 -4.6020 -5.9430 25 14 3.2347 -5.1985 -6.4492 26 1 2.7135 -4.1747 -7.3902 27 1 3.6962 -6.3847 -7.2141 28 1 2.1570 -5.6030 -5.5111 29 6 5.1764 -3.6431 -1.1732 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 3.6584 -3.0135 2.9392 38 1 5.0668 -2.0435 1.8413 39 1 5.6498 -3.7227 1.7090 40 1 7.1531 -2.8352 -0.2198 41 1 7.6162 -2.4114 1.4458 42 1 7.7444 -0.3727 0.1868 43 1 6.2433 -0.2688 1.1367 44 1 6.0857 0.3863 -1.3609 45 1 4.8796 -0.7719 -0.7589 46 1 7.2541 -2.1774 -1.6584 47 1 6.6432 -1.1099 -2.9453 48 1 6.3880 -3.3956 -3.9109 49 1 6.0550 -5.0577 -6.7839 50 1 6.1780 -4.0206 -0.9672 51 1 4.5280 -4.4697 -1.4636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088340759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:56 Heat of formation + Delta-G solvation = 49.284318 kcal Electronic energy + Delta-G solvation = -31393.140227 eV Core-core repulsion = 27522.375378 eV Total energy + Delta-G solvation = -3870.764849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.65808 -39.79630 -37.26298 -35.64857 -34.93637 -33.75181 -32.07607 -30.88673 -30.50717 -29.60084 -27.26240 -27.08743 -26.13530 -24.04632 -23.48231 -22.98433 -21.81204 -20.85421 -19.73965 -19.39203 -18.99265 -17.50315 -16.98719 -16.50613 -15.84837 -15.73765 -14.89977 -14.74901 -14.66658 -14.50679 -14.39467 -13.83432 -13.59714 -13.50606 -13.28801 -13.03929 -12.95086 -12.69950 -12.51162 -12.15617 -12.10559 -11.70735 -11.51338 -11.43937 -11.19270 -11.08056 -10.99827 -10.88231 -10.74069 -10.68943 -10.61432 -10.40493 -10.17673 -10.01930 -9.80868 -9.59990 -9.51550 -9.37651 -8.91778 -8.75992 -8.13429 -6.84861 -5.66128 -2.94199 1.50112 2.23709 2.55432 3.22338 3.52127 3.54101 3.58481 3.62742 4.34390 4.52924 4.68129 4.77481 4.90924 4.95933 5.00194 5.12629 5.21016 5.30477 5.34627 5.37895 5.41007 5.46911 5.55005 5.67106 5.68730 5.70768 5.81001 5.86234 5.87257 5.90280 5.93053 6.02153 6.05235 6.12196 6.19324 6.24177 6.25869 6.29170 6.42895 6.44745 6.52251 6.57940 6.76346 6.83225 6.95555 6.96130 7.26138 7.44629 7.82947 7.92133 8.53178 8.62733 9.64807 10.19860 10.55195 11.56631 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011794 B = 0.004263 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.515335 B = 6566.243846 C = 7652.866625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.023 4.023 3 C -0.141 4.141 4 C 0.138 3.862 5 N -0.294 5.294 6 N -0.467 5.467 7 H 0.441 0.559 8 C 0.089 3.911 9 C -0.268 4.268 10 C 0.584 3.416 11 O -0.520 6.520 12 N -0.598 5.598 13 C 0.102 3.898 14 C -0.151 4.151 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.130 4.130 18 C 0.166 3.834 19 H 0.061 0.939 20 N -0.720 5.720 21 C -0.230 4.230 22 H 0.075 0.925 23 C -0.015 4.015 24 N -0.937 5.937 25 Si 0.903 3.097 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.281 1.281 29 C 0.100 3.900 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.184 0.816 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.383 0.617 49 H 0.253 0.747 50 H 0.071 0.929 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 9.111 22.284 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.044 4.044 3 C -0.199 4.199 4 C -0.030 4.030 5 N -0.116 5.116 6 N -0.172 5.172 7 H 0.285 0.715 8 C -0.062 4.062 9 C -0.283 4.283 10 C 0.371 3.629 11 O -0.396 6.396 12 N -0.332 5.332 13 C -0.022 4.022 14 C -0.188 4.188 15 C -0.149 4.149 16 C -0.154 4.154 17 C -0.168 4.168 18 C 0.055 3.945 19 H 0.079 0.921 20 N -0.360 5.360 21 C -0.361 4.361 22 H 0.093 0.907 23 C -0.210 4.210 24 N -0.587 5.587 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.220 1.220 28 H -0.206 1.206 29 C -0.024 4.024 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.200 0.800 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.216 0.784 49 H 0.063 0.937 50 H 0.090 0.910 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.139 9.730 22.437 24.549 hybrid contribution 0.197 -1.256 -0.406 1.334 sum -1.941 8.474 22.031 23.685 Atomic orbital electron populations 1.21758 0.93592 1.02332 1.01927 1.19771 0.96416 0.95461 0.92738 1.21810 1.01190 0.94708 1.02166 1.22326 0.93982 0.93240 0.93423 1.77074 1.19841 1.14300 1.00398 1.46069 1.39995 1.21804 1.09343 0.71498 1.23109 0.96757 0.95212 0.91134 1.20414 1.11540 1.03239 0.93144 1.17259 0.81502 0.78646 0.85524 1.90850 1.56084 1.54950 1.37703 1.47804 1.09405 1.59907 1.16108 1.21657 0.91241 1.00141 0.89156 1.22267 0.96430 0.97521 1.02626 1.21694 0.99909 0.95555 0.97724 1.21657 1.00459 0.98627 0.94636 1.22088 0.99003 0.97407 0.98295 1.20685 0.96547 0.91302 0.85953 0.92122 1.42407 1.07522 1.66647 1.19431 1.19369 0.88570 1.27508 1.00634 0.90684 1.24702 0.96256 1.01789 0.98265 1.69662 1.18244 1.48763 1.21993 0.86225 0.81891 0.78366 0.80052 1.21815 1.21978 1.20639 1.22608 0.98339 0.97798 0.83610 0.91880 0.92330 0.92477 0.88043 0.91810 0.92327 0.92600 0.79954 0.90072 0.92477 0.89142 0.91529 0.92431 0.92735 0.93000 0.91785 0.91946 0.91856 0.78366 0.93727 0.91024 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.18 37.16 0.34 -1.33 16 2 C -0.02 -0.31 3.28 -91.77 -0.30 -0.61 16 3 C -0.14 -1.59 9.18 37.16 0.34 -1.25 16 4 C 0.14 1.86 5.77 -82.02 -0.47 1.38 16 5 N -0.29 -3.54 12.63 33.90 0.43 -3.12 16 6 N -0.47 -3.99 7.29 30.85 0.22 -3.77 16 7 H 0.44 2.06 8.96 -182.72 -1.64 0.42 16 8 C 0.09 0.82 9.63 -16.56 -0.16 0.66 16 9 C -0.27 -3.58 5.20 -105.07 -0.55 -4.13 16 10 C 0.58 9.63 5.64 -12.52 -0.07 9.56 16 11 O -0.52 -11.03 14.98 5.28 0.08 -10.95 16 12 N -0.60 -8.74 1.69 -175.88 -0.30 -9.04 16 13 C 0.10 1.06 4.98 -4.64 -0.02 1.03 16 14 C -0.15 -1.56 5.45 -26.77 -0.15 -1.70 16 15 C -0.11 -1.22 5.75 -26.29 -0.15 -1.37 16 16 C -0.12 -1.61 5.40 -26.51 -0.14 -1.75 16 17 C -0.13 -2.15 4.97 -26.60 -0.13 -2.29 16 18 C 0.17 3.37 2.40 -67.85 -0.16 3.21 16 19 H 0.06 1.40 6.28 -51.93 -0.33 1.07 16 20 N -0.72 -18.22 5.13 -53.35 -0.27 -18.50 16 21 C -0.23 -6.58 9.90 -15.06 -0.15 -6.73 16 22 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 23 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 24 N -0.94 -28.65 13.06 55.49 0.72 -27.92 16 25 Si 0.90 23.35 29.55 -169.99 -5.02 18.33 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 28 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 29 C 0.10 1.81 4.75 -4.13 -0.02 1.79 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.61 6.77 -51.93 -0.35 1.26 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.18 1.06 7.31 -52.48 -0.38 0.67 16 38 H 0.08 0.74 4.57 -51.93 -0.24 0.50 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 1.10 3.35 -51.93 -0.17 0.93 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.56 7.85 -51.93 -0.41 0.15 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.99 5.38 -51.93 -0.28 0.71 16 46 H 0.06 0.96 5.47 -51.93 -0.28 0.67 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 49 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 50 H 0.07 1.17 6.07 -51.93 -0.32 0.85 16 51 H 0.08 1.64 8.02 -51.93 -0.42 1.23 16 LS Contribution 386.16 15.07 5.82 5.82 Total: -1.00 -34.62 386.16 -9.54 -44.16 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -9.33 Total: 9.04 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -1.89 Total: -4.04 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.81 Total: -62.34 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.62 -9.54 -44.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088340759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.440 kcal (2) G-P(sol) polarization free energy of solvation -34.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds