Wall clock time and date at job start Tue Mar 31 2020 18:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47588 * 2 1 4 4 C 1.35365 * 126.38548 * 274.71439 * 3 2 1 5 5 C 1.41501 * 105.50023 * 179.89399 * 4 3 2 6 6 C 1.47711 * 126.52009 * 180.09999 * 5 4 3 7 7 O 1.21577 * 119.99567 * 0.29648 * 6 5 4 8 8 N 1.34773 * 120.00256 * 180.29271 * 6 5 4 9 9 C 1.46503 * 120.00052 * 179.97438 * 8 6 5 10 10 H 1.09006 * 110.21134 * 33.07022 * 9 8 6 11 11 C 1.52522 * 110.25406 * 270.98396 * 9 8 6 12 12 C 1.46233 * 114.28033 * 151.61804 * 11 9 8 13 13 N 1.50164 * 107.53475 * 58.40912 * 12 11 9 14 14 C 1.36936 * 120.53641 * 109.56179 * 13 12 11 15 15 H 1.08008 * 119.99623 * 156.70280 * 14 13 12 16 16 C 1.38810 * 120.00276 * 336.70598 * 14 13 12 17 17 N 1.31622 * 119.99619 * 340.42049 * 16 14 13 18 18 Si 1.86797 * 119.99977 * 160.42485 * 16 14 13 19 19 H 1.48496 * 109.47244 * 59.99879 * 18 16 14 20 20 H 1.48500 * 109.47012 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47088 * 299.99491 * 18 16 14 22 22 C 1.43434 * 118.92716 * 289.59304 * 13 12 11 23 23 C 1.54897 * 116.08037 * 91.56090 * 22 13 12 24 24 C 1.53003 * 109.36314 * 198.43566 * 23 22 13 25 25 C 1.53003 * 109.25007 * 78.77953 * 23 22 13 26 26 C 1.50125 * 110.25021 * 155.00002 * 9 8 6 27 27 N 1.31810 * 106.96358 * 0.37082 * 5 4 3 28 28 N 1.28466 * 110.07690 * 359.76619 * 27 5 4 29 29 H 0.96995 * 124.88573 * 179.97438 * 28 27 5 30 30 H 1.09003 * 109.47211 * 300.00077 * 1 2 3 31 31 H 1.09002 * 109.47004 * 60.00081 * 1 2 3 32 32 H 1.09001 * 109.47699 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46910 * 120.00433 * 2 1 3 34 34 H 1.09003 * 109.47211 * 239.99923 * 2 1 3 35 35 H 1.07993 * 127.25172 * 0.02562 * 4 3 2 36 36 H 0.96994 * 120.00165 * 0.02562 * 8 6 5 37 37 H 1.08998 * 108.52567 * 272.86390 * 11 9 8 38 38 H 1.09007 * 108.52100 * 30.37451 * 11 9 8 39 39 H 1.09004 * 109.84451 * 298.89898 * 12 11 9 40 40 H 1.09002 * 109.90141 * 177.95125 * 12 11 9 41 41 H 0.97005 * 119.99456 * 179.97438 * 17 16 14 42 42 H 1.08998 * 108.15888 * 329.84627 * 22 13 12 43 43 H 1.09004 * 107.99817 * 213.15425 * 22 13 12 44 44 H 1.08993 * 109.47737 * 180.68348 * 24 23 22 45 45 H 1.09007 * 109.47087 * 300.68872 * 24 23 22 46 46 H 1.09005 * 109.46656 * 60.68387 * 24 23 22 47 47 H 1.08999 * 109.47015 * 299.38717 * 25 23 22 48 48 H 1.08998 * 109.46859 * 59.38153 * 25 23 22 49 49 H 1.08995 * 109.47683 * 179.38430 * 25 23 22 50 50 H 1.09000 * 109.21006 * 337.00725 * 26 9 8 51 51 H 1.08997 * 109.20600 * 96.36156 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2157 2.2077 -1.0861 5 6 2.6932 3.4411 -0.5831 6 6 3.0436 4.6371 -1.3759 7 8 2.9255 4.6204 -2.5858 8 7 3.4941 5.7469 -0.7580 9 6 3.8421 6.9330 -1.5444 10 1 3.1942 7.0094 -2.4176 11 6 5.3048 6.8723 -1.9724 12 6 5.5956 7.5749 -3.2214 13 7 5.1896 9.0091 -3.0388 14 6 6.1365 9.9943 -2.9503 15 1 5.8787 11.0145 -3.1941 16 6 7.4277 9.6821 -2.5475 17 7 7.6605 8.5642 -1.8928 18 14 8.8346 10.8483 -2.9344 19 1 8.5715 12.1673 -2.3050 20 1 10.1022 10.2893 -2.3998 21 1 8.9485 11.0157 -4.4056 22 6 3.7940 9.3301 -2.9578 23 6 3.1826 9.3555 -1.5348 24 6 1.6594 9.2512 -1.6353 25 6 3.5565 10.6708 -0.8484 26 6 3.7243 8.1690 -0.7004 27 7 2.7715 3.3178 0.7269 28 7 2.3892 2.1442 1.0830 29 1 2.3613 1.8237 1.9980 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5139 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 2.0336 1.9494 -2.1187 36 1 3.5886 5.7602 0.2072 37 1 5.9156 7.3062 -1.1807 38 1 5.5882 5.8262 -2.0894 39 1 5.0260 7.1301 -4.0374 40 1 6.6619 7.5171 -3.4401 41 1 8.5628 8.3458 -1.6117 42 1 3.2427 8.6010 -3.5515 43 1 3.6477 10.3120 -3.4080 44 1 1.2264 9.2810 -0.6356 45 1 1.2760 10.0857 -2.2225 46 1 1.3908 8.3123 -2.1197 47 1 4.6413 10.7448 -0.7715 48 1 3.1760 11.5074 -1.4344 49 1 3.1189 10.6972 0.1494 50 1 3.0444 7.9736 0.1288 51 1 4.7065 8.4283 -0.3052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089325979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:42 Heat of formation + Delta-G solvation = 31.096967 kcal Electronic energy + Delta-G solvation = -30200.139604 eV Core-core repulsion = 26328.586092 eV Total energy + Delta-G solvation = -3871.553512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.70430 -41.09905 -39.53287 -36.24135 -35.94443 -35.19982 -33.44926 -32.90373 -32.08801 -30.26575 -29.08129 -28.03370 -27.29052 -25.70543 -24.82307 -24.57284 -23.01105 -22.04689 -21.58650 -21.14000 -19.41563 -18.68794 -18.51056 -17.87615 -17.13954 -16.85675 -16.80104 -15.89969 -15.66632 -15.54078 -15.27815 -15.22606 -15.01516 -14.90916 -14.61464 -14.22393 -14.14406 -13.84331 -13.50417 -13.30390 -13.23354 -13.03744 -12.88923 -12.62729 -12.50689 -12.49724 -12.36351 -12.25956 -12.08576 -11.93529 -11.73068 -11.69622 -11.57021 -11.41163 -11.12057 -11.07338 -10.95666 -10.49776 -10.42467 -9.96793 -9.88326 -8.60436 -7.76424 -5.16187 0.50729 1.11092 1.49651 1.52894 1.57878 1.87562 2.27023 2.38340 2.58136 3.36055 3.37421 3.59602 3.68959 3.98162 3.99016 4.07845 4.09315 4.33088 4.43506 4.46712 4.49038 4.53950 4.55053 4.71121 4.77304 4.80202 4.82637 4.90649 4.95026 4.97105 5.08386 5.09427 5.12823 5.21424 5.22856 5.27213 5.30009 5.31982 5.35688 5.41803 5.48408 5.53584 5.66216 5.69849 5.72942 5.80668 6.08320 6.11120 6.46856 6.52114 6.87826 7.20318 7.22215 7.94958 8.48117 9.28163 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018152 B = 0.002872 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.156694 B = 9748.193049 C =10508.835194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C 0.038 3.962 4 C -0.202 4.202 5 C -0.033 4.033 6 C 0.595 3.405 7 O -0.573 6.573 8 N -0.698 5.698 9 C 0.162 3.838 10 H 0.074 0.926 11 C -0.116 4.116 12 C 0.174 3.826 13 N -0.595 5.595 14 C -0.245 4.245 15 H 0.064 0.936 16 C -0.043 4.043 17 N -0.917 5.917 18 Si 0.953 3.047 19 H -0.280 1.280 20 H -0.299 1.299 21 H -0.287 1.287 22 C 0.161 3.839 23 C -0.085 4.085 24 C -0.127 4.127 25 C -0.120 4.120 26 C -0.091 4.091 27 N -0.269 5.269 28 N -0.362 5.362 29 H 0.461 0.539 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.159 0.841 36 H 0.410 0.590 37 H 0.079 0.921 38 H 0.015 0.985 39 H 0.008 0.992 40 H 0.061 0.939 41 H 0.245 0.755 42 H 0.029 0.971 43 H 0.033 0.967 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.035 0.965 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.068 0.932 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.400 -15.768 9.409 23.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 C -0.089 4.089 4 C -0.230 4.230 5 C -0.193 4.193 6 C 0.381 3.619 7 O -0.450 6.450 8 N -0.347 5.347 9 C 0.058 3.942 10 H 0.092 0.908 11 C -0.156 4.156 12 C 0.050 3.950 13 N -0.316 5.316 14 C -0.375 4.375 15 H 0.082 0.918 16 C -0.239 4.239 17 N -0.564 5.564 18 Si 0.783 3.217 19 H -0.206 1.206 20 H -0.225 1.225 21 H -0.214 1.214 22 C 0.033 3.967 23 C -0.088 4.088 24 C -0.185 4.185 25 C -0.178 4.178 26 C -0.129 4.129 27 N -0.106 5.106 28 N -0.079 5.079 29 H 0.310 0.690 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.177 0.823 36 H 0.246 0.754 37 H 0.097 0.903 38 H 0.034 0.966 39 H 0.026 0.974 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.051 0.949 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.000 -15.173 9.511 23.360 hybrid contribution 1.225 0.172 -0.127 1.244 sum -13.775 -15.001 9.385 22.425 Atomic orbital electron populations 1.21780 0.93534 1.03256 1.02060 1.20298 0.96637 0.86176 1.05834 1.21875 1.03101 0.97863 0.86047 1.21681 1.08123 0.92290 1.00891 1.21772 1.10031 0.96850 0.90601 1.17294 0.76427 0.81945 0.86229 1.90756 1.56071 1.83386 1.14831 1.45983 1.64847 1.12691 1.11227 1.20173 0.95822 0.83779 0.94427 0.90846 1.21111 0.95331 0.97241 1.01876 1.19914 0.98826 0.82968 0.93324 1.44289 1.01072 1.03103 1.83116 1.19274 0.90722 0.90211 1.37276 0.91823 1.25459 1.00356 0.99018 0.99037 1.70114 1.19514 1.26582 1.40165 0.85556 0.79502 0.78995 0.77601 1.20580 1.22503 1.21408 1.20646 0.84594 0.97772 0.93669 1.21838 0.95265 0.94272 0.97452 1.21758 0.93546 1.01239 1.01943 1.21642 1.00622 0.96038 0.99471 1.21629 1.00847 0.93064 0.97370 1.73480 1.18626 1.04188 1.14288 1.43393 1.45875 1.07674 1.10933 0.69025 0.92672 0.93210 0.89897 0.87862 0.88144 0.82300 0.75438 0.90281 0.96626 0.97404 0.92055 0.94579 0.95284 0.94890 0.91729 0.91905 0.93794 0.94575 0.92840 0.92553 0.91381 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 71.98 0.71 -0.37 16 2 C -0.05 -0.39 6.49 29.85 0.19 -0.19 16 3 C 0.04 0.61 6.48 41.40 0.27 0.88 16 4 C -0.20 -4.96 10.73 22.41 0.24 -4.72 16 5 C -0.03 -0.99 7.13 42.46 0.30 -0.69 16 6 C 0.60 21.97 7.82 86.75 0.68 22.65 16 7 O -0.57 -25.07 16.58 -3.96 -0.07 -25.13 16 8 N -0.70 -24.50 4.94 -450.72 -2.23 -26.73 16 9 C 0.16 6.43 2.16 43.91 0.09 6.53 16 10 H 0.07 3.17 5.16 -2.38 -0.01 3.16 16 11 C -0.12 -5.43 4.74 28.35 0.13 -5.29 16 12 C 0.17 8.83 5.24 83.58 0.44 9.27 16 13 N -0.59 -29.65 2.60 -707.85 -1.84 -31.49 16 14 C -0.24 -13.14 8.94 84.03 0.75 -12.39 16 15 H 0.06 3.40 7.89 -2.91 -0.02 3.37 16 16 C -0.04 -2.35 4.91 84.86 0.42 -1.93 16 17 N -0.92 -51.96 9.43 21.65 0.20 -51.75 16 18 Si 0.95 45.05 29.60 68.60 2.03 47.09 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 22 C 0.16 6.83 4.00 87.59 0.35 7.18 16 23 C -0.08 -3.02 0.76 -50.90 -0.04 -3.06 16 24 C -0.13 -3.69 8.21 71.98 0.59 -3.10 16 25 C -0.12 -4.23 8.28 71.98 0.60 -3.64 16 26 C -0.09 -3.38 4.15 30.30 0.13 -3.26 16 27 N -0.27 -6.64 11.92 -48.18 -0.57 -7.22 16 28 N -0.36 -5.79 6.83 -47.93 -0.33 -6.12 16 29 H 0.46 3.41 8.96 -220.00 -1.97 1.44 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.16 3.84 8.06 -2.91 -0.02 3.81 16 36 H 0.41 12.68 8.25 -92.71 -0.77 11.92 16 37 H 0.08 4.12 5.29 -2.39 -0.01 4.11 16 38 H 0.02 0.74 8.02 -2.38 -0.02 0.72 16 39 H 0.01 0.39 8.12 -2.39 -0.02 0.37 16 40 H 0.06 3.46 6.06 -2.39 -0.01 3.45 16 41 H 0.24 13.76 8.31 -92.70 -0.77 12.99 16 42 H 0.03 1.22 6.69 -2.39 -0.02 1.20 16 43 H 0.03 1.39 7.81 -2.38 -0.02 1.37 16 44 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 45 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.04 1.32 7.57 -2.38 -0.02 1.31 16 47 H 0.04 1.53 7.45 -2.39 -0.02 1.51 16 48 H 0.05 1.73 8.11 -2.39 -0.02 1.71 16 49 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.07 2.16 7.68 -2.39 -0.02 2.15 16 51 H 0.05 2.23 6.65 -2.39 -0.02 2.21 16 Total: -1.00 -69.45 394.36 1.26 -68.19 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -1.79 Total: 25.30 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.86 Total: 7.87 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -4.77 Total: -123.31 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.07 Total: -25.13 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.09 kcal Total: -69.45 1.26 -68.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089325979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.282 kcal (2) G-P(sol) polarization free energy of solvation -69.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds