Wall clock time and date at job start Tue Mar 31 2020 18:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47588 * 2 1 4 4 C 1.35365 * 126.38548 * 274.71439 * 3 2 1 5 5 C 1.41501 * 105.50023 * 179.89399 * 4 3 2 6 6 C 1.47711 * 126.52009 * 180.09999 * 5 4 3 7 7 O 1.21577 * 119.99567 * 0.29648 * 6 5 4 8 8 N 1.34773 * 120.00256 * 180.29271 * 6 5 4 9 9 C 1.46503 * 120.00052 * 179.97438 * 8 6 5 10 10 H 1.09006 * 110.21134 * 33.07022 * 9 8 6 11 11 C 1.52522 * 110.25406 * 270.98396 * 9 8 6 12 12 C 1.46233 * 114.28033 * 151.61804 * 11 9 8 13 13 N 1.50164 * 107.53475 * 58.40912 * 12 11 9 14 14 C 1.36936 * 120.53641 * 109.56179 * 13 12 11 15 15 H 1.08008 * 119.99623 * 156.70280 * 14 13 12 16 16 C 1.38810 * 120.00276 * 336.70598 * 14 13 12 17 17 N 1.31622 * 119.99619 * 340.42049 * 16 14 13 18 18 Si 1.86797 * 119.99977 * 160.42485 * 16 14 13 19 19 H 1.48496 * 109.47244 * 59.99879 * 18 16 14 20 20 H 1.48500 * 109.47012 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47088 * 299.99491 * 18 16 14 22 22 C 1.43434 * 118.92716 * 289.59304 * 13 12 11 23 23 C 1.54897 * 116.08037 * 91.56090 * 22 13 12 24 24 C 1.53003 * 109.36314 * 198.43566 * 23 22 13 25 25 C 1.53003 * 109.25007 * 78.77953 * 23 22 13 26 26 C 1.50125 * 110.25021 * 155.00002 * 9 8 6 27 27 N 1.31810 * 106.96358 * 0.37082 * 5 4 3 28 28 N 1.28466 * 110.07690 * 359.76619 * 27 5 4 29 29 H 0.96995 * 124.88573 * 179.97438 * 28 27 5 30 30 H 1.09003 * 109.47211 * 300.00077 * 1 2 3 31 31 H 1.09002 * 109.47004 * 60.00081 * 1 2 3 32 32 H 1.09001 * 109.47699 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46910 * 120.00433 * 2 1 3 34 34 H 1.09003 * 109.47211 * 239.99923 * 2 1 3 35 35 H 1.07993 * 127.25172 * 0.02562 * 4 3 2 36 36 H 0.96994 * 120.00165 * 0.02562 * 8 6 5 37 37 H 1.08998 * 108.52567 * 272.86390 * 11 9 8 38 38 H 1.09007 * 108.52100 * 30.37451 * 11 9 8 39 39 H 1.09004 * 109.84451 * 298.89898 * 12 11 9 40 40 H 1.09002 * 109.90141 * 177.95125 * 12 11 9 41 41 H 0.97005 * 119.99456 * 179.97438 * 17 16 14 42 42 H 1.08998 * 108.15888 * 329.84627 * 22 13 12 43 43 H 1.09004 * 107.99817 * 213.15425 * 22 13 12 44 44 H 1.08993 * 109.47737 * 180.68348 * 24 23 22 45 45 H 1.09007 * 109.47087 * 300.68872 * 24 23 22 46 46 H 1.09005 * 109.46656 * 60.68387 * 24 23 22 47 47 H 1.08999 * 109.47015 * 299.38717 * 25 23 22 48 48 H 1.08998 * 109.46859 * 59.38153 * 25 23 22 49 49 H 1.08995 * 109.47683 * 179.38430 * 25 23 22 50 50 H 1.09000 * 109.21006 * 337.00725 * 26 9 8 51 51 H 1.08997 * 109.20600 * 96.36156 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2157 2.2077 -1.0861 5 6 2.6932 3.4411 -0.5831 6 6 3.0436 4.6371 -1.3759 7 8 2.9255 4.6204 -2.5858 8 7 3.4941 5.7469 -0.7580 9 6 3.8421 6.9330 -1.5444 10 1 3.1942 7.0094 -2.4176 11 6 5.3048 6.8723 -1.9724 12 6 5.5956 7.5749 -3.2214 13 7 5.1896 9.0091 -3.0388 14 6 6.1365 9.9943 -2.9503 15 1 5.8787 11.0145 -3.1941 16 6 7.4277 9.6821 -2.5475 17 7 7.6605 8.5642 -1.8928 18 14 8.8346 10.8483 -2.9344 19 1 8.5715 12.1673 -2.3050 20 1 10.1022 10.2893 -2.3998 21 1 8.9485 11.0157 -4.4056 22 6 3.7940 9.3301 -2.9578 23 6 3.1826 9.3555 -1.5348 24 6 1.6594 9.2512 -1.6353 25 6 3.5565 10.6708 -0.8484 26 6 3.7243 8.1690 -0.7004 27 7 2.7715 3.3178 0.7269 28 7 2.3892 2.1442 1.0830 29 1 2.3613 1.8237 1.9980 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5139 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 2.0336 1.9494 -2.1187 36 1 3.5886 5.7602 0.2072 37 1 5.9156 7.3062 -1.1807 38 1 5.5882 5.8262 -2.0894 39 1 5.0260 7.1301 -4.0374 40 1 6.6619 7.5171 -3.4401 41 1 8.5628 8.3458 -1.6117 42 1 3.2427 8.6010 -3.5515 43 1 3.6477 10.3120 -3.4080 44 1 1.2264 9.2810 -0.6356 45 1 1.2760 10.0857 -2.2225 46 1 1.3908 8.3123 -2.1197 47 1 4.6413 10.7448 -0.7715 48 1 3.1760 11.5074 -1.4344 49 1 3.1189 10.6972 0.1494 50 1 3.0444 7.9736 0.1288 51 1 4.7065 8.4283 -0.3052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089325979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:49 Heat of formation + Delta-G solvation = 50.221330 kcal Electronic energy + Delta-G solvation = -30199.310309 eV Core-core repulsion = 26328.586092 eV Total energy + Delta-G solvation = -3870.724217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 7.55 seconds Orbital eigenvalues (eV) -42.78062 -39.53183 -37.94471 -34.67231 -34.43826 -34.30248 -32.12025 -31.25630 -30.45442 -29.44074 -27.45098 -26.60208 -25.44059 -24.36455 -24.07074 -23.03763 -21.35612 -21.19943 -19.79954 -19.77137 -17.88584 -17.81031 -16.61618 -16.59346 -15.85303 -15.55064 -15.00923 -14.78332 -14.28994 -14.16870 -13.98267 -13.88041 -13.59073 -13.51720 -13.32720 -13.06137 -12.75872 -12.47232 -12.26754 -11.99551 -11.77791 -11.58588 -11.57513 -11.36413 -11.16081 -10.91897 -10.81046 -10.76576 -10.62153 -10.52693 -10.18668 -9.96428 -9.90892 -9.64926 -9.52941 -9.45439 -9.39963 -9.14255 -9.10897 -8.54498 -8.20287 -6.62360 -5.71563 -3.09735 1.59666 2.02849 2.70044 3.42968 3.49224 3.51491 3.54668 3.68963 4.30609 4.42099 4.57045 4.61939 4.85092 5.10662 5.22424 5.31534 5.38066 5.46146 5.49732 5.54818 5.58985 5.62084 5.71978 5.76008 5.83210 5.97240 6.10338 6.17519 6.22597 6.29072 6.37146 6.40415 6.46426 6.57974 6.65347 6.74630 6.81277 6.83203 6.88387 6.99970 7.08147 7.13143 7.18269 7.31897 7.38926 7.65912 7.71559 7.81431 8.00884 8.07391 8.50402 8.61028 9.26620 9.94802 10.48766 11.35293 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018152 B = 0.002872 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.156694 B = 9748.193049 C =10508.835194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C 0.011 3.989 4 C -0.176 4.176 5 C -0.002 4.002 6 C 0.597 3.403 7 O -0.534 6.534 8 N -0.704 5.704 9 C 0.146 3.854 10 H 0.087 0.913 11 C -0.133 4.133 12 C 0.169 3.831 13 N -0.585 5.585 14 C -0.241 4.241 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.900 5.900 18 Si 0.897 3.103 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.286 1.286 22 C 0.166 3.834 23 C -0.089 4.089 24 C -0.135 4.135 25 C -0.128 4.128 26 C -0.101 4.101 27 N -0.260 5.260 28 N -0.383 5.383 29 H 0.442 0.558 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.161 0.839 36 H 0.400 0.600 37 H 0.102 0.898 38 H 0.029 0.971 39 H 0.009 0.991 40 H 0.091 0.909 41 H 0.252 0.748 42 H 0.029 0.971 43 H 0.033 0.967 44 H 0.043 0.957 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.072 0.928 48 H 0.041 0.959 49 H 0.032 0.968 50 H 0.041 0.959 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.360 -14.670 7.603 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.115 4.115 4 C -0.204 4.204 5 C -0.163 4.163 6 C 0.380 3.620 7 O -0.409 6.409 8 N -0.353 5.353 9 C 0.043 3.957 10 H 0.105 0.895 11 C -0.172 4.172 12 C 0.045 3.955 13 N -0.305 5.305 14 C -0.371 4.371 15 H 0.084 0.916 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.728 3.272 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.213 1.213 22 C 0.036 3.964 23 C -0.093 4.093 24 C -0.193 4.193 25 C -0.185 4.185 26 C -0.139 4.139 27 N -0.096 5.096 28 N -0.097 5.097 29 H 0.286 0.714 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.179 0.821 36 H 0.234 0.766 37 H 0.120 0.880 38 H 0.047 0.953 39 H 0.027 0.973 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.091 0.909 48 H 0.061 0.939 49 H 0.051 0.949 50 H 0.060 0.940 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.934 -14.084 7.664 20.601 hybrid contribution 0.639 -0.074 0.420 0.768 sum -12.295 -14.159 8.084 20.420 Atomic orbital electron populations 1.21786 0.94057 1.02190 1.02711 1.20102 0.96403 0.88751 1.03947 1.21420 1.05769 0.96857 0.87410 1.21520 1.06747 0.92382 0.99749 1.22159 1.07303 0.97132 0.89736 1.16871 0.77437 0.81266 0.86400 1.90792 1.54425 1.82587 1.13056 1.46132 1.65004 1.13258 1.10938 1.20547 0.98432 0.82375 0.94368 0.89508 1.21335 0.93439 0.98835 1.03598 1.20101 1.00688 0.82204 0.92523 1.44259 0.99979 1.03674 1.82608 1.19124 0.90033 0.89977 1.37943 0.91631 1.24865 0.98583 0.97555 0.98646 1.69962 1.19886 1.25326 1.39321 0.86449 0.82169 0.80428 0.78188 1.21204 1.21906 1.21308 1.20522 0.86201 0.97975 0.91681 1.21927 0.93339 0.94259 0.99745 1.21847 0.96217 1.00842 1.00421 1.21742 1.02955 0.95919 0.97926 1.21784 1.01910 0.93441 0.96790 1.73569 1.18210 1.02489 1.15328 1.43285 1.47870 1.08801 1.09733 0.71391 0.92742 0.91785 0.91785 0.90732 0.89014 0.82112 0.76629 0.87972 0.95279 0.97268 0.89127 0.93831 0.95241 0.94866 0.93794 0.93319 0.93321 0.90920 0.93949 0.94878 0.94026 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.89 37.16 0.37 -0.40 16 2 C -0.05 -0.29 6.49 -27.89 -0.18 -0.47 16 3 C 0.01 0.10 6.48 -82.21 -0.53 -0.43 16 4 C -0.18 -2.22 10.73 -39.36 -0.42 -2.64 16 5 C 0.00 -0.03 7.13 -82.76 -0.59 -0.62 16 6 C 0.60 10.78 7.82 -12.39 -0.10 10.69 16 7 O -0.53 -11.27 16.58 5.30 0.09 -11.18 16 8 N -0.70 -12.23 4.94 -56.43 -0.28 -12.50 16 9 C 0.15 2.84 2.16 -69.60 -0.15 2.69 16 10 H 0.09 1.84 5.16 -51.93 -0.27 1.57 16 11 C -0.13 -2.97 4.74 -30.19 -0.14 -3.11 16 12 C 0.17 4.09 5.24 -5.21 -0.03 4.06 16 13 N -0.58 -14.17 2.60 -175.09 -0.46 -14.63 16 14 C -0.24 -6.33 8.94 -15.06 -0.13 -6.46 16 15 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 16 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 17 N -0.90 -24.55 9.43 55.49 0.52 -24.02 16 18 Si 0.90 21.46 29.60 -169.99 -5.03 16.43 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.17 3.49 4.00 -4.66 -0.02 3.47 16 23 C -0.09 -1.63 0.76 -152.53 -0.12 -1.75 16 24 C -0.14 -2.14 8.21 37.16 0.30 -1.84 16 25 C -0.13 -2.34 8.28 37.16 0.31 -2.03 16 26 C -0.10 -1.90 4.15 -27.19 -0.11 -2.01 16 27 N -0.26 -3.40 11.92 33.42 0.40 -3.00 16 28 N -0.38 -3.56 6.83 33.50 0.23 -3.33 16 29 H 0.44 2.39 8.96 -190.45 -1.71 0.68 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.40 6.24 8.25 -40.82 -0.34 5.90 16 37 H 0.10 2.54 5.29 -51.93 -0.27 2.26 16 38 H 0.03 0.66 8.02 -51.93 -0.42 0.24 16 39 H 0.01 0.22 8.12 -51.93 -0.42 -0.20 16 40 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 41 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 42 H 0.03 0.61 6.69 -51.93 -0.35 0.27 16 43 H 0.03 0.70 7.81 -51.93 -0.41 0.30 16 44 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.78 7.57 -51.93 -0.39 0.39 16 47 H 0.07 1.55 7.45 -51.93 -0.39 1.16 16 48 H 0.04 0.72 8.11 -51.93 -0.42 0.30 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.04 0.70 7.68 -51.93 -0.40 0.30 16 51 H 0.08 1.77 6.65 -51.93 -0.35 1.43 16 LS Contribution 394.36 15.07 5.94 5.94 Total: -1.00 -30.64 394.36 -10.01 -40.65 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -9.79 Total: 6.54 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.63 Total: -0.90 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.42 Total: -57.48 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.64 -10.01 -40.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089325979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.869 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.55 seconds