Wall clock time and date at job start Tue Mar 31 2020 19:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47014 * 2 1 4 4 C 1.50703 * 109.46727 * 119.99680 * 2 1 3 5 5 N 1.30448 * 125.98920 * 300.02910 * 4 2 1 6 6 N 1.39936 * 108.89616 * 179.97438 * 5 4 2 7 7 H 0.97001 * 125.75206 * 179.97438 * 6 5 4 8 8 C 1.34259 * 108.49064 * 359.97438 * 6 5 4 9 9 C 1.38042 * 107.42049 * 359.76932 * 8 6 5 10 10 C 1.47421 * 126.41885 * 180.25794 * 9 8 6 11 11 O 1.21603 * 120.00462 * 135.06519 * 10 9 8 12 12 N 1.34780 * 119.99847 * 315.06813 * 10 9 8 13 13 C 1.45338 * 120.35383 * 3.92441 * 12 10 9 14 14 C 1.53046 * 108.62959 * 223.25425 * 13 12 10 15 15 C 1.52886 * 109.24074 * 77.97636 * 14 13 12 16 16 C 1.53968 * 109.71687 * 287.12168 * 15 14 13 17 17 C 1.52448 * 110.73401 * 315.65109 * 16 15 14 18 18 C 1.53798 * 109.41958 * 113.72561 * 17 16 15 19 19 H 1.08994 * 109.52447 * 42.03681 * 18 17 16 20 20 N 1.46508 * 109.51863 * 162.22122 * 18 17 16 21 21 C 1.36938 * 120.00012 * 204.68439 * 20 18 17 22 22 H 1.08000 * 119.99732 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99677 * 180.02562 * 21 20 18 24 24 N 1.31614 * 120.00457 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99746 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46762 * 90.00043 * 25 23 21 27 27 H 1.48497 * 109.47240 * 210.00067 * 25 23 21 28 28 H 1.48497 * 109.47050 * 330.00065 * 25 23 21 29 29 C 1.46960 * 120.35368 * 184.20804 * 12 10 9 30 30 H 1.09004 * 109.46601 * 60.00382 * 1 2 3 31 31 H 1.09002 * 109.46951 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47566 * 300.00252 * 1 2 3 33 33 H 1.08995 * 109.47187 * 239.99415 * 2 1 3 34 34 H 1.08995 * 109.47315 * 300.00077 * 3 2 1 35 35 H 1.09003 * 109.47090 * 59.99986 * 3 2 1 36 36 H 1.09004 * 109.47075 * 179.97438 * 3 2 1 37 37 H 1.08003 * 126.28702 * 180.02562 * 8 6 5 38 38 H 1.08999 * 109.67510 * 343.07980 * 13 12 10 39 39 H 1.08996 * 109.67629 * 103.61712 * 13 12 10 40 40 H 1.08996 * 109.55713 * 318.05721 * 14 13 12 41 41 H 1.08998 * 109.59075 * 197.91948 * 14 13 12 42 42 H 1.09007 * 109.43127 * 167.04736 * 15 14 13 43 43 H 1.08992 * 109.39272 * 47.17554 * 15 14 13 44 44 H 1.08998 * 109.22795 * 195.32360 * 16 15 14 45 45 H 1.09005 * 109.18873 * 75.94860 * 16 15 14 46 46 H 1.08998 * 109.47760 * 353.73985 * 17 16 15 47 47 H 1.09002 * 109.48042 * 233.71451 * 17 16 15 48 48 H 0.97003 * 119.99718 * 24.68948 * 20 18 17 49 49 H 0.97001 * 120.00069 * 180.02562 * 24 23 21 50 50 H 1.09002 * 109.53339 * 188.25938 * 29 12 10 51 51 H 1.08998 * 109.52998 * 308.40984 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.7897 -0.3683 2.4658 6 7 2.4291 -1.2732 3.3205 7 1 2.4105 -1.2471 4.2900 8 6 3.0725 -2.1837 2.5724 9 6 2.8428 -1.8676 1.2485 10 6 3.3506 -2.5986 0.0733 11 8 2.6082 -2.8432 -0.8582 12 7 4.6379 -2.9959 0.0313 13 6 5.5098 -2.7832 1.1745 14 6 6.8628 -2.2764 0.6698 15 6 6.7475 -0.7916 0.3240 16 6 5.9375 -0.6221 -0.9744 17 6 6.3839 -1.6328 -2.0248 18 6 5.2390 -2.6218 -2.3017 19 1 4.2948 -2.0801 -2.3556 20 7 5.4832 -3.3100 -3.5718 21 6 4.4342 -3.8325 -4.2802 22 1 3.4268 -3.7369 -3.9027 23 6 4.6657 -4.4850 -5.4832 24 7 5.8934 -4.6020 -5.9430 25 14 3.2347 -5.1985 -6.4492 26 1 2.7135 -4.1747 -7.3902 27 1 3.6962 -6.3847 -7.2141 28 1 2.1570 -5.6030 -5.5111 29 6 5.1764 -3.6431 -1.1732 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 3.6584 -3.0135 2.9392 38 1 5.0668 -2.0435 1.8413 39 1 5.6498 -3.7227 1.7090 40 1 7.1531 -2.8352 -0.2198 41 1 7.6162 -2.4114 1.4458 42 1 7.7444 -0.3727 0.1868 43 1 6.2433 -0.2688 1.1367 44 1 6.0857 0.3863 -1.3609 45 1 4.8796 -0.7719 -0.7589 46 1 7.2541 -2.1774 -1.6584 47 1 6.6432 -1.1099 -2.9453 48 1 6.3880 -3.3956 -3.9109 49 1 6.0550 -5.0577 -6.7839 50 1 6.1780 -4.0206 -0.9672 51 1 4.5280 -4.4697 -1.4636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088340759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:54 Heat of formation + Delta-G solvation = 25.852686 kcal Electronic energy + Delta-G solvation = -31394.156299 eV Core-core repulsion = 27522.375378 eV Total energy + Delta-G solvation = -3871.780921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.59166 -40.99534 -38.57483 -36.74006 -36.49666 -35.02260 -33.90800 -31.82749 -31.51015 -31.23515 -28.67676 -28.05188 -27.31043 -25.80476 -24.53442 -24.24173 -22.87592 -22.30244 -20.82768 -20.51650 -19.95122 -19.10443 -18.51953 -17.60942 -17.21865 -17.01710 -16.28034 -15.87387 -15.75657 -15.64276 -15.52051 -15.39821 -15.11624 -14.94428 -14.29901 -14.22729 -14.08595 -13.96493 -13.89963 -13.46276 -13.09163 -13.06408 -12.99154 -12.78869 -12.60313 -12.40157 -12.20715 -12.18060 -12.04848 -12.00596 -11.93486 -11.74512 -11.64740 -11.41803 -11.36847 -11.23144 -10.98721 -10.69633 -10.46011 -9.71817 -9.51726 -8.88930 -7.94357 -5.21536 0.67633 1.19551 1.43458 1.44596 1.54654 1.80252 2.06591 2.37418 2.57252 3.38412 3.43037 3.68201 3.73962 3.94401 4.04603 4.04914 4.12314 4.15633 4.22111 4.23700 4.30940 4.36197 4.47824 4.51899 4.58072 4.60567 4.68523 4.76679 4.80810 4.84211 4.91144 4.91779 4.94535 4.98094 5.07636 5.08876 5.19602 5.25583 5.29339 5.31313 5.35556 5.44417 5.48879 5.49552 5.55406 5.61748 5.80851 6.30007 6.32749 6.55665 6.69070 7.35933 7.39905 8.09449 8.35850 9.28543 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011794 B = 0.004263 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.515335 B = 6566.243846 C = 7652.866625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.027 4.027 3 C -0.132 4.132 4 C 0.125 3.875 5 N -0.306 5.306 6 N -0.443 5.443 7 H 0.462 0.538 8 C 0.126 3.874 9 C -0.307 4.307 10 C 0.583 3.417 11 O -0.585 6.585 12 N -0.591 5.591 13 C 0.094 3.906 14 C -0.149 4.149 15 C -0.104 4.104 16 C -0.112 4.112 17 C -0.118 4.118 18 C 0.167 3.833 19 H 0.024 0.976 20 N -0.730 5.730 21 C -0.231 4.231 22 H 0.056 0.944 23 C -0.067 4.067 24 N -0.965 5.965 25 Si 0.962 3.038 26 H -0.287 1.287 27 H -0.287 1.287 28 H -0.281 1.281 29 C 0.118 3.882 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.228 0.772 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.042 0.958 48 H 0.376 0.624 49 H 0.252 0.748 50 H 0.095 0.905 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 9.642 26.261 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.048 4.048 3 C -0.189 4.189 4 C -0.042 4.042 5 N -0.129 5.129 6 N -0.150 5.150 7 H 0.311 0.689 8 C -0.028 4.028 9 C -0.322 4.322 10 C 0.372 3.628 11 O -0.465 6.465 12 N -0.323 5.323 13 C -0.028 4.028 14 C -0.186 4.186 15 C -0.142 4.142 16 C -0.150 4.150 17 C -0.156 4.156 18 C 0.058 3.942 19 H 0.042 0.958 20 N -0.370 5.370 21 C -0.363 4.363 22 H 0.074 0.926 23 C -0.260 4.260 24 N -0.616 5.616 25 Si 0.792 3.208 26 H -0.214 1.214 27 H -0.213 1.213 28 H -0.207 1.207 29 C -0.007 4.007 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.244 0.756 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.122 0.878 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.101 0.899 47 H 0.061 0.939 48 H 0.208 0.792 49 H 0.061 0.939 50 H 0.113 0.887 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.999 10.304 26.521 28.470 hybrid contribution -0.168 -1.376 -1.523 2.059 sum -1.167 8.928 24.998 26.570 Atomic orbital electron populations 1.21705 0.92958 1.01398 1.02909 1.19687 0.97001 0.96295 0.91828 1.21735 1.00767 0.93489 1.02958 1.22266 0.94459 0.93702 0.93790 1.77020 1.20530 1.15395 0.99959 1.46088 1.38242 1.20481 1.10219 0.68947 1.23570 0.94937 0.94981 0.89267 1.20202 1.14109 1.04213 0.93658 1.17766 0.81475 0.77857 0.85706 1.90814 1.57906 1.57406 1.40388 1.47736 1.09542 1.58901 1.16132 1.22071 0.90493 1.02443 0.87758 1.22261 0.97091 0.96390 1.02865 1.21676 1.00051 0.96571 0.95870 1.21595 0.99909 0.97702 0.95768 1.21973 0.98051 0.97047 0.98556 1.20773 0.96436 0.92031 0.84942 0.95797 1.42501 1.06285 1.67000 1.21248 1.19429 0.88667 1.27143 1.01023 0.92558 1.25362 0.98588 1.02774 0.99229 1.69779 1.19679 1.49810 1.22313 0.85310 0.79175 0.77744 0.78619 1.21410 1.21299 1.20662 1.22010 0.98538 0.95603 0.84582 0.91044 0.94169 0.91237 0.91897 0.91176 0.91253 0.93110 0.75595 0.88059 0.89296 0.91254 0.87810 0.90997 0.91141 0.92692 0.93750 0.89930 0.93909 0.79159 0.93941 0.88652 0.95078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.18 71.98 0.66 -2.64 16 2 C -0.03 -0.77 3.28 -11.54 -0.04 -0.80 16 3 C -0.13 -2.98 9.18 71.98 0.66 -2.32 16 4 C 0.13 3.31 5.77 43.52 0.25 3.56 16 5 N -0.31 -6.70 12.63 -46.67 -0.59 -7.29 16 6 N -0.44 -5.78 7.29 -56.32 -0.41 -6.19 16 7 H 0.46 2.04 8.96 -213.43 -1.91 0.13 16 8 C 0.13 1.82 9.63 84.28 0.81 2.63 16 9 C -0.31 -7.87 5.20 -20.15 -0.10 -7.97 16 10 C 0.58 19.78 5.64 86.66 0.49 20.26 16 11 O -0.58 -26.96 14.98 -4.04 -0.06 -27.02 16 12 N -0.59 -16.99 1.69 -828.63 -1.40 -18.39 16 13 C 0.09 1.58 4.98 86.61 0.43 2.01 16 14 C -0.15 -2.44 5.45 30.57 0.17 -2.27 16 15 C -0.10 -1.91 5.75 30.88 0.18 -1.74 16 16 C -0.11 -3.05 5.40 30.74 0.17 -2.88 16 17 C -0.12 -4.00 4.97 30.68 0.15 -3.84 16 18 C 0.17 7.21 2.40 45.04 0.11 7.31 16 19 H 0.02 1.21 6.28 -2.39 -0.02 1.19 16 20 N -0.73 -39.08 5.13 -322.71 -1.65 -40.73 16 21 C -0.23 -13.96 9.90 84.03 0.83 -13.13 16 22 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 23 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 24 N -0.96 -60.58 13.06 21.65 0.28 -60.30 16 25 Si 0.96 49.63 29.55 68.60 2.03 51.66 16 26 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 28 H -0.28 -14.35 7.11 99.48 0.71 -13.65 16 29 C 0.12 4.38 4.75 86.07 0.41 4.79 16 30 H 0.07 1.60 8.14 -2.38 -0.02 1.59 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 2.23 6.77 -2.39 -0.02 2.21 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.23 1.19 7.31 -2.91 -0.02 1.17 16 38 H 0.10 1.34 4.57 -2.39 -0.01 1.33 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.47 3.35 -2.39 -0.01 1.47 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.07 1.13 7.85 -2.39 -0.02 1.11 16 44 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.04 1.40 5.38 -2.38 -0.01 1.39 16 46 H 0.08 2.45 5.47 -2.39 -0.01 2.44 16 47 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.38 20.85 7.80 -92.71 -0.72 20.13 16 49 H 0.25 15.27 8.31 -92.71 -0.77 14.49 16 50 H 0.10 3.07 6.07 -2.39 -0.01 3.05 16 51 H 0.03 1.43 8.02 -2.39 -0.02 1.41 16 Total: -1.00 -82.82 386.16 2.16 -80.66 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: -1.67 Total: 28.25 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 5.64 Total: -0.64 kcal Atomic # 7 Polarization: -129.14 SS G_CDS: -3.77 Total: -132.91 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.06 Total: -27.02 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.03 Total: 51.66 kcal Total: -82.82 2.16 -80.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088340759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.508 kcal (2) G-P(sol) polarization free energy of solvation -82.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds