Wall clock time and date at job start Tue Mar 31 2020 19:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47181 * 2 1 4 4 C 1.50705 * 109.46749 * 179.97438 * 3 2 1 5 5 C 1.35365 * 126.38921 * 274.99643 * 4 3 2 6 6 C 1.41500 * 105.50387 * 179.97438 * 5 4 3 7 7 C 1.47709 * 126.51722 * 180.02562 * 6 5 4 8 8 O 1.21569 * 120.00120 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99919 * 179.97438 * 7 6 5 10 10 C 1.46960 * 120.35207 * 0.02562 * 9 7 6 11 11 C 1.52337 * 109.09252 * 68.38053 * 10 9 7 12 12 C 1.53793 * 109.16584 * 72.69721 * 11 10 9 13 13 C 1.52447 * 109.42580 * 282.13494 * 12 11 10 14 14 C 1.53962 * 110.73689 * 113.72823 * 13 12 11 15 15 C 1.52882 * 109.71323 * 315.64924 * 14 13 12 16 16 H 1.09001 * 109.48488 * 47.09985 * 15 14 13 17 17 N 1.46500 * 109.48252 * 167.12486 * 15 14 13 18 18 C 1.36934 * 120.00196 * 204.99858 * 17 15 14 19 19 H 1.07999 * 119.99924 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99772 * 179.97438 * 18 17 15 21 21 N 1.31622 * 120.00343 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99695 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47496 * 60.00391 * 22 20 18 24 24 H 1.48501 * 109.47107 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47141 * 299.99915 * 22 20 18 26 26 C 1.45332 * 120.35640 * 179.72344 * 9 7 6 27 27 N 1.31807 * 106.96349 * 0.02562 * 6 5 4 28 28 N 1.28474 * 110.07444 * 359.97438 * 27 6 5 29 29 H 0.97001 * 124.88259 * 180.02562 * 28 27 6 30 30 H 1.09004 * 109.47173 * 59.99426 * 1 2 3 31 31 H 1.08994 * 109.47515 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47040 * 299.99864 * 1 2 3 33 33 H 1.09003 * 109.47040 * 240.00136 * 2 1 3 34 34 H 1.09004 * 109.47173 * 120.00573 * 2 1 3 35 35 H 1.08997 * 109.46775 * 60.00781 * 3 2 1 36 36 H 1.08994 * 109.47352 * 299.99813 * 3 2 1 37 37 H 1.08000 * 127.24694 * 359.97147 * 5 4 3 38 38 H 1.09008 * 109.53274 * 188.26274 * 10 9 7 39 39 H 1.08998 * 109.53900 * 308.41505 * 10 9 7 40 40 H 1.08994 * 109.52516 * 192.60892 * 11 10 9 41 41 H 1.09007 * 109.51642 * 312.73131 * 11 10 9 42 42 H 1.08999 * 109.47951 * 42.11999 * 12 11 10 43 43 H 1.08998 * 109.48232 * 162.14519 * 12 11 10 44 44 H 1.09005 * 109.22412 * 234.05256 * 13 12 11 45 45 H 1.08995 * 109.22187 * 353.44554 * 13 12 11 46 46 H 1.09000 * 109.43435 * 75.72088 * 14 13 12 47 47 H 1.09000 * 109.43333 * 195.57739 * 14 13 12 48 48 H 0.96999 * 119.99875 * 24.99841 * 17 15 14 49 49 H 0.96999 * 119.99946 * 179.97438 * 21 20 18 50 50 H 1.09007 * 109.67362 * 343.07662 * 26 9 7 51 51 H 1.08994 * 109.67700 * 103.61203 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3496 1.3476 1.0865 6 6 5.6719 1.3907 0.5845 7 6 6.9159 1.3207 1.3777 8 8 6.8604 1.2154 2.5876 9 7 8.1127 1.3735 0.7602 10 6 8.1890 1.5013 -0.7019 11 6 7.6865 2.8807 -1.1084 12 6 8.7350 3.9356 -0.7171 13 6 8.6427 4.2115 0.7793 14 6 9.9177 3.7376 1.5007 15 6 10.3177 2.3548 0.9858 16 1 10.2849 2.3489 -0.1037 17 7 11.6761 2.0402 1.4353 18 6 12.4427 1.1523 0.7289 19 1 12.0461 0.6842 -0.1599 20 6 13.7300 0.8547 1.1546 21 7 14.2136 1.4255 2.2375 22 14 14.7760 -0.3560 0.1904 23 1 14.9632 0.1451 -1.1949 24 1 16.0996 -0.5000 0.8482 25 1 14.0967 -1.6760 0.1519 26 6 9.3417 1.3113 1.5335 27 7 5.5823 1.5053 -0.7255 28 7 4.3484 1.5367 -1.0821 29 1 4.0373 1.6164 -1.9974 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9562 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 4.0449 1.2579 2.1188 38 1 9.2230 1.3803 -1.0249 39 1 7.5697 0.7347 -1.1676 40 1 7.5275 2.9075 -2.1863 41 1 6.7475 3.0917 -0.5964 42 1 9.7313 3.5643 -0.9575 43 1 8.5474 4.8567 -1.2688 44 1 8.5166 5.2823 0.9397 45 1 7.7819 3.6834 1.1892 46 1 10.7261 4.4434 1.3097 47 1 9.7292 3.6847 2.5730 48 1 12.0325 2.4609 2.2334 49 1 15.1130 1.2172 2.5351 50 1 9.1273 1.5241 2.5809 51 1 9.7823 0.3185 1.4430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088356920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:58 Heat of formation + Delta-G solvation = 57.442837 kcal Electronic energy + Delta-G solvation = -30221.597581 eV Core-core repulsion = 26351.186512 eV Total energy + Delta-G solvation = -3870.411069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.87934 -39.93842 -37.42388 -35.76905 -34.78617 -33.68117 -32.40920 -31.71262 -31.13587 -29.81620 -27.28882 -26.84211 -26.05273 -24.42997 -23.03197 -22.40785 -22.02448 -21.32411 -21.16129 -19.18037 -18.37864 -17.95957 -17.14428 -16.44499 -16.02547 -15.83123 -15.51731 -15.41547 -14.51354 -14.34712 -14.09821 -13.93408 -13.87224 -13.61464 -13.52491 -13.40773 -13.08791 -12.74725 -12.62688 -12.37604 -12.26735 -11.90010 -11.75078 -11.44697 -11.37916 -11.20060 -11.18939 -10.84969 -10.76512 -10.67328 -10.49621 -10.35784 -10.17087 -10.13392 -9.81138 -9.68495 -9.57846 -9.37992 -8.99688 -8.88678 -8.08378 -6.94864 -5.75354 -3.04686 1.57741 1.99810 2.68633 3.37661 3.45443 3.49685 3.50448 3.60630 4.21879 4.37477 4.49203 4.59172 4.60459 4.84775 4.99816 5.03736 5.13730 5.22647 5.24909 5.31730 5.33491 5.48187 5.51279 5.55616 5.59737 5.60989 5.65281 5.76153 5.81382 5.85429 5.85743 5.95489 6.03965 6.07952 6.13797 6.22446 6.30882 6.35160 6.42236 6.46561 6.57868 6.68578 6.76634 6.81285 6.89295 6.94269 7.19180 7.69248 7.71091 7.83496 8.42537 8.51006 9.53925 10.11217 10.46142 11.46881 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020324 B = 0.002686 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.333376 B =10421.971322 C =10721.865692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.049 4.049 4 C 0.011 3.989 5 C -0.175 4.175 6 C -0.005 4.005 7 C 0.593 3.407 8 O -0.541 6.541 9 N -0.582 5.582 10 C 0.112 3.888 11 C -0.124 4.124 12 C -0.131 4.131 13 C -0.112 4.112 14 C -0.123 4.123 15 C 0.158 3.842 16 H 0.067 0.933 17 N -0.719 5.719 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.089 3.911 27 N -0.243 5.243 28 N -0.387 5.387 29 H 0.441 0.559 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.159 0.841 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.081 0.919 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.102 2.312 -9.025 28.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.088 4.088 4 C -0.115 4.115 5 C -0.203 4.203 6 C -0.165 4.165 7 C 0.378 3.622 8 O -0.417 6.417 9 N -0.314 5.314 10 C -0.011 4.011 11 C -0.162 4.162 12 C -0.168 4.168 13 C -0.151 4.151 14 C -0.161 4.161 15 C 0.047 3.953 16 H 0.084 0.916 17 N -0.360 5.360 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.036 4.036 27 N -0.079 5.079 28 N -0.101 5.101 29 H 0.285 0.715 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.177 0.823 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.099 0.901 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.294 2.211 -9.385 28.006 hybrid contribution 0.128 -0.602 -0.053 0.617 sum -26.166 1.610 -9.438 27.862 Atomic orbital electron populations 1.21780 0.95284 1.02024 1.01960 1.21546 0.95928 0.95560 1.02912 1.20199 0.86522 0.98190 1.03898 1.21367 0.94852 1.07786 0.87470 1.21487 0.90591 1.08578 0.99682 1.22023 0.95330 1.09341 0.89839 1.16916 0.81787 0.77273 0.86198 1.90773 1.86515 1.51200 1.13207 1.47752 1.05679 1.70059 1.07884 1.21692 1.02387 0.97530 0.79489 1.22130 0.98810 0.94591 1.00712 1.21909 1.00337 0.98406 0.96155 1.21632 0.98567 0.99663 0.95209 1.22020 0.96769 0.97759 0.99590 1.20839 0.85403 0.90870 0.98147 0.91571 1.42408 1.09429 1.52124 1.32004 1.19164 0.94797 1.17267 1.06025 0.91260 1.24749 0.97571 1.00503 0.97935 1.69655 1.17059 1.46442 1.24647 0.86290 0.79785 0.81108 0.79117 1.21277 1.21723 1.21267 1.22571 0.82653 1.01831 0.96563 1.74045 1.00319 1.18483 1.15091 1.43484 1.03366 1.53581 1.09670 0.71492 0.92721 0.92449 0.92392 0.92006 0.91113 0.89136 0.90748 0.82334 0.89397 0.90651 0.91721 0.90822 0.90450 0.92933 0.93244 0.92377 0.91796 0.92437 0.78109 0.93424 0.90098 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.16 0.37 -0.27 16 2 C -0.12 -0.63 5.92 -26.73 -0.16 -0.79 16 3 C -0.05 -0.25 5.77 -27.88 -0.16 -0.42 16 4 C 0.01 0.09 6.48 -82.21 -0.53 -0.44 16 5 C -0.18 -2.08 10.73 -39.36 -0.42 -2.50 16 6 C 0.00 -0.07 6.05 -82.77 -0.50 -0.57 16 7 C 0.59 10.35 6.25 -12.39 -0.08 10.27 16 8 O -0.54 -11.12 16.36 5.30 0.09 -11.03 16 9 N -0.58 -9.84 1.69 -175.79 -0.30 -10.13 16 10 C 0.11 1.60 4.88 -4.13 -0.02 1.58 16 11 C -0.12 -1.57 4.45 -26.66 -0.12 -1.69 16 12 C -0.13 -1.80 5.49 -26.60 -0.15 -1.95 16 13 C -0.11 -1.72 5.40 -26.51 -0.14 -1.87 16 14 C -0.12 -2.20 5.21 -26.29 -0.14 -2.34 16 15 C 0.16 3.15 2.29 -67.98 -0.16 3.00 16 16 H 0.07 1.30 3.29 -51.93 -0.17 1.13 16 17 N -0.72 -17.94 5.12 -53.47 -0.27 -18.21 16 18 C -0.24 -6.59 9.88 -15.06 -0.15 -6.74 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 22 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.09 1.75 5.57 -4.66 -0.03 1.72 16 27 N -0.24 -2.82 6.78 33.42 0.23 -2.60 16 28 N -0.39 -3.18 6.83 33.50 0.23 -2.95 16 29 H 0.44 2.02 8.96 -190.44 -1.71 0.31 16 30 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.09 1.33 6.07 -51.92 -0.32 1.02 16 39 H 0.08 1.02 6.71 -51.93 -0.35 0.67 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.99 4.72 -51.93 -0.25 0.74 16 42 H 0.08 1.18 5.47 -51.93 -0.28 0.90 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.96 5.38 -51.93 -0.28 0.68 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.06 1.06 7.85 -51.93 -0.41 0.65 16 48 H 0.39 10.33 7.80 -40.82 -0.32 10.01 16 49 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 50 H 0.08 1.72 6.77 -51.92 -0.35 1.36 16 51 H 0.07 1.49 8.08 -51.93 -0.42 1.07 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -32.82 385.37 -10.46 -43.28 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -9.47 Total: 9.31 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.48 Total: -3.42 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.61 Total: -61.25 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.82 -10.46 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088356920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.721 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds