Wall clock time and date at job start Tue Mar 31 2020 19:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46656 * 2 1 4 4 C 1.50697 * 109.47160 * 239.99807 * 2 1 3 5 5 O 1.21280 * 119.99794 * 109.92492 * 4 2 1 6 6 N 1.34776 * 119.99977 * 289.91924 * 4 2 1 7 7 C 1.45323 * 120.36746 * 3.39377 * 6 4 2 8 8 C 1.53444 * 108.41700 * 136.65440 * 7 6 4 9 9 C 1.52877 * 109.38810 * 282.28179 * 8 7 6 10 10 C 1.53956 * 109.73013 * 72.89455 * 9 8 7 11 11 C 1.52442 * 110.72927 * 44.36404 * 10 9 8 12 12 C 1.53806 * 109.40402 * 246.26926 * 11 10 9 13 13 H 1.08993 * 109.52372 * 317.87447 * 12 11 10 14 14 N 1.46500 * 109.52284 * 197.74193 * 12 11 10 15 15 C 1.36936 * 119.99878 * 85.00438 * 14 12 11 16 16 H 1.08006 * 119.99880 * 359.97438 * 15 14 12 17 17 C 1.38814 * 120.00401 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99392 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00476 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47109 * 89.99821 * 19 17 15 21 21 H 1.48502 * 109.47340 * 210.00107 * 19 17 15 22 22 H 1.48500 * 109.47162 * 330.00055 * 19 17 15 23 23 C 1.46965 * 120.36111 * 183.11984 * 6 4 2 24 24 C 1.50698 * 109.46771 * 119.99686 * 2 1 3 25 25 C 1.34676 * 126.58919 * 132.67663 * 24 2 1 26 26 N 1.34124 * 108.01805 * 180.24489 * 25 24 2 27 27 C 1.30498 * 109.25950 * 359.61781 * 26 25 24 28 28 N 1.35041 * 108.70030 * 0.37811 * 27 26 25 29 29 H 0.97002 * 126.40010 * 179.75825 * 28 27 26 30 30 H 1.08996 * 109.47437 * 289.26278 * 1 2 3 31 31 H 1.09002 * 109.47057 * 49.26974 * 1 2 3 32 32 H 1.09002 * 109.46345 * 169.26399 * 1 2 3 33 33 H 1.09006 * 109.47049 * 180.42339 * 3 2 1 34 34 H 1.09004 * 109.47065 * 300.41963 * 3 2 1 35 35 H 1.08995 * 109.47253 * 60.42452 * 3 2 1 36 36 H 1.08996 * 109.67664 * 256.38852 * 7 6 4 37 37 H 1.09003 * 109.67743 * 16.92453 * 7 6 4 38 38 H 1.09000 * 109.48036 * 42.25591 * 8 7 6 39 39 H 1.08999 * 109.48485 * 162.28358 * 8 7 6 40 40 H 1.08997 * 109.42460 * 192.97420 * 9 8 7 41 41 H 1.08998 * 109.42403 * 312.81695 * 9 8 7 42 42 H 1.08994 * 109.22447 * 164.68827 * 10 9 8 43 43 H 1.08998 * 109.22201 * 284.08761 * 10 9 8 44 44 H 1.08998 * 109.48855 * 6.25506 * 11 10 9 45 45 H 1.09009 * 109.47888 * 126.29659 * 11 10 9 46 46 H 0.96998 * 120.00032 * 264.99867 * 14 12 11 47 47 H 0.97002 * 119.99910 * 180.02562 * 18 17 15 48 48 H 1.08996 * 109.53740 * 51.52588 * 23 6 4 49 49 H 1.08997 * 109.52864 * 171.75575 * 23 6 4 50 50 H 1.07997 * 125.98853 * 359.97438 * 25 24 2 51 51 H 1.07998 * 125.65310 * 180.14904 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5720 -0.0815 -2.1159 6 7 1.8821 -2.0447 -1.3467 7 6 1.1720 -2.7959 -0.3252 8 6 0.2438 -3.8010 -1.0198 9 6 -0.9984 -3.0732 -1.5341 10 6 -0.6292 -2.2170 -2.7592 11 6 0.2646 -2.9994 -3.7147 12 6 1.6592 -2.3520 -3.7555 13 1 1.5565 -1.2673 -3.7862 14 7 2.3768 -2.8099 -4.9478 15 6 2.1910 -2.1727 -6.1455 16 1 1.5151 -1.3329 -6.2113 17 6 2.8713 -2.6062 -7.2752 18 7 3.6947 -3.6300 -7.1951 19 14 2.6184 -1.7366 -8.9089 20 1 3.6054 -0.6350 -9.0413 21 1 2.8054 -2.7049 -10.0193 22 1 1.2434 -1.1786 -8.9651 23 6 2.4293 -2.7552 -2.5110 24 6 2.0323 -0.7103 1.2305 25 6 2.9909 -1.6551 1.2770 26 7 3.1379 -2.0346 2.5550 27 6 2.3125 -1.3551 3.3034 28 7 1.6017 -0.5196 2.5158 29 1 0.9142 0.0999 2.8065 30 1 -0.3634 0.3390 0.9701 31 1 -0.3633 0.6706 -0.7788 32 1 -0.3632 -1.0097 -0.1915 33 1 3.1300 1.4426 -0.0076 34 1 1.6704 1.9585 -0.8862 35 1 1.6828 1.9541 0.8937 36 1 1.8867 -3.3289 0.3018 37 1 0.5820 -2.1145 0.2879 38 1 0.7682 -4.2615 -1.8572 39 1 -0.0542 -4.5720 -0.3093 40 1 -1.7555 -3.8043 -1.8175 41 1 -1.3931 -2.4298 -0.7478 42 1 -1.5407 -1.9234 -3.2797 43 1 -0.1020 -1.3230 -2.4265 44 1 0.3520 -4.0296 -3.3696 45 1 -0.1717 -2.9861 -4.7136 46 1 2.9836 -3.5643 -4.8887 47 1 4.1704 -3.9327 -7.9844 48 1 3.4792 -2.4914 -2.6386 49 1 2.3386 -3.8305 -2.3574 50 1 3.5414 -2.0427 0.4325 51 1 2.2117 -1.4483 4.3746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088413538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:32 Heat of formation + Delta-G solvation = 33.173494 kcal Electronic energy + Delta-G solvation = -31896.092925 eV Core-core repulsion = 28024.629458 eV Total energy + Delta-G solvation = -3871.463467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.46016 -41.62973 -39.01347 -37.00644 -36.11022 -35.13091 -33.91846 -33.18506 -31.28261 -29.88653 -29.28702 -28.25845 -27.23180 -25.93652 -24.81380 -23.46318 -22.53950 -22.12865 -21.96876 -20.82825 -19.88772 -19.29489 -18.98639 -17.38752 -17.22803 -17.10501 -16.30173 -16.15670 -16.00592 -15.69896 -15.31833 -15.20067 -15.03848 -14.82047 -14.78367 -14.41556 -14.23467 -13.88957 -13.72373 -13.50236 -13.28642 -13.09310 -13.02219 -12.97824 -12.83294 -12.68887 -12.48712 -12.35103 -12.17402 -12.04602 -11.91837 -11.73644 -11.58897 -11.42335 -11.17891 -10.96922 -10.92114 -10.88394 -10.58528 -9.51673 -9.26344 -8.98355 -7.95180 -5.23026 1.05738 1.42604 1.45779 1.52325 1.53508 1.93272 2.22250 2.30106 2.55805 3.31084 3.37297 3.55448 3.70546 3.86734 3.89446 3.98848 4.03095 4.05231 4.13881 4.15809 4.19252 4.44447 4.45746 4.49219 4.57592 4.59674 4.61487 4.67698 4.68195 4.75423 4.80441 4.82987 4.87468 4.95013 5.05159 5.12344 5.13008 5.18533 5.22326 5.23097 5.40012 5.45041 5.46520 5.50542 5.59673 5.69670 5.73638 6.27525 6.48143 6.61708 7.14894 7.19215 7.32830 8.07855 8.32336 9.28225 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.003608 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.231535 B = 7759.404334 C = 8063.569647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.006 3.994 3 C -0.124 4.124 4 C 0.518 3.482 5 O -0.573 6.573 6 N -0.585 5.585 7 C 0.100 3.900 8 C -0.152 4.152 9 C -0.107 4.107 10 C -0.115 4.115 11 C -0.129 4.129 12 C 0.167 3.833 13 H 0.033 0.967 14 N -0.733 5.733 15 C -0.233 4.233 16 H 0.063 0.937 17 C -0.074 4.074 18 N -0.968 5.968 19 Si 0.969 3.031 20 H -0.290 1.290 21 H -0.290 1.290 22 H -0.271 1.271 23 C 0.123 3.877 24 C -0.010 4.010 25 C -0.033 4.033 26 N -0.533 5.533 27 C 0.206 3.794 28 N -0.543 5.543 29 H 0.438 0.562 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.030 0.970 46 H 0.372 0.628 47 H 0.251 0.749 48 H 0.041 0.959 49 H 0.098 0.902 50 H 0.139 0.861 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.062 5.442 27.924 31.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.001 3.999 3 C -0.182 4.182 4 C 0.306 3.694 5 O -0.451 6.451 6 N -0.316 5.316 7 C -0.021 4.021 8 C -0.190 4.190 9 C -0.144 4.144 10 C -0.153 4.153 11 C -0.169 4.169 12 C 0.057 3.943 13 H 0.051 0.949 14 N -0.373 5.373 15 C -0.365 4.365 16 H 0.081 0.919 17 C -0.266 4.266 18 N -0.619 5.619 19 Si 0.798 3.202 20 H -0.218 1.218 21 H -0.216 1.216 22 H -0.196 1.196 23 C 0.000 4.000 24 C -0.127 4.127 25 C -0.181 4.181 26 N -0.252 5.252 27 C -0.078 4.078 28 N -0.148 5.148 29 H 0.280 0.720 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.127 0.873 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.204 0.796 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.116 0.884 50 H 0.156 0.844 51 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -12.269 5.266 27.615 30.673 hybrid contribution 0.054 0.830 -1.925 2.097 sum -12.215 6.096 25.690 29.092 Atomic orbital electron populations 1.22314 0.89575 1.04466 1.04980 1.19125 0.98563 0.95311 0.86918 1.21699 1.00887 0.92274 1.03311 1.20773 0.78497 0.82058 0.88118 1.90765 1.44654 1.66417 1.43295 1.47673 1.55232 1.06544 1.22151 1.22346 0.94879 0.95116 0.89790 1.22385 0.96710 0.98512 1.01371 1.21731 0.97212 0.98870 0.96564 1.21666 0.98352 0.98814 0.96471 1.22314 0.96273 1.00140 0.98193 1.20670 0.91466 0.96457 0.85661 0.94935 1.42446 1.52228 1.37623 1.05037 1.19459 1.19853 1.09662 0.87503 0.91861 1.25486 1.00061 0.99760 1.01284 1.69807 1.33149 1.29465 1.29446 0.85198 0.77844 0.77350 0.79767 1.21782 1.21619 1.19630 1.21417 0.96329 0.97309 0.84977 1.20341 1.02449 1.03514 0.86387 1.21927 1.00865 1.00262 0.95020 1.70292 1.24736 1.27668 1.02527 1.25791 0.91670 0.90542 0.99817 1.43003 1.32889 1.33830 1.05123 0.72016 0.88097 0.91236 0.90051 0.93934 0.92099 0.88814 0.91227 0.87268 0.91276 0.88599 0.91066 0.89984 0.92815 0.93087 0.91143 0.95106 0.79601 0.94012 0.94033 0.88392 0.84360 0.73280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 7.63 71.98 0.55 -1.57 16 2 C 0.01 0.11 0.73 -53.67 -0.04 0.07 16 3 C -0.12 -2.50 7.78 71.98 0.56 -1.94 16 4 C 0.52 16.02 4.32 87.66 0.38 16.40 16 5 O -0.57 -24.20 14.61 -3.03 -0.04 -24.25 16 6 N -0.58 -16.63 0.96 -824.99 -0.79 -17.42 16 7 C 0.10 2.05 3.63 86.75 0.32 2.37 16 8 C -0.15 -2.93 5.45 30.70 0.17 -2.76 16 9 C -0.11 -2.00 5.35 30.88 0.17 -1.83 16 10 C -0.11 -3.16 5.35 30.73 0.16 -3.00 16 11 C -0.13 -4.72 5.09 30.68 0.16 -4.56 16 12 C 0.17 7.23 2.38 44.87 0.11 7.34 16 13 H 0.03 1.62 6.03 -2.39 -0.01 1.61 16 14 N -0.73 -39.83 5.13 -323.52 -1.66 -41.48 16 15 C -0.23 -13.94 9.88 84.03 0.83 -13.11 16 16 H 0.06 3.77 7.83 -2.91 -0.02 3.75 16 17 C -0.07 -4.48 5.50 84.86 0.47 -4.01 16 18 N -0.97 -61.62 13.06 21.65 0.28 -61.33 16 19 Si 0.97 48.91 29.55 68.60 2.03 50.93 16 20 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 21 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 22 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 23 C 0.12 4.50 4.61 85.90 0.40 4.89 16 24 C -0.01 -0.18 3.93 40.95 0.16 -0.01 16 25 C -0.03 -0.78 7.95 83.53 0.66 -0.12 16 26 N -0.53 -11.46 11.25 -200.31 -2.25 -13.71 16 27 C 0.21 2.29 13.04 180.26 2.35 4.64 16 28 N -0.54 -4.82 5.96 -186.49 -1.11 -5.93 16 29 H 0.44 0.43 8.48 -92.71 -0.79 -0.35 16 30 H 0.10 0.56 7.46 -2.39 -0.02 0.55 16 31 H 0.07 1.07 8.11 -2.39 -0.02 1.06 16 32 H 0.08 1.13 2.81 -2.39 -0.01 1.12 16 33 H 0.04 1.05 8.14 -2.38 -0.02 1.04 16 34 H 0.06 1.40 8.00 -2.39 -0.02 1.38 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.50 6.28 -2.39 -0.02 1.48 16 37 H 0.11 1.78 3.14 -2.39 -0.01 1.78 16 38 H 0.07 1.67 3.35 -2.39 -0.01 1.67 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.14 6.29 -2.39 -0.02 1.12 16 42 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.51 4.50 -2.39 -0.01 1.49 16 44 H 0.07 2.37 5.47 -2.39 -0.01 2.35 16 45 H 0.03 1.30 8.09 -2.38 -0.02 1.28 16 46 H 0.37 21.24 7.79 -92.71 -0.72 20.52 16 47 H 0.25 15.45 8.31 -92.71 -0.77 14.67 16 48 H 0.04 1.77 8.12 -2.39 -0.02 1.75 16 49 H 0.10 3.17 6.06 -2.39 -0.01 3.16 16 50 H 0.14 4.04 6.75 -2.91 -0.02 4.02 16 51 H 0.25 0.34 8.06 -2.91 -0.02 0.31 16 Total: -1.00 -82.72 366.07 3.32 -79.40 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -0.52 Total: 31.01 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 7.39 Total: 2.79 kcal Atomic # 7 Polarization: -134.35 SS G_CDS: -5.53 Total: -139.89 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.04 Total: -24.25 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.03 Total: 50.93 kcal Total: -82.72 3.32 -79.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088413538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.574 kcal (2) G-P(sol) polarization free energy of solvation -82.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds