Wall clock time and date at job start Tue Mar 31 2020 19:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47181 * 2 1 4 4 C 1.50705 * 109.46749 * 179.97438 * 3 2 1 5 5 C 1.35365 * 126.38921 * 274.99643 * 4 3 2 6 6 C 1.41500 * 105.50387 * 179.97438 * 5 4 3 7 7 C 1.47709 * 126.51722 * 180.02562 * 6 5 4 8 8 O 1.21569 * 120.00120 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99919 * 179.97438 * 7 6 5 10 10 C 1.46960 * 120.35207 * 0.02562 * 9 7 6 11 11 C 1.52337 * 109.09252 * 68.38053 * 10 9 7 12 12 C 1.53793 * 109.16584 * 72.69721 * 11 10 9 13 13 C 1.52447 * 109.42580 * 282.13494 * 12 11 10 14 14 C 1.53962 * 110.73689 * 113.72823 * 13 12 11 15 15 C 1.52882 * 109.71323 * 315.64924 * 14 13 12 16 16 H 1.09001 * 109.48488 * 47.09985 * 15 14 13 17 17 N 1.46500 * 109.48252 * 167.12486 * 15 14 13 18 18 C 1.36934 * 120.00196 * 204.99858 * 17 15 14 19 19 H 1.07999 * 119.99924 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99772 * 179.97438 * 18 17 15 21 21 N 1.31622 * 120.00343 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99695 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47496 * 60.00391 * 22 20 18 24 24 H 1.48501 * 109.47107 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47141 * 299.99915 * 22 20 18 26 26 C 1.45332 * 120.35640 * 179.72344 * 9 7 6 27 27 N 1.31807 * 106.96349 * 0.02562 * 6 5 4 28 28 N 1.28474 * 110.07444 * 359.97438 * 27 6 5 29 29 H 0.97001 * 124.88259 * 180.02562 * 28 27 6 30 30 H 1.09004 * 109.47173 * 59.99426 * 1 2 3 31 31 H 1.08994 * 109.47515 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47040 * 299.99864 * 1 2 3 33 33 H 1.09003 * 109.47040 * 240.00136 * 2 1 3 34 34 H 1.09004 * 109.47173 * 120.00573 * 2 1 3 35 35 H 1.08997 * 109.46775 * 60.00781 * 3 2 1 36 36 H 1.08994 * 109.47352 * 299.99813 * 3 2 1 37 37 H 1.08000 * 127.24694 * 359.97147 * 5 4 3 38 38 H 1.09008 * 109.53274 * 188.26274 * 10 9 7 39 39 H 1.08998 * 109.53900 * 308.41505 * 10 9 7 40 40 H 1.08994 * 109.52516 * 192.60892 * 11 10 9 41 41 H 1.09007 * 109.51642 * 312.73131 * 11 10 9 42 42 H 1.08999 * 109.47951 * 42.11999 * 12 11 10 43 43 H 1.08998 * 109.48232 * 162.14519 * 12 11 10 44 44 H 1.09005 * 109.22412 * 234.05256 * 13 12 11 45 45 H 1.08995 * 109.22187 * 353.44554 * 13 12 11 46 46 H 1.09000 * 109.43435 * 75.72088 * 14 13 12 47 47 H 1.09000 * 109.43333 * 195.57739 * 14 13 12 48 48 H 0.96999 * 119.99875 * 24.99841 * 17 15 14 49 49 H 0.96999 * 119.99946 * 179.97438 * 21 20 18 50 50 H 1.09007 * 109.67362 * 343.07662 * 26 9 7 51 51 H 1.08994 * 109.67700 * 103.61203 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3496 1.3476 1.0865 6 6 5.6719 1.3907 0.5845 7 6 6.9159 1.3207 1.3777 8 8 6.8604 1.2154 2.5876 9 7 8.1127 1.3735 0.7602 10 6 8.1890 1.5013 -0.7019 11 6 7.6865 2.8807 -1.1084 12 6 8.7350 3.9356 -0.7171 13 6 8.6427 4.2115 0.7793 14 6 9.9177 3.7376 1.5007 15 6 10.3177 2.3548 0.9858 16 1 10.2849 2.3489 -0.1037 17 7 11.6761 2.0402 1.4353 18 6 12.4427 1.1523 0.7289 19 1 12.0461 0.6842 -0.1599 20 6 13.7300 0.8547 1.1546 21 7 14.2136 1.4255 2.2375 22 14 14.7760 -0.3560 0.1904 23 1 14.9632 0.1451 -1.1949 24 1 16.0996 -0.5000 0.8482 25 1 14.0967 -1.6760 0.1519 26 6 9.3417 1.3113 1.5335 27 7 5.5823 1.5053 -0.7255 28 7 4.3484 1.5367 -1.0821 29 1 4.0373 1.6164 -1.9974 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9562 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 4.0449 1.2579 2.1188 38 1 9.2230 1.3803 -1.0249 39 1 7.5697 0.7347 -1.1676 40 1 7.5275 2.9075 -2.1863 41 1 6.7475 3.0917 -0.5964 42 1 9.7313 3.5643 -0.9575 43 1 8.5474 4.8567 -1.2688 44 1 8.5166 5.2823 0.9397 45 1 7.7819 3.6834 1.1892 46 1 10.7261 4.4434 1.3097 47 1 9.7292 3.6847 2.5730 48 1 12.0325 2.4609 2.2334 49 1 15.1130 1.2172 2.5351 50 1 9.1273 1.5241 2.5809 51 1 9.7823 0.3185 1.4430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088356920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:56 Heat of formation + Delta-G solvation = 37.474716 kcal Electronic energy + Delta-G solvation = -30222.463464 eV Core-core repulsion = 26351.186512 eV Total energy + Delta-G solvation = -3871.276952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.75102 -41.30877 -38.88200 -36.59529 -36.12192 -35.07688 -34.07229 -32.77300 -31.90981 -31.47303 -28.78841 -27.69589 -27.18699 -26.02807 -24.64090 -23.36014 -22.81868 -22.71614 -21.86743 -20.58059 -19.64903 -19.20381 -18.76935 -17.64120 -17.43980 -17.01263 -16.64359 -16.30137 -15.91821 -15.68662 -15.34884 -15.13499 -15.01915 -14.96764 -14.59578 -14.52717 -14.22741 -13.91973 -13.86875 -13.70572 -13.06107 -13.01255 -12.97429 -12.76323 -12.62255 -12.42736 -12.35928 -12.22306 -12.08622 -11.92732 -11.77134 -11.64804 -11.53962 -11.46225 -11.40288 -11.19664 -11.15170 -10.84084 -10.33206 -9.79540 -9.54753 -8.99564 -7.92903 -5.22788 0.54712 1.14009 1.47631 1.50950 1.56615 1.84113 2.21294 2.36728 2.57645 3.29961 3.40092 3.69983 3.75824 3.82746 3.98200 4.05127 4.12033 4.18080 4.21082 4.25026 4.34596 4.40204 4.50118 4.55077 4.55547 4.64668 4.72977 4.77581 4.85858 4.87051 4.87976 4.97116 4.99733 5.00498 5.01426 5.20537 5.22986 5.25915 5.30709 5.34559 5.37520 5.41698 5.43104 5.48236 5.49720 5.57484 5.73267 6.16583 6.27581 6.45292 6.88162 7.16691 7.33891 8.07122 8.31850 9.30274 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020324 B = 0.002686 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.333376 B =10421.971322 C =10721.865692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.045 4.045 4 C 0.039 3.961 5 C -0.201 4.201 6 C -0.035 4.035 7 C 0.589 3.411 8 O -0.585 6.585 9 N -0.582 5.582 10 C 0.111 3.889 11 C -0.113 4.113 12 C -0.128 4.128 13 C -0.105 4.105 14 C -0.117 4.117 15 C 0.161 3.839 16 H 0.079 0.921 17 N -0.732 5.732 18 C -0.238 4.238 19 H 0.079 0.921 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.972 3.028 23 H -0.274 1.274 24 H -0.298 1.298 25 H -0.280 1.280 26 C 0.105 3.895 27 N -0.240 5.240 28 N -0.363 5.363 29 H 0.461 0.539 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.153 0.847 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.045 0.955 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.372 0.628 49 H 0.250 0.750 50 H 0.058 0.942 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.962 2.808 -12.453 32.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.084 4.084 4 C -0.088 4.088 5 C -0.229 4.229 6 C -0.193 4.193 7 C 0.377 3.623 8 O -0.464 6.464 9 N -0.312 5.312 10 C -0.011 4.011 11 C -0.151 4.151 12 C -0.165 4.165 13 C -0.143 4.143 14 C -0.155 4.155 15 C 0.053 3.947 16 H 0.096 0.904 17 N -0.371 5.371 18 C -0.370 4.370 19 H 0.097 0.903 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.801 3.199 23 H -0.199 1.199 24 H -0.225 1.225 25 H -0.207 1.207 26 C -0.021 4.021 27 N -0.078 5.078 28 N -0.080 5.080 29 H 0.310 0.690 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.170 0.830 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.203 0.797 49 H 0.059 0.941 50 H 0.076 0.924 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -29.210 2.711 -12.891 32.043 hybrid contribution 0.844 -0.751 0.979 1.495 sum -28.366 1.960 -11.912 30.828 Atomic orbital electron populations 1.21761 0.94301 1.02141 1.02643 1.21513 0.96731 0.95334 1.02222 1.20348 0.83767 0.98563 1.05744 1.21676 0.96135 1.04799 0.86179 1.21598 0.90360 1.10251 1.00680 1.21526 0.94340 1.12626 0.90803 1.17386 0.82761 0.76083 0.86026 1.90735 1.87261 1.53133 1.15263 1.47727 1.04625 1.70059 1.08839 1.21877 1.02230 0.99378 0.77604 1.22063 0.98042 0.92664 1.02364 1.21888 0.99850 0.99907 0.94867 1.21583 0.96116 1.00396 0.96186 1.21930 0.98138 0.96328 0.99146 1.20987 0.83152 0.91919 0.98686 0.90350 1.42611 1.11219 1.51809 1.31462 1.19563 0.94907 1.16594 1.05905 0.90308 1.25578 0.99124 1.02857 0.99235 1.69826 1.17097 1.48456 1.26599 0.85233 0.77564 0.79004 0.78085 1.19943 1.22461 1.20653 1.22058 0.84056 1.00119 0.95865 1.73914 1.01938 1.18291 1.13643 1.43567 1.02376 1.51317 1.10789 0.69015 0.91519 0.92694 0.92228 0.91867 0.92749 0.88423 0.87803 0.82954 0.90312 0.89371 0.88791 0.90978 0.91962 0.90478 0.91542 0.93580 0.92286 0.93806 0.79670 0.94101 0.92384 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 71.98 0.71 -0.14 16 2 C -0.12 -0.93 5.92 30.59 0.18 -0.75 16 3 C -0.05 -0.31 5.77 29.85 0.17 -0.13 16 4 C 0.04 0.54 6.48 41.40 0.27 0.81 16 5 C -0.20 -4.59 10.73 22.41 0.24 -4.35 16 6 C -0.03 -0.96 6.05 42.46 0.26 -0.70 16 7 C 0.59 21.15 6.25 86.75 0.54 21.70 16 8 O -0.58 -25.42 16.36 -3.93 -0.06 -25.49 16 9 N -0.58 -20.03 1.69 -828.35 -1.40 -21.44 16 10 C 0.11 3.04 4.88 86.07 0.42 3.46 16 11 C -0.11 -2.56 4.45 30.64 0.14 -2.42 16 12 C -0.13 -3.23 5.49 30.68 0.17 -3.06 16 13 C -0.10 -3.11 5.40 30.74 0.17 -2.95 16 14 C -0.12 -4.30 5.21 30.88 0.16 -4.14 16 15 C 0.16 6.63 2.29 44.96 0.10 6.73 16 16 H 0.08 3.07 3.29 -2.39 -0.01 3.07 16 17 N -0.73 -37.79 5.12 -323.10 -1.66 -39.44 16 18 C -0.24 -13.20 9.88 84.03 0.83 -12.37 16 19 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 21 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 22 Si 0.97 46.48 29.55 68.60 2.03 48.50 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 C 0.11 4.36 5.57 86.61 0.48 4.84 16 27 N -0.24 -4.96 6.78 -48.18 -0.33 -5.29 16 28 N -0.36 -4.64 6.83 -47.93 -0.33 -4.97 16 29 H 0.46 2.01 8.96 -219.99 -1.97 0.03 16 30 H 0.07 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.08 2.31 6.07 -2.38 -0.01 2.29 16 39 H 0.09 2.21 6.71 -2.39 -0.02 2.20 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 1.73 4.72 -2.38 -0.01 1.72 16 42 H 0.06 1.79 5.47 -2.39 -0.01 1.78 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.05 1.50 5.38 -2.39 -0.01 1.49 16 46 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.04 1.70 7.85 -2.39 -0.02 1.68 16 48 H 0.37 20.91 7.80 -92.71 -0.72 20.18 16 49 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 50 H 0.06 2.65 6.77 -2.38 -0.02 2.64 16 51 H 0.04 1.98 8.08 -2.39 -0.02 1.96 16 Total: -1.00 -74.49 385.37 2.11 -72.38 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: -1.73 Total: 33.13 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.31 Total: 2.62 kcal Atomic # 7 Polarization: -127.72 SS G_CDS: -3.43 Total: -131.15 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.06 Total: -25.49 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -74.49 2.11 -72.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088356920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.853 kcal (2) G-P(sol) polarization free energy of solvation -74.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds