Wall clock time and date at job start Tue Mar 31 2020 19:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47012 * 2 1 4 4 C 1.50704 * 109.46924 * 119.99676 * 2 1 3 5 5 C 1.35362 * 126.38478 * 145.00026 * 4 2 1 6 6 C 1.41500 * 105.50212 * 179.97438 * 5 4 2 7 7 C 1.47707 * 126.51590 * 179.97438 * 6 5 4 8 8 O 1.21574 * 120.00631 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00213 * 179.97438 * 7 6 5 10 10 C 1.46992 * 120.37717 * 359.93114 * 9 7 6 11 11 C 1.52342 * 109.13707 * 291.65490 * 10 9 7 12 12 C 1.53798 * 109.16081 * 287.28201 * 11 10 9 13 13 C 1.52451 * 109.40046 * 77.83145 * 12 11 10 14 14 C 1.53944 * 110.73052 * 246.27329 * 13 12 11 15 15 C 1.52879 * 109.73657 * 44.36748 * 14 13 12 16 16 H 1.08996 * 109.48381 * 312.92474 * 15 14 13 17 17 N 1.46501 * 109.49078 * 192.87176 * 15 14 13 18 18 C 1.36931 * 120.00315 * 155.08691 * 17 15 14 19 19 H 1.07997 * 120.00001 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00005 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00091 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99974 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46960 * 89.99814 * 22 20 18 24 24 H 1.48493 * 109.46985 * 209.99505 * 22 20 18 25 25 H 1.48496 * 109.47382 * 329.99956 * 22 20 18 26 26 C 1.45335 * 120.37077 * 179.97438 * 9 7 6 27 27 N 1.31801 * 106.96338 * 0.23907 * 6 5 4 28 28 N 1.28470 * 110.07525 * 359.59339 * 27 6 5 29 29 H 0.97003 * 124.88119 * 180.12853 * 28 27 6 30 30 H 1.08997 * 109.47320 * 300.00456 * 1 2 3 31 31 H 1.09001 * 109.46856 * 60.00137 * 1 2 3 32 32 H 1.08994 * 109.46945 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47320 * 239.99544 * 2 1 3 34 34 H 1.09001 * 109.47198 * 299.99654 * 3 2 1 35 35 H 1.09001 * 109.47410 * 60.00135 * 3 2 1 36 36 H 1.09002 * 109.47058 * 179.97438 * 3 2 1 37 37 H 1.08005 * 127.24647 * 359.95744 * 5 4 2 38 38 H 1.08998 * 109.53043 * 171.75470 * 10 9 7 39 39 H 1.09001 * 109.50311 * 51.54555 * 10 9 7 40 40 H 1.08999 * 109.52290 * 167.37294 * 11 10 9 41 41 H 1.09009 * 109.52269 * 47.18657 * 11 10 9 42 42 H 1.09001 * 109.48487 * 317.85300 * 12 11 10 43 43 H 1.09003 * 109.48195 * 197.80722 * 12 11 10 44 44 H 1.09001 * 109.22502 * 125.94790 * 13 12 11 45 45 H 1.09005 * 109.22185 * 6.59389 * 13 12 11 46 46 H 1.09000 * 109.42964 * 284.28275 * 14 13 12 47 47 H 1.09004 * 109.38374 * 164.41943 * 14 13 12 48 48 H 0.97005 * 119.99634 * 335.08751 * 17 15 14 49 49 H 0.97003 * 120.00286 * 180.02562 * 21 20 18 50 50 H 1.09002 * 109.67658 * 16.90237 * 26 9 7 51 51 H 1.08995 * 109.67442 * 256.40037 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 3.1416 -1.4814 1.3160 6 6 3.1930 -1.9224 2.6596 7 6 4.2222 -2.7959 3.2592 8 8 5.1411 -3.2085 2.5785 9 7 4.1427 -3.1356 4.5610 10 6 3.0362 -2.6403 5.3923 11 6 3.1878 -1.1362 5.5811 12 6 4.3553 -0.8635 6.5444 13 6 5.6752 -1.0246 5.7988 14 6 6.4653 -2.2284 6.3434 15 6 5.5261 -3.4199 6.5317 16 1 4.6235 -3.0933 7.0481 17 7 6.1980 -4.4512 7.3262 18 6 5.4585 -5.3479 8.0501 19 1 4.3800 -5.2947 8.0357 20 6 6.0953 -6.3247 8.8033 21 7 7.4097 -6.3893 8.8212 22 14 5.0865 -7.5476 9.7915 23 1 4.7916 -8.7376 8.9535 24 1 5.8533 -7.9656 10.9925 25 1 3.8128 -6.9117 10.2139 26 6 5.1507 -3.9950 5.1591 27 7 2.1448 -1.4102 3.2728 28 7 1.4601 -0.6958 2.4535 29 1 0.6466 -0.2183 2.6798 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 3.8401 -1.7118 0.5252 38 1 3.0611 -3.1337 6.3638 39 1 2.0875 -2.8518 4.8989 40 1 2.2678 -0.7269 5.9985 41 1 3.3925 -0.6671 4.6186 42 1 4.3166 -1.5716 7.3722 43 1 4.2778 0.1527 6.9310 44 1 6.2699 -0.1195 5.9221 45 1 5.4723 -1.1783 4.7389 46 1 6.9130 -1.9647 7.3016 47 1 7.2515 -2.4947 5.6369 48 1 7.1668 -4.4988 7.3393 49 1 7.8547 -7.0721 9.3472 50 1 6.0332 -4.0253 4.5200 51 1 4.7501 -5.0014 5.2797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088387442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:14 Heat of formation + Delta-G solvation = 59.780237 kcal Electronic energy + Delta-G solvation = -30517.499957 eV Core-core repulsion = 26647.190246 eV Total energy + Delta-G solvation = -3870.309712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.91718 -39.93466 -37.41654 -36.12570 -34.76568 -33.67881 -32.35924 -31.73957 -30.05730 -29.71829 -27.70483 -27.15422 -26.10285 -24.43890 -23.34375 -22.79040 -21.89970 -21.33858 -21.07041 -19.07926 -18.35422 -17.80862 -17.14407 -16.43209 -16.05080 -15.80584 -15.50148 -15.15001 -14.52640 -14.38943 -14.10693 -13.97976 -13.80653 -13.66262 -13.47103 -13.37895 -13.08950 -12.75361 -12.74270 -12.35827 -12.27980 -11.81135 -11.71570 -11.59457 -11.40720 -11.36614 -11.19937 -10.86044 -10.76289 -10.67582 -10.49087 -10.34716 -10.17202 -10.11764 -9.80690 -9.68420 -9.57779 -9.37268 -9.00272 -8.89003 -8.08066 -6.94600 -5.75568 -3.04806 1.58946 2.01292 2.68916 3.37667 3.45045 3.49733 3.51187 3.61274 4.13380 4.30131 4.44681 4.59403 4.60380 4.90669 4.99833 5.06559 5.09634 5.21349 5.22717 5.28217 5.32512 5.46171 5.50775 5.54554 5.56221 5.59485 5.65335 5.75527 5.76063 5.83334 5.85679 5.95628 6.03901 6.08240 6.14019 6.22350 6.30945 6.35324 6.42294 6.46640 6.57989 6.68438 6.76653 6.81470 6.89378 6.94415 7.19101 7.69802 7.71812 7.84141 8.42366 8.51476 9.53838 10.11183 10.46052 11.46783 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021543 B = 0.002809 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.422901 B = 9966.522695 C =10161.067725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.026 4.026 3 C -0.146 4.146 4 C 0.017 3.983 5 C -0.176 4.176 6 C -0.005 4.005 7 C 0.593 3.407 8 O -0.541 6.541 9 N -0.582 5.582 10 C 0.112 3.888 11 C -0.124 4.124 12 C -0.131 4.131 13 C -0.112 4.112 14 C -0.123 4.123 15 C 0.159 3.841 16 H 0.067 0.933 17 N -0.720 5.720 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.088 3.912 27 N -0.244 5.244 28 N -0.385 5.385 29 H 0.440 0.560 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.159 0.841 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.081 0.919 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.113 18.011 -16.325 28.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.046 4.046 3 C -0.204 4.204 4 C -0.109 4.109 5 C -0.204 4.204 6 C -0.165 4.165 7 C 0.378 3.622 8 O -0.417 6.417 9 N -0.314 5.314 10 C -0.011 4.011 11 C -0.162 4.162 12 C -0.168 4.168 13 C -0.151 4.151 14 C -0.161 4.161 15 C 0.048 3.952 16 H 0.084 0.916 17 N -0.360 5.360 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.036 4.036 27 N -0.079 5.079 28 N -0.099 5.099 29 H 0.284 0.716 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.177 0.823 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.099 0.901 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.198 17.656 -15.507 27.985 hybrid contribution -0.263 -0.562 -0.056 0.623 sum -15.461 17.094 -15.563 27.811 Atomic orbital electron populations 1.21897 0.94300 1.02491 1.02385 1.19751 0.95738 0.95794 0.93305 1.21871 1.02018 0.94427 1.02077 1.21301 0.96836 1.03812 0.88925 1.21487 0.99426 1.02401 0.97102 1.22008 0.96822 1.04083 0.93578 1.16919 0.83731 0.79661 0.81856 1.90774 1.34236 1.55489 1.61217 1.47761 1.26644 1.48573 1.08401 1.21702 0.89044 0.94461 0.95902 1.22129 0.98012 0.96230 0.99861 1.21913 0.94742 1.01122 0.99036 1.21631 0.95891 0.97545 1.00003 1.22004 0.98265 0.94979 1.00845 1.20921 0.95823 0.88581 0.89868 0.91595 1.42422 1.06157 1.34035 1.53375 1.19207 0.90575 1.07048 1.20330 0.91205 1.24747 0.95569 0.99558 1.00905 1.69664 1.06647 1.36469 1.45025 0.86217 0.78985 0.81557 0.79581 1.21723 1.21813 1.20768 1.22663 0.90918 0.93410 0.96653 1.74041 1.05896 1.08603 1.19404 1.43433 1.22666 1.37394 1.06423 0.71567 0.92901 0.91338 0.91983 0.88467 0.91747 0.92713 0.91813 0.82340 0.89388 0.90634 0.91725 0.90845 0.90450 0.92942 0.93258 0.92364 0.91787 0.92443 0.78119 0.93477 0.90105 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 8.95 37.16 0.33 -0.28 16 2 C -0.03 -0.14 3.32 -91.77 -0.30 -0.45 16 3 C -0.15 -0.72 9.17 37.15 0.34 -0.38 16 4 C 0.02 0.15 5.92 -82.21 -0.49 -0.34 16 5 C -0.18 -2.10 10.73 -39.37 -0.42 -2.53 16 6 C 0.00 -0.06 6.04 -82.77 -0.50 -0.56 16 7 C 0.59 10.35 6.26 -12.39 -0.08 10.27 16 8 O -0.54 -11.13 16.36 5.30 0.09 -11.04 16 9 N -0.58 -9.82 1.69 -175.48 -0.30 -10.12 16 10 C 0.11 1.60 4.88 -4.11 -0.02 1.58 16 11 C -0.12 -1.57 4.45 -26.65 -0.12 -1.69 16 12 C -0.13 -1.81 5.49 -26.60 -0.15 -1.95 16 13 C -0.11 -1.72 5.40 -26.52 -0.14 -1.87 16 14 C -0.12 -2.20 5.22 -26.30 -0.14 -2.33 16 15 C 0.16 3.16 2.29 -67.74 -0.16 3.01 16 16 H 0.07 1.29 3.29 -51.93 -0.17 1.12 16 17 N -0.72 -17.94 5.12 -53.25 -0.27 -18.21 16 18 C -0.24 -6.56 9.88 -15.06 -0.15 -6.71 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 22 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.09 1.74 5.61 -4.42 -0.02 1.72 16 27 N -0.24 -2.84 6.80 33.42 0.23 -2.61 16 28 N -0.39 -3.23 6.64 33.50 0.22 -3.01 16 29 H 0.44 2.24 8.14 -190.44 -1.55 0.69 16 30 H 0.05 0.16 7.43 -51.93 -0.39 -0.22 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 38 H 0.09 1.34 6.07 -51.93 -0.31 1.02 16 39 H 0.08 1.02 6.70 -51.93 -0.35 0.67 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.99 4.74 -51.92 -0.25 0.74 16 42 H 0.08 1.19 5.47 -51.93 -0.28 0.90 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.96 5.38 -51.93 -0.28 0.68 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 48 H 0.39 10.33 7.80 -40.82 -0.32 10.01 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.08 1.72 6.79 -51.93 -0.35 1.36 16 51 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -32.68 383.03 -9.94 -42.62 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -9.28 Total: 9.59 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.11 Total: -2.94 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.61 Total: -61.32 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.68 -9.94 -42.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088387442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.403 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds