Wall clock time and date at job start Tue Mar 31 2020 19:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47012 * 2 1 4 4 C 1.50704 * 109.46924 * 119.99676 * 2 1 3 5 5 C 1.35362 * 126.38478 * 145.00026 * 4 2 1 6 6 C 1.41500 * 105.50212 * 179.97438 * 5 4 2 7 7 C 1.47707 * 126.51590 * 179.97438 * 6 5 4 8 8 O 1.21574 * 120.00631 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00213 * 179.97438 * 7 6 5 10 10 C 1.46992 * 120.37717 * 359.93114 * 9 7 6 11 11 C 1.52342 * 109.13707 * 291.65490 * 10 9 7 12 12 C 1.53798 * 109.16081 * 287.28201 * 11 10 9 13 13 C 1.52451 * 109.40046 * 77.83145 * 12 11 10 14 14 C 1.53944 * 110.73052 * 246.27329 * 13 12 11 15 15 C 1.52879 * 109.73657 * 44.36748 * 14 13 12 16 16 H 1.08996 * 109.48381 * 312.92474 * 15 14 13 17 17 N 1.46501 * 109.49078 * 192.87176 * 15 14 13 18 18 C 1.36931 * 120.00315 * 155.08691 * 17 15 14 19 19 H 1.07997 * 120.00001 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00005 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00091 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99974 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46960 * 89.99814 * 22 20 18 24 24 H 1.48493 * 109.46985 * 209.99505 * 22 20 18 25 25 H 1.48496 * 109.47382 * 329.99956 * 22 20 18 26 26 C 1.45335 * 120.37077 * 179.97438 * 9 7 6 27 27 N 1.31801 * 106.96338 * 0.23907 * 6 5 4 28 28 N 1.28470 * 110.07525 * 359.59339 * 27 6 5 29 29 H 0.97003 * 124.88119 * 180.12853 * 28 27 6 30 30 H 1.08997 * 109.47320 * 300.00456 * 1 2 3 31 31 H 1.09001 * 109.46856 * 60.00137 * 1 2 3 32 32 H 1.08994 * 109.46945 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47320 * 239.99544 * 2 1 3 34 34 H 1.09001 * 109.47198 * 299.99654 * 3 2 1 35 35 H 1.09001 * 109.47410 * 60.00135 * 3 2 1 36 36 H 1.09002 * 109.47058 * 179.97438 * 3 2 1 37 37 H 1.08005 * 127.24647 * 359.95744 * 5 4 2 38 38 H 1.08998 * 109.53043 * 171.75470 * 10 9 7 39 39 H 1.09001 * 109.50311 * 51.54555 * 10 9 7 40 40 H 1.08999 * 109.52290 * 167.37294 * 11 10 9 41 41 H 1.09009 * 109.52269 * 47.18657 * 11 10 9 42 42 H 1.09001 * 109.48487 * 317.85300 * 12 11 10 43 43 H 1.09003 * 109.48195 * 197.80722 * 12 11 10 44 44 H 1.09001 * 109.22502 * 125.94790 * 13 12 11 45 45 H 1.09005 * 109.22185 * 6.59389 * 13 12 11 46 46 H 1.09000 * 109.42964 * 284.28275 * 14 13 12 47 47 H 1.09004 * 109.38374 * 164.41943 * 14 13 12 48 48 H 0.97005 * 119.99634 * 335.08751 * 17 15 14 49 49 H 0.97003 * 120.00286 * 180.02562 * 21 20 18 50 50 H 1.09002 * 109.67658 * 16.90237 * 26 9 7 51 51 H 1.08995 * 109.67442 * 256.40037 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 3.1416 -1.4814 1.3160 6 6 3.1930 -1.9224 2.6596 7 6 4.2222 -2.7959 3.2592 8 8 5.1411 -3.2085 2.5785 9 7 4.1427 -3.1356 4.5610 10 6 3.0362 -2.6403 5.3923 11 6 3.1878 -1.1362 5.5811 12 6 4.3553 -0.8635 6.5444 13 6 5.6752 -1.0246 5.7988 14 6 6.4653 -2.2284 6.3434 15 6 5.5261 -3.4199 6.5317 16 1 4.6235 -3.0933 7.0481 17 7 6.1980 -4.4512 7.3262 18 6 5.4585 -5.3479 8.0501 19 1 4.3800 -5.2947 8.0357 20 6 6.0953 -6.3247 8.8033 21 7 7.4097 -6.3893 8.8212 22 14 5.0865 -7.5476 9.7915 23 1 4.7916 -8.7376 8.9535 24 1 5.8533 -7.9656 10.9925 25 1 3.8128 -6.9117 10.2139 26 6 5.1507 -3.9950 5.1591 27 7 2.1448 -1.4102 3.2728 28 7 1.4601 -0.6958 2.4535 29 1 0.6466 -0.2183 2.6798 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 3.8401 -1.7118 0.5252 38 1 3.0611 -3.1337 6.3638 39 1 2.0875 -2.8518 4.8989 40 1 2.2678 -0.7269 5.9985 41 1 3.3925 -0.6671 4.6186 42 1 4.3166 -1.5716 7.3722 43 1 4.2778 0.1527 6.9310 44 1 6.2699 -0.1195 5.9221 45 1 5.4723 -1.1783 4.7389 46 1 6.9130 -1.9647 7.3016 47 1 7.2515 -2.4947 5.6369 48 1 7.1668 -4.4988 7.3393 49 1 7.8547 -7.0721 9.3472 50 1 6.0332 -4.0253 4.5200 51 1 4.7501 -5.0014 5.2797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088387442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:12 Heat of formation + Delta-G solvation = 39.850873 kcal Electronic energy + Delta-G solvation = -30518.364160 eV Core-core repulsion = 26647.190246 eV Total energy + Delta-G solvation = -3871.173914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.79881 -41.30670 -38.87601 -36.76420 -36.33337 -35.07719 -34.04257 -32.79011 -31.61786 -30.70507 -28.74673 -28.00311 -27.48593 -26.02470 -24.69431 -23.82755 -22.97536 -22.74806 -21.84382 -20.48583 -19.59455 -19.19501 -18.64221 -17.56400 -17.42368 -16.99931 -16.68649 -16.29449 -15.74180 -15.69384 -15.35436 -15.10992 -15.04212 -14.98785 -14.60349 -14.50644 -14.19714 -13.95193 -13.81711 -13.69297 -13.05353 -13.02355 -12.99531 -12.78257 -12.65625 -12.37970 -12.27271 -12.17725 -12.11622 -12.01532 -11.88341 -11.76889 -11.54678 -11.48222 -11.41042 -11.20261 -11.15812 -10.84760 -10.33963 -9.81792 -9.54769 -8.99255 -7.93104 -5.22885 0.54443 1.14203 1.47704 1.49817 1.57705 1.82933 2.19541 2.36648 2.57545 3.29095 3.40161 3.60473 3.75481 3.81845 3.91269 4.05034 4.11892 4.16492 4.22553 4.25153 4.35047 4.40005 4.45523 4.55455 4.60644 4.65490 4.73024 4.76539 4.80737 4.86061 4.87101 4.98500 4.98961 5.00189 5.05401 5.18806 5.20762 5.22596 5.29103 5.34058 5.38285 5.40473 5.41331 5.42791 5.48378 5.57476 5.73095 6.13849 6.27617 6.44980 6.87159 7.16628 7.33907 8.07086 8.31743 9.30378 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021543 B = 0.002809 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.422901 B = 9966.522695 C =10161.067725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 C -0.144 4.144 4 C 0.043 3.957 5 C -0.201 4.201 6 C -0.033 4.033 7 C 0.590 3.410 8 O -0.584 6.584 9 N -0.581 5.581 10 C 0.111 3.889 11 C -0.113 4.113 12 C -0.128 4.128 13 C -0.105 4.105 14 C -0.117 4.117 15 C 0.163 3.837 16 H 0.079 0.921 17 N -0.732 5.732 18 C -0.236 4.236 19 H 0.079 0.921 20 C -0.076 4.076 21 N -0.970 5.970 22 Si 0.971 3.029 23 H -0.291 1.291 24 H -0.297 1.297 25 H -0.265 1.265 26 C 0.104 3.896 27 N -0.239 5.239 28 N -0.362 5.362 29 H 0.459 0.541 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.153 0.847 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.045 0.955 46 H 0.059 0.941 47 H 0.043 0.957 48 H 0.372 0.628 49 H 0.250 0.750 50 H 0.058 0.942 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.715 20.641 -16.848 32.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.044 4.044 3 C -0.202 4.202 4 C -0.083 4.083 5 C -0.229 4.229 6 C -0.191 4.191 7 C 0.378 3.622 8 O -0.464 6.464 9 N -0.312 5.312 10 C -0.011 4.011 11 C -0.151 4.151 12 C -0.165 4.165 13 C -0.143 4.143 14 C -0.155 4.155 15 C 0.054 3.946 16 H 0.096 0.904 17 N -0.371 5.371 18 C -0.368 4.368 19 H 0.097 0.903 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.800 3.200 23 H -0.218 1.218 24 H -0.224 1.224 25 H -0.189 1.189 26 C -0.022 4.022 27 N -0.077 5.077 28 N -0.079 5.079 29 H 0.307 0.693 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.171 0.829 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.203 0.797 49 H 0.059 0.941 50 H 0.076 0.924 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.880 20.338 -16.035 32.050 hybrid contribution 0.785 -1.274 -0.017 1.497 sum -18.095 19.064 -16.053 30.799 Atomic orbital electron populations 1.21908 0.92614 1.02561 1.03850 1.19890 0.97026 0.95826 0.91629 1.21864 1.01200 0.93937 1.03212 1.21629 0.95107 1.01865 0.89725 1.21598 1.01039 1.03942 0.96347 1.21518 0.97428 1.05579 0.94608 1.17374 0.83917 0.79462 0.81478 1.90736 1.36221 1.57263 1.62151 1.47731 1.26555 1.48134 1.08785 1.21886 0.88510 0.95699 0.95013 1.22062 0.98832 0.94631 0.99614 1.21892 0.94002 1.02160 0.98460 1.21581 0.96853 0.96635 0.99218 1.21915 0.97876 0.95344 1.00367 1.21064 0.96353 0.88032 0.89180 0.90385 1.42627 1.05613 1.34877 1.54005 1.19599 0.91156 1.06756 1.19285 0.90266 1.25569 0.96591 1.01841 1.02790 1.69831 1.08337 1.37408 1.46467 0.85170 0.78036 0.79086 0.77673 1.21844 1.22366 1.18920 1.22156 0.90903 0.92849 0.96255 1.73913 1.05281 1.08713 1.19799 1.43496 1.22548 1.35923 1.05977 0.69290 0.91548 0.89916 0.92593 0.88078 0.90012 0.92242 0.93148 0.82879 0.90263 0.89347 0.88811 0.91053 0.91926 0.90499 0.91571 0.93580 0.92264 0.93816 0.79680 0.94107 0.92394 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 8.95 71.98 0.64 0.01 16 2 C -0.02 -0.19 3.32 -11.54 -0.04 -0.23 16 3 C -0.14 -0.98 9.17 71.98 0.66 -0.32 16 4 C 0.04 0.64 5.92 41.40 0.25 0.89 16 5 C -0.20 -4.67 10.73 22.41 0.24 -4.43 16 6 C -0.03 -0.91 6.04 42.46 0.26 -0.66 16 7 C 0.59 21.17 6.26 86.75 0.54 21.71 16 8 O -0.58 -25.40 16.36 -3.95 -0.06 -25.47 16 9 N -0.58 -19.98 1.69 -827.36 -1.39 -21.38 16 10 C 0.11 3.03 4.88 86.07 0.42 3.45 16 11 C -0.11 -2.57 4.45 30.65 0.14 -2.44 16 12 C -0.13 -3.24 5.49 30.68 0.17 -3.07 16 13 C -0.10 -3.12 5.40 30.73 0.17 -2.95 16 14 C -0.12 -4.28 5.22 30.87 0.16 -4.12 16 15 C 0.16 6.66 2.29 45.11 0.10 6.77 16 16 H 0.08 3.06 3.29 -2.39 -0.01 3.05 16 17 N -0.73 -37.74 5.12 -322.38 -1.65 -39.40 16 18 C -0.24 -13.08 9.88 84.03 0.83 -12.25 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 20 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 21 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 22 Si 0.97 46.46 29.55 68.60 2.03 48.49 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 24 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 26 C 0.10 4.32 5.61 86.76 0.49 4.81 16 27 N -0.24 -5.02 6.80 -48.18 -0.33 -5.35 16 28 N -0.36 -4.90 6.64 -47.93 -0.32 -5.22 16 29 H 0.46 2.67 8.14 -219.99 -1.79 0.88 16 30 H 0.07 0.11 7.43 -2.39 -0.02 0.09 16 31 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 37 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 38 H 0.08 2.32 6.07 -2.39 -0.01 2.31 16 39 H 0.09 2.22 6.70 -2.39 -0.02 2.21 16 40 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 1.73 4.74 -2.38 -0.01 1.72 16 42 H 0.06 1.80 5.47 -2.39 -0.01 1.79 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.05 1.50 5.38 -2.38 -0.01 1.49 16 46 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.04 1.69 7.87 -2.38 -0.02 1.67 16 48 H 0.37 20.88 7.80 -92.70 -0.72 20.16 16 49 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 50 H 0.06 2.65 6.79 -2.39 -0.02 2.63 16 51 H 0.04 2.01 8.09 -2.39 -0.02 1.99 16 Total: -1.00 -73.91 383.03 2.49 -71.42 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: -1.55 Total: 33.71 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 5.49 Total: 3.26 kcal Atomic # 7 Polarization: -128.00 SS G_CDS: -3.41 Total: -131.41 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.06 Total: -25.47 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -73.91 2.49 -71.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088387442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.273 kcal (2) G-P(sol) polarization free energy of solvation -73.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds