Wall clock time and date at job start Tue Mar 31 2020 19:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46656 * 2 1 4 4 C 1.50697 * 109.47160 * 239.99807 * 2 1 3 5 5 O 1.21280 * 119.99794 * 109.92492 * 4 2 1 6 6 N 1.34776 * 119.99977 * 289.91924 * 4 2 1 7 7 C 1.45323 * 120.36746 * 3.39377 * 6 4 2 8 8 C 1.53444 * 108.41700 * 136.65440 * 7 6 4 9 9 C 1.52877 * 109.38810 * 282.28179 * 8 7 6 10 10 C 1.53956 * 109.73013 * 72.89455 * 9 8 7 11 11 C 1.52442 * 110.72927 * 44.36404 * 10 9 8 12 12 C 1.53806 * 109.40402 * 246.26926 * 11 10 9 13 13 H 1.08993 * 109.52372 * 317.87447 * 12 11 10 14 14 N 1.46500 * 109.52284 * 197.74193 * 12 11 10 15 15 C 1.36936 * 119.99878 * 85.00438 * 14 12 11 16 16 H 1.08006 * 119.99880 * 359.97438 * 15 14 12 17 17 C 1.38814 * 120.00401 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99392 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00476 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47109 * 89.99821 * 19 17 15 21 21 H 1.48502 * 109.47340 * 210.00107 * 19 17 15 22 22 H 1.48500 * 109.47162 * 330.00055 * 19 17 15 23 23 C 1.46965 * 120.36111 * 183.11984 * 6 4 2 24 24 C 1.50698 * 109.46771 * 119.99686 * 2 1 3 25 25 C 1.34676 * 126.58919 * 132.67663 * 24 2 1 26 26 N 1.34124 * 108.01805 * 180.24489 * 25 24 2 27 27 C 1.30498 * 109.25950 * 359.61781 * 26 25 24 28 28 N 1.35041 * 108.70030 * 0.37811 * 27 26 25 29 29 H 0.97002 * 126.40010 * 179.75825 * 28 27 26 30 30 H 1.08996 * 109.47437 * 289.26278 * 1 2 3 31 31 H 1.09002 * 109.47057 * 49.26974 * 1 2 3 32 32 H 1.09002 * 109.46345 * 169.26399 * 1 2 3 33 33 H 1.09006 * 109.47049 * 180.42339 * 3 2 1 34 34 H 1.09004 * 109.47065 * 300.41963 * 3 2 1 35 35 H 1.08995 * 109.47253 * 60.42452 * 3 2 1 36 36 H 1.08996 * 109.67664 * 256.38852 * 7 6 4 37 37 H 1.09003 * 109.67743 * 16.92453 * 7 6 4 38 38 H 1.09000 * 109.48036 * 42.25591 * 8 7 6 39 39 H 1.08999 * 109.48485 * 162.28358 * 8 7 6 40 40 H 1.08997 * 109.42460 * 192.97420 * 9 8 7 41 41 H 1.08998 * 109.42403 * 312.81695 * 9 8 7 42 42 H 1.08994 * 109.22447 * 164.68827 * 10 9 8 43 43 H 1.08998 * 109.22201 * 284.08761 * 10 9 8 44 44 H 1.08998 * 109.48855 * 6.25506 * 11 10 9 45 45 H 1.09009 * 109.47888 * 126.29659 * 11 10 9 46 46 H 0.96998 * 120.00032 * 264.99867 * 14 12 11 47 47 H 0.97002 * 119.99910 * 180.02562 * 18 17 15 48 48 H 1.08996 * 109.53740 * 51.52588 * 23 6 4 49 49 H 1.08997 * 109.52864 * 171.75575 * 23 6 4 50 50 H 1.07997 * 125.98853 * 359.97438 * 25 24 2 51 51 H 1.07998 * 125.65310 * 180.14904 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5720 -0.0815 -2.1159 6 7 1.8821 -2.0447 -1.3467 7 6 1.1720 -2.7959 -0.3252 8 6 0.2438 -3.8010 -1.0198 9 6 -0.9984 -3.0732 -1.5341 10 6 -0.6292 -2.2170 -2.7592 11 6 0.2646 -2.9994 -3.7147 12 6 1.6592 -2.3520 -3.7555 13 1 1.5565 -1.2673 -3.7862 14 7 2.3768 -2.8099 -4.9478 15 6 2.1910 -2.1727 -6.1455 16 1 1.5151 -1.3329 -6.2113 17 6 2.8713 -2.6062 -7.2752 18 7 3.6947 -3.6300 -7.1951 19 14 2.6184 -1.7366 -8.9089 20 1 3.6054 -0.6350 -9.0413 21 1 2.8054 -2.7049 -10.0193 22 1 1.2434 -1.1786 -8.9651 23 6 2.4293 -2.7552 -2.5110 24 6 2.0323 -0.7103 1.2305 25 6 2.9909 -1.6551 1.2770 26 7 3.1379 -2.0346 2.5550 27 6 2.3125 -1.3551 3.3034 28 7 1.6017 -0.5196 2.5158 29 1 0.9142 0.0999 2.8065 30 1 -0.3634 0.3390 0.9701 31 1 -0.3633 0.6706 -0.7788 32 1 -0.3632 -1.0097 -0.1915 33 1 3.1300 1.4426 -0.0076 34 1 1.6704 1.9585 -0.8862 35 1 1.6828 1.9541 0.8937 36 1 1.8867 -3.3289 0.3018 37 1 0.5820 -2.1145 0.2879 38 1 0.7682 -4.2615 -1.8572 39 1 -0.0542 -4.5720 -0.3093 40 1 -1.7555 -3.8043 -1.8175 41 1 -1.3931 -2.4298 -0.7478 42 1 -1.5407 -1.9234 -3.2797 43 1 -0.1020 -1.3230 -2.4265 44 1 0.3520 -4.0296 -3.3696 45 1 -0.1717 -2.9861 -4.7136 46 1 2.9836 -3.5643 -4.8887 47 1 4.1704 -3.9327 -7.9844 48 1 3.4792 -2.4914 -2.6386 49 1 2.3386 -3.8305 -2.3574 50 1 3.5414 -2.0427 0.4325 51 1 2.2117 -1.4483 4.3746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088413538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:34 Heat of formation + Delta-G solvation = 55.896029 kcal Electronic energy + Delta-G solvation = -31895.107602 eV Core-core repulsion = 28024.629458 eV Total energy + Delta-G solvation = -3870.478144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.67606 -40.51247 -37.73548 -35.73180 -34.68485 -33.90418 -32.55560 -31.96138 -29.60194 -29.11246 -28.04568 -27.24993 -26.05944 -24.34980 -23.31554 -22.51741 -21.55310 -21.14578 -20.72349 -19.77283 -18.83427 -18.10104 -17.12876 -16.42663 -15.89963 -15.75773 -15.29060 -14.98372 -14.79097 -14.50363 -14.25355 -13.90519 -13.67228 -13.61956 -13.41676 -13.25126 -13.05792 -12.84263 -12.59528 -12.35224 -12.30121 -12.04084 -11.94412 -11.74807 -11.44049 -11.16480 -10.94195 -10.86972 -10.75049 -10.61283 -10.48266 -10.17906 -10.17141 -10.14324 -10.05427 -9.89127 -9.62617 -9.38358 -8.79564 -8.50182 -8.21387 -6.86317 -5.68027 -2.95784 1.76820 2.56960 2.94780 2.98886 3.16813 3.50181 3.55341 3.56430 4.24699 4.31469 4.56787 4.62050 4.68973 4.77988 4.82359 5.00417 5.11456 5.12825 5.21170 5.33362 5.35515 5.41569 5.45342 5.48467 5.51262 5.60539 5.65262 5.69113 5.79293 5.88310 5.90099 5.95029 5.95971 5.99084 6.06203 6.06683 6.13958 6.22323 6.40890 6.50312 6.53905 6.56306 6.77103 6.81031 7.06243 7.09521 7.26129 7.64089 7.80868 7.83823 8.37063 8.51131 9.61636 10.18403 10.53326 11.54876 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.003608 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.231535 B = 7759.404334 C = 8063.569647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.005 4.005 3 C -0.126 4.126 4 C 0.525 3.475 5 O -0.514 6.514 6 N -0.593 5.593 7 C 0.098 3.902 8 C -0.154 4.154 9 C -0.114 4.114 10 C -0.119 4.119 11 C -0.142 4.142 12 C 0.164 3.836 13 H 0.064 0.936 14 N -0.720 5.720 15 C -0.228 4.228 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.935 5.935 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.293 1.293 22 H -0.283 1.283 23 C 0.111 3.889 24 C -0.015 4.015 25 C -0.009 4.009 26 N -0.489 5.489 27 C 0.182 3.818 28 N -0.563 5.563 29 H 0.417 0.583 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.382 0.618 47 H 0.254 0.746 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.170 0.830 51 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.041 4.890 24.251 26.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.010 4.010 3 C -0.183 4.183 4 C 0.311 3.689 5 O -0.388 6.388 6 N -0.327 5.327 7 C -0.026 4.026 8 C -0.192 4.192 9 C -0.152 4.152 10 C -0.158 4.158 11 C -0.182 4.182 12 C 0.053 3.947 13 H 0.082 0.918 14 N -0.361 5.361 15 C -0.359 4.359 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.584 5.584 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.209 1.209 23 C -0.012 4.012 24 C -0.131 4.131 25 C -0.157 4.157 26 N -0.208 5.208 27 C -0.101 4.101 28 N -0.167 5.167 29 H 0.255 0.745 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.215 0.785 47 H 0.063 0.937 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.187 0.813 51 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.176 4.697 23.875 26.005 hybrid contribution -0.926 0.975 -0.904 1.620 sum -10.102 5.673 22.971 25.728 Atomic orbital electron populations 1.22278 0.92082 1.04467 1.02720 1.19257 0.96837 0.96050 0.88847 1.21697 1.02403 0.92093 1.02147 1.19877 0.79684 0.82054 0.87316 1.90796 1.42038 1.65170 1.40810 1.47707 1.55558 1.06530 1.22870 1.22157 0.94920 0.94896 0.90583 1.22397 0.97106 0.98105 1.01545 1.21754 0.96990 0.98768 0.97673 1.21738 0.99296 0.99066 0.95668 1.22531 0.97933 0.98955 0.98758 1.20588 0.89863 0.98238 0.86025 0.91800 1.42283 1.51683 1.37955 1.04146 1.19202 1.20552 1.10049 0.86141 0.91318 1.24703 0.99769 0.98654 0.97917 1.69660 1.31977 1.27933 1.28809 0.86213 0.77586 0.78577 0.83986 1.21777 1.21903 1.20869 1.21821 0.98534 0.96090 0.84714 1.20755 1.02712 1.04123 0.85461 1.22246 0.99761 0.98628 0.95067 1.70339 1.22449 1.25482 1.02517 1.24977 0.93952 0.92688 0.98518 1.43148 1.32838 1.33873 1.06850 0.74487 0.92206 0.90684 0.89901 0.91487 0.90682 0.92625 0.91232 0.89446 0.89041 0.91495 0.92286 0.92863 0.93274 0.92215 0.92483 0.91770 0.78496 0.93650 0.90700 0.90203 0.81312 0.77618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 7.63 37.16 0.28 -1.07 16 2 C -0.01 -0.05 0.73 -156.81 -0.11 -0.17 16 3 C -0.13 -1.32 7.78 37.16 0.29 -1.03 16 4 C 0.53 7.83 4.32 -10.99 -0.05 7.78 16 5 O -0.51 -10.03 14.61 5.56 0.08 -9.95 16 6 N -0.59 -8.21 0.96 -174.69 -0.17 -8.38 16 7 C 0.10 1.08 3.63 -4.44 -0.02 1.06 16 8 C -0.15 -1.69 5.45 -26.56 -0.14 -1.83 16 9 C -0.11 -1.27 5.35 -26.30 -0.14 -1.41 16 10 C -0.12 -1.70 5.35 -26.52 -0.14 -1.84 16 11 C -0.14 -2.51 5.09 -26.60 -0.14 -2.64 16 12 C 0.16 3.34 2.38 -68.12 -0.16 3.17 16 13 H 0.06 1.48 6.03 -51.93 -0.31 1.16 16 14 N -0.72 -18.38 5.13 -53.61 -0.27 -18.66 16 15 C -0.23 -6.52 9.88 -15.06 -0.15 -6.67 16 16 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 17 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 19 Si 0.90 23.12 29.55 -169.99 -5.02 18.10 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 C 0.11 1.89 4.61 -4.40 -0.02 1.87 16 24 C -0.02 -0.15 3.93 -81.60 -0.32 -0.47 16 25 C -0.01 -0.11 7.95 -17.81 -0.14 -0.25 16 26 N -0.49 -5.74 11.25 -14.67 -0.17 -5.90 16 27 C 0.18 1.40 13.04 -90.38 -1.18 0.22 16 28 N -0.56 -3.79 5.96 -10.30 -0.06 -3.85 16 29 H 0.42 1.47 8.48 -40.82 -0.35 1.13 16 30 H 0.06 0.34 7.46 -51.93 -0.39 -0.04 16 31 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 32 H 0.08 0.74 2.81 -51.93 -0.15 0.60 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.86 8.00 -51.93 -0.42 0.44 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.79 6.28 -51.93 -0.33 0.47 16 37 H 0.09 0.86 3.14 -51.93 -0.16 0.70 16 38 H 0.09 1.17 3.35 -51.93 -0.17 1.00 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.50 6.29 -51.93 -0.33 0.18 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.89 4.50 -51.93 -0.23 0.66 16 44 H 0.06 0.95 5.47 -51.93 -0.28 0.67 16 45 H 0.06 1.32 8.09 -51.92 -0.42 0.90 16 46 H 0.38 10.22 7.79 -40.82 -0.32 9.90 16 47 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.07 1.44 8.12 -51.93 -0.42 1.02 16 49 H 0.08 1.23 6.06 -51.93 -0.31 0.92 16 50 H 0.17 2.31 6.75 -52.49 -0.35 1.95 16 51 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -34.57 366.07 -9.05 -43.62 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -7.45 Total: 11.30 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -2.24 Total: -3.81 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: 0.06 Total: -64.77 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.57 -9.05 -43.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088413538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.515 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds