Wall clock time and date at job start Tue Mar 31 2020 18:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47346 * 2 1 4 4 C 1.35368 * 126.38497 * 84.99811 * 3 2 1 5 5 C 1.41500 * 105.49965 * 180.26049 * 4 3 2 6 6 C 1.47709 * 126.51540 * 179.75831 * 5 4 3 7 7 O 1.21567 * 120.00006 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00090 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00201 * 180.02562 * 8 6 5 10 10 H 1.09001 * 108.45076 * 327.31102 * 9 8 6 11 11 C 1.47090 * 108.51677 * 85.00069 * 9 8 6 12 12 C 1.54850 * 110.32996 * 184.05510 * 11 9 8 13 13 N 1.44576 * 109.60393 * 288.73650 * 12 11 9 14 14 C 1.36941 * 118.64438 * 270.70375 * 13 12 11 15 15 H 1.08003 * 119.99605 * 30.46497 * 14 13 12 16 16 C 1.38809 * 120.00312 * 210.46830 * 14 13 12 17 17 N 1.31618 * 119.99753 * 10.91497 * 16 14 13 18 18 Si 1.86797 * 120.00090 * 190.91536 * 16 14 13 19 19 H 1.48501 * 109.47144 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47030 * 119.99960 * 18 16 14 21 21 H 1.48500 * 109.47249 * 240.00050 * 18 16 14 22 22 C 1.47601 * 122.71783 * 90.71921 * 13 12 11 23 23 C 1.53950 * 112.14099 * 317.87304 * 22 13 12 24 24 C 1.53003 * 109.36887 * 79.62549 * 23 22 13 25 25 C 1.53001 * 109.36954 * 199.36492 * 23 22 13 26 26 C 1.50879 * 110.09658 * 319.43576 * 23 22 13 27 27 N 1.31808 * 106.96564 * 359.60704 * 5 4 3 28 28 N 1.28474 * 110.06995 * 0.40822 * 27 5 4 29 29 H 0.97001 * 124.87592 * 179.77077 * 28 27 5 30 30 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46929 * 300.00042 * 1 2 3 32 32 H 1.09001 * 109.46800 * 59.99964 * 1 2 3 33 33 H 1.09000 * 109.46929 * 239.99957 * 2 1 3 34 34 H 1.09001 * 109.46800 * 120.00036 * 2 1 3 35 35 H 1.08001 * 127.24514 * 359.97438 * 4 3 2 36 36 H 0.96999 * 119.99931 * 0.02562 * 8 6 5 37 37 H 1.08996 * 109.32743 * 304.32387 * 11 9 8 38 38 H 1.09004 * 109.32918 * 63.96185 * 11 9 8 39 39 H 1.09007 * 109.44808 * 48.77351 * 12 11 9 40 40 H 1.08997 * 109.45683 * 168.71752 * 12 11 9 41 41 H 0.97002 * 119.99867 * 179.97438 * 17 16 14 42 42 H 1.08994 * 108.94710 * 78.55661 * 22 13 12 43 43 H 1.09001 * 108.95507 * 197.18900 * 22 13 12 44 44 H 1.09001 * 109.46815 * 60.12765 * 24 23 22 45 45 H 1.08998 * 109.47492 * 180.13225 * 24 23 22 46 46 H 1.09000 * 109.47038 * 300.13896 * 24 23 22 47 47 H 1.09004 * 109.46327 * 60.00445 * 25 23 22 48 48 H 1.08995 * 109.47584 * 179.97438 * 25 23 22 49 49 H 1.08998 * 109.47479 * 300.00412 * 25 23 22 50 50 H 1.09003 * 109.48876 * 331.91550 * 26 23 22 51 51 H 1.09004 * 109.48735 * 211.85010 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2105 2.2096 1.0856 5 6 2.6869 3.4434 0.5826 6 6 3.0293 4.6421 1.3747 7 8 2.9104 4.6257 2.5844 8 7 3.4736 5.7542 0.7563 9 6 3.8138 6.9429 1.5420 10 1 3.1539 6.9842 2.4086 11 6 5.1996 6.8085 2.0163 12 6 5.5705 7.9966 2.9376 13 7 5.7011 9.2005 2.1479 14 6 6.9237 9.5041 1.6110 15 1 7.6051 8.7120 1.3376 16 6 7.2874 10.8298 1.4184 17 7 6.5608 11.7942 1.9421 18 14 8.8079 11.2450 0.4159 19 1 9.4450 9.9907 -0.0597 20 1 8.4192 12.0758 -0.7519 21 1 9.7680 11.9985 1.2618 22 6 4.5710 10.1162 1.8966 23 6 3.2691 9.3580 1.5802 24 6 2.6414 8.8615 2.8843 25 6 2.2922 10.2999 0.8736 26 6 3.5602 8.1792 0.6846 27 7 2.7701 3.3184 -0.7269 28 7 2.3883 2.1445 -1.0830 29 1 2.3603 1.8241 -1.9981 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0235 1.9528 2.1179 36 1 3.5682 5.7674 -0.2090 37 1 5.3022 5.8760 2.5712 38 1 5.8743 6.7948 1.1602 39 1 4.7881 8.1351 3.6839 40 1 6.5160 7.7868 3.4378 41 1 6.8151 12.7206 1.8078 42 1 4.4143 10.7355 2.7796 43 1 4.8187 10.7611 1.0534 44 1 2.4179 9.7129 3.5271 45 1 1.7206 8.3222 2.6621 46 1 3.3388 8.1957 3.3927 47 1 2.7395 10.6582 -0.0536 48 1 1.3698 9.7646 0.6484 49 1 2.0716 11.1478 1.5219 50 1 4.4428 8.3904 0.0809 51 1 2.7066 7.9996 0.0309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089325980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:05 Heat of formation + Delta-G solvation = 59.199613 kcal Electronic energy + Delta-G solvation = -30020.091458 eV Core-core repulsion = 26149.756569 eV Total energy + Delta-G solvation = -3870.334890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.86349 -39.94159 -38.21536 -34.79029 -34.61958 -34.14496 -32.31950 -31.68162 -30.09136 -29.40299 -27.39265 -26.79475 -25.39704 -24.57788 -24.14712 -23.61245 -21.60720 -21.27782 -19.93266 -19.55783 -17.94023 -17.85193 -16.76132 -16.57320 -15.94862 -15.84888 -15.16457 -14.85919 -14.44797 -14.24668 -14.14547 -13.96496 -13.70120 -13.53870 -13.36024 -12.86328 -12.82829 -12.58089 -12.50219 -12.21438 -12.04301 -11.70584 -11.63162 -11.42426 -11.35200 -11.03980 -10.97591 -10.77189 -10.66454 -10.32459 -10.28383 -10.21613 -9.96837 -9.79539 -9.57174 -9.54335 -9.38611 -9.18555 -9.17384 -8.63391 -8.34784 -6.52247 -5.71612 -3.19814 1.50754 1.94140 2.62282 3.38840 3.43056 3.47275 3.49160 3.56712 4.23602 4.34422 4.53943 4.54663 4.79518 5.04350 5.14561 5.24098 5.33501 5.37602 5.44294 5.46897 5.47263 5.60308 5.69458 5.70767 5.76379 5.78946 5.98483 6.01552 6.16762 6.20878 6.31690 6.33595 6.35940 6.40892 6.45436 6.50238 6.71125 6.73550 6.76696 6.85561 6.88748 6.96099 7.01712 7.08473 7.25641 7.52500 7.59213 7.81697 7.89163 7.90441 8.46503 8.56532 9.32222 9.97730 10.44836 11.34989 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.002692 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.200674 B =10397.816901 C =10982.784341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C 0.012 3.988 4 C -0.176 4.176 5 C -0.004 4.004 6 C 0.597 3.403 7 O -0.536 6.536 8 N -0.711 5.711 9 C 0.141 3.859 10 H 0.098 0.902 11 C -0.155 4.155 12 C 0.154 3.846 13 N -0.588 5.588 14 C -0.255 4.255 15 H 0.063 0.937 16 C 0.006 3.994 17 N -0.904 5.904 18 Si 0.899 3.101 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.193 3.807 23 C -0.089 4.089 24 C -0.155 4.155 25 C -0.130 4.130 26 C -0.101 4.101 27 N -0.260 5.260 28 N -0.382 5.382 29 H 0.443 0.557 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.161 0.839 36 H 0.400 0.600 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.252 0.748 42 H 0.027 0.973 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.041 0.959 46 H 0.075 0.925 47 H 0.052 0.948 48 H 0.042 0.958 49 H 0.052 0.948 50 H 0.078 0.922 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.874 -20.093 -6.231 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.114 4.114 4 C -0.204 4.204 5 C -0.165 4.165 6 C 0.381 3.619 7 O -0.411 6.411 8 N -0.361 5.361 9 C 0.039 3.961 10 H 0.115 0.885 11 C -0.196 4.196 12 C 0.025 3.975 13 N -0.309 5.309 14 C -0.385 4.385 15 H 0.080 0.920 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.730 3.270 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.218 1.218 22 C 0.068 3.932 23 C -0.091 4.091 24 C -0.211 4.211 25 C -0.188 4.188 26 C -0.139 4.139 27 N -0.095 5.095 28 N -0.096 5.096 29 H 0.287 0.713 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.179 0.821 36 H 0.234 0.766 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.097 0.903 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.627 -19.258 -6.247 23.861 hybrid contribution 0.671 -0.337 -1.001 1.252 sum -11.956 -19.595 -7.249 24.072 Atomic orbital electron populations 1.21788 0.94010 1.02243 1.02724 1.20112 0.96439 0.88711 1.03977 1.21435 1.05667 0.96867 0.87386 1.21520 1.06823 0.92305 0.99773 1.22136 1.07526 0.97080 0.89800 1.16889 0.77280 0.81338 0.86401 1.90780 1.54450 1.82829 1.13079 1.46374 1.65390 1.13113 1.11220 1.20434 0.98055 0.82472 0.95113 0.88475 1.21879 0.95706 1.00435 1.01579 1.20806 0.98744 0.86201 0.91704 1.43616 1.06510 1.23229 1.57572 1.19217 0.93595 0.90840 1.34871 0.91966 1.25133 0.97819 0.96445 0.99831 1.70037 1.39869 0.98877 1.46017 0.86269 0.83034 0.78037 0.79706 1.20352 1.21716 1.21757 1.21069 0.82170 0.89713 1.00269 1.20933 0.98353 0.95441 0.94396 1.22384 0.99946 1.00938 0.97855 1.21789 0.97766 0.99026 1.00224 1.21293 1.01454 0.93287 0.97847 1.73574 1.18186 1.02491 1.15293 1.43295 1.47805 1.08752 1.09773 0.71332 0.91740 0.91789 0.92716 0.90699 0.88995 0.82098 0.76621 0.92919 0.92119 0.93719 0.93430 0.93804 0.95491 0.90916 0.93256 0.93998 0.90644 0.92900 0.93864 0.92897 0.90347 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.89 37.16 0.37 -0.32 16 2 C -0.05 -0.26 6.49 -27.88 -0.18 -0.44 16 3 C 0.01 0.10 6.48 -82.21 -0.53 -0.43 16 4 C -0.18 -2.05 10.73 -39.36 -0.42 -2.48 16 5 C 0.00 -0.06 7.13 -82.77 -0.59 -0.65 16 6 C 0.60 9.90 7.67 -12.39 -0.10 9.80 16 7 O -0.54 -10.36 16.43 5.31 0.09 -10.28 16 8 N -0.71 -11.26 4.88 -57.81 -0.28 -11.54 16 9 C 0.14 2.48 1.79 -70.99 -0.13 2.35 16 10 H 0.10 1.81 3.95 -51.93 -0.20 1.61 16 11 C -0.15 -2.97 5.19 -28.59 -0.15 -3.12 16 12 C 0.15 3.31 5.58 -4.09 -0.02 3.28 16 13 N -0.59 -14.33 2.26 -172.10 -0.39 -14.72 16 14 C -0.26 -6.87 9.41 -15.06 -0.14 -7.02 16 15 H 0.06 1.68 7.85 -52.48 -0.41 1.27 16 16 C 0.01 0.17 4.97 -17.43 -0.09 0.09 16 17 N -0.90 -25.89 11.00 55.49 0.61 -25.28 16 18 Si 0.90 21.72 29.57 -169.99 -5.03 16.69 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 C 0.19 4.48 3.53 -2.94 -0.01 4.47 16 23 C -0.09 -1.65 0.75 -155.08 -0.12 -1.76 16 24 C -0.15 -2.70 6.76 37.16 0.25 -2.45 16 25 C -0.13 -2.14 8.15 37.16 0.30 -1.84 16 26 C -0.10 -1.78 4.38 -28.02 -0.12 -1.90 16 27 N -0.26 -3.16 11.92 33.42 0.40 -2.76 16 28 N -0.38 -3.27 6.83 33.50 0.23 -3.04 16 29 H 0.44 2.11 8.96 -190.44 -1.71 0.41 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.40 5.73 8.34 -40.82 -0.34 5.39 16 37 H 0.05 1.01 7.95 -51.93 -0.41 0.60 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.04 0.93 5.22 -51.92 -0.27 0.66 16 40 H 0.05 1.05 7.99 -51.93 -0.41 0.63 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.03 0.69 7.83 -51.93 -0.41 0.29 16 43 H 0.07 1.89 6.31 -51.93 -0.33 1.56 16 44 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 45 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16 46 H 0.08 1.39 3.16 -51.93 -0.16 1.23 16 47 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 48 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 49 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.08 1.56 7.48 -51.93 -0.39 1.17 16 51 H 0.05 0.82 7.63 -51.93 -0.40 0.43 16 LS Contribution 391.38 15.07 5.90 5.90 Total: -1.00 -32.02 391.38 -9.79 -41.80 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -9.64 Total: 5.63 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.68 Total: -2.41 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.57 Total: -57.34 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.02 -9.79 -41.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089325980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.003 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds