Wall clock time and date at job start Tue Mar 31 2020 18:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47346 * 2 1 4 4 C 1.35368 * 126.38497 * 84.99811 * 3 2 1 5 5 C 1.41500 * 105.49965 * 180.26049 * 4 3 2 6 6 C 1.47709 * 126.51540 * 179.75831 * 5 4 3 7 7 O 1.21567 * 120.00006 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00090 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00201 * 180.02562 * 8 6 5 10 10 H 1.09001 * 108.45076 * 327.31102 * 9 8 6 11 11 C 1.47090 * 108.51677 * 85.00069 * 9 8 6 12 12 C 1.54850 * 110.32996 * 184.05510 * 11 9 8 13 13 N 1.44576 * 109.60393 * 288.73650 * 12 11 9 14 14 C 1.36941 * 118.64438 * 270.70375 * 13 12 11 15 15 H 1.08003 * 119.99605 * 30.46497 * 14 13 12 16 16 C 1.38809 * 120.00312 * 210.46830 * 14 13 12 17 17 N 1.31618 * 119.99753 * 10.91497 * 16 14 13 18 18 Si 1.86797 * 120.00090 * 190.91536 * 16 14 13 19 19 H 1.48501 * 109.47144 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47030 * 119.99960 * 18 16 14 21 21 H 1.48500 * 109.47249 * 240.00050 * 18 16 14 22 22 C 1.47601 * 122.71783 * 90.71921 * 13 12 11 23 23 C 1.53950 * 112.14099 * 317.87304 * 22 13 12 24 24 C 1.53003 * 109.36887 * 79.62549 * 23 22 13 25 25 C 1.53001 * 109.36954 * 199.36492 * 23 22 13 26 26 C 1.50879 * 110.09658 * 319.43576 * 23 22 13 27 27 N 1.31808 * 106.96564 * 359.60704 * 5 4 3 28 28 N 1.28474 * 110.06995 * 0.40822 * 27 5 4 29 29 H 0.97001 * 124.87592 * 179.77077 * 28 27 5 30 30 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46929 * 300.00042 * 1 2 3 32 32 H 1.09001 * 109.46800 * 59.99964 * 1 2 3 33 33 H 1.09000 * 109.46929 * 239.99957 * 2 1 3 34 34 H 1.09001 * 109.46800 * 120.00036 * 2 1 3 35 35 H 1.08001 * 127.24514 * 359.97438 * 4 3 2 36 36 H 0.96999 * 119.99931 * 0.02562 * 8 6 5 37 37 H 1.08996 * 109.32743 * 304.32387 * 11 9 8 38 38 H 1.09004 * 109.32918 * 63.96185 * 11 9 8 39 39 H 1.09007 * 109.44808 * 48.77351 * 12 11 9 40 40 H 1.08997 * 109.45683 * 168.71752 * 12 11 9 41 41 H 0.97002 * 119.99867 * 179.97438 * 17 16 14 42 42 H 1.08994 * 108.94710 * 78.55661 * 22 13 12 43 43 H 1.09001 * 108.95507 * 197.18900 * 22 13 12 44 44 H 1.09001 * 109.46815 * 60.12765 * 24 23 22 45 45 H 1.08998 * 109.47492 * 180.13225 * 24 23 22 46 46 H 1.09000 * 109.47038 * 300.13896 * 24 23 22 47 47 H 1.09004 * 109.46327 * 60.00445 * 25 23 22 48 48 H 1.08995 * 109.47584 * 179.97438 * 25 23 22 49 49 H 1.08998 * 109.47479 * 300.00412 * 25 23 22 50 50 H 1.09003 * 109.48876 * 331.91550 * 26 23 22 51 51 H 1.09004 * 109.48735 * 211.85010 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2105 2.2096 1.0856 5 6 2.6869 3.4434 0.5826 6 6 3.0293 4.6421 1.3747 7 8 2.9104 4.6257 2.5844 8 7 3.4736 5.7542 0.7563 9 6 3.8138 6.9429 1.5420 10 1 3.1539 6.9842 2.4086 11 6 5.1996 6.8085 2.0163 12 6 5.5705 7.9966 2.9376 13 7 5.7011 9.2005 2.1479 14 6 6.9237 9.5041 1.6110 15 1 7.6051 8.7120 1.3376 16 6 7.2874 10.8298 1.4184 17 7 6.5608 11.7942 1.9421 18 14 8.8079 11.2450 0.4159 19 1 9.4450 9.9907 -0.0597 20 1 8.4192 12.0758 -0.7519 21 1 9.7680 11.9985 1.2618 22 6 4.5710 10.1162 1.8966 23 6 3.2691 9.3580 1.5802 24 6 2.6414 8.8615 2.8843 25 6 2.2922 10.2999 0.8736 26 6 3.5602 8.1792 0.6846 27 7 2.7701 3.3184 -0.7269 28 7 2.3883 2.1445 -1.0830 29 1 2.3603 1.8241 -1.9981 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0235 1.9528 2.1179 36 1 3.5682 5.7674 -0.2090 37 1 5.3022 5.8760 2.5712 38 1 5.8743 6.7948 1.1602 39 1 4.7881 8.1351 3.6839 40 1 6.5160 7.7868 3.4378 41 1 6.8151 12.7206 1.8078 42 1 4.4143 10.7355 2.7796 43 1 4.8187 10.7611 1.0534 44 1 2.4179 9.7129 3.5271 45 1 1.7206 8.3222 2.6621 46 1 3.3388 8.1957 3.3927 47 1 2.7395 10.6582 -0.0536 48 1 1.3698 9.7646 0.6484 49 1 2.0716 11.1478 1.5219 50 1 4.4428 8.3904 0.0809 51 1 2.7066 7.9996 0.0309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089325980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:01 Heat of formation + Delta-G solvation = 38.905575 kcal Electronic energy + Delta-G solvation = -30020.971474 eV Core-core repulsion = 26149.756569 eV Total energy + Delta-G solvation = -3871.214905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.69696 -41.40632 -39.68063 -36.38523 -35.79026 -35.20285 -33.82086 -32.95027 -31.63321 -30.22169 -28.92852 -28.21683 -27.34106 -26.00598 -25.16983 -24.60819 -23.18226 -22.03875 -21.28506 -21.13576 -19.39253 -18.67881 -18.48566 -17.94626 -17.31436 -16.94559 -16.80794 -15.98267 -15.77717 -15.52357 -15.32275 -15.25788 -15.02777 -14.75049 -14.51379 -14.26473 -14.17516 -14.05632 -13.81925 -13.34140 -13.30370 -12.99319 -12.95504 -12.85666 -12.63405 -12.49585 -12.27170 -12.14230 -12.08119 -12.00671 -11.81072 -11.71818 -11.62904 -11.56403 -11.11656 -11.02278 -10.77331 -10.48171 -10.44111 -9.98992 -9.95299 -8.55205 -7.81159 -5.32426 0.51962 1.11847 1.45247 1.47464 1.57222 1.88203 2.27707 2.39051 2.52635 3.31662 3.39235 3.68967 3.69596 3.76314 4.01535 4.05359 4.14399 4.23346 4.33644 4.43380 4.43392 4.48260 4.54781 4.70838 4.74549 4.75923 4.82588 4.83614 4.85208 4.86727 4.99701 5.04864 5.09332 5.14997 5.20583 5.21652 5.25797 5.29608 5.31548 5.41591 5.42598 5.51198 5.56399 5.60023 5.69330 5.75671 5.90310 6.10963 6.46665 6.52050 6.88271 7.20827 7.23927 7.98747 8.39265 9.22787 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.002692 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.200674 B =10397.816901 C =10982.784341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C 0.037 3.963 4 C -0.201 4.201 5 C -0.034 4.034 6 C 0.597 3.403 7 O -0.570 6.570 8 N -0.705 5.705 9 C 0.148 3.852 10 H 0.093 0.907 11 C -0.136 4.136 12 C 0.152 3.848 13 N -0.599 5.599 14 C -0.261 4.261 15 H 0.058 0.942 16 C -0.044 4.044 17 N -0.932 5.932 18 Si 0.961 3.039 19 H -0.270 1.270 20 H -0.290 1.290 21 H -0.293 1.293 22 C 0.207 3.793 23 C -0.083 4.083 24 C -0.148 4.148 25 C -0.126 4.126 26 C -0.091 4.091 27 N -0.270 5.270 28 N -0.363 5.363 29 H 0.461 0.539 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.160 0.840 36 H 0.408 0.592 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.248 0.752 42 H -0.006 1.006 43 H 0.040 0.960 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.071 0.929 49 H 0.051 0.949 50 H 0.054 0.946 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.266 -22.690 -8.054 27.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.090 4.090 4 C -0.229 4.229 5 C -0.193 4.193 6 C 0.382 3.618 7 O -0.448 6.448 8 N -0.354 5.354 9 C 0.045 3.955 10 H 0.111 0.889 11 C -0.178 4.178 12 C 0.024 3.976 13 N -0.321 5.321 14 C -0.392 4.392 15 H 0.076 0.924 16 C -0.239 4.239 17 N -0.578 5.578 18 Si 0.790 3.210 19 H -0.195 1.195 20 H -0.216 1.216 21 H -0.221 1.221 22 C 0.082 3.918 23 C -0.085 4.085 24 C -0.204 4.204 25 C -0.184 4.184 26 C -0.129 4.129 27 N -0.107 5.107 28 N -0.080 5.080 29 H 0.309 0.691 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.178 0.822 36 H 0.244 0.756 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.012 0.988 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.070 0.930 50 H 0.073 0.927 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.025 -21.888 -8.109 27.231 hybrid contribution 1.087 0.355 -0.436 1.224 sum -12.938 -21.533 -8.545 26.534 Atomic orbital electron populations 1.21782 0.93616 1.03226 1.02044 1.20294 0.96567 0.86302 1.05809 1.21875 1.03162 0.97841 0.86135 1.21685 1.08129 0.92243 1.00865 1.21828 1.09994 0.96921 0.90586 1.17236 0.76394 0.81930 0.86227 1.90749 1.55931 1.83533 1.14619 1.46197 1.65248 1.12541 1.11460 1.20180 0.96650 0.83336 0.95286 0.88926 1.21636 0.96645 0.99080 1.00392 1.20889 0.98554 0.86018 0.92139 1.43782 1.06301 1.23948 1.58051 1.19442 0.94467 0.90867 1.34415 0.92382 1.25810 1.00578 0.96390 1.01171 1.70197 1.41351 0.98835 1.47396 0.85295 0.79806 0.77774 0.78098 1.19476 1.21640 1.22054 1.20810 0.84051 0.89541 0.97371 1.20814 0.96313 0.95771 0.95632 1.22286 1.00333 1.00855 0.96960 1.21752 0.98176 0.98784 0.99641 1.21174 1.01426 0.92717 0.97551 1.73491 1.18674 1.04108 1.14414 1.43402 1.45977 1.07710 1.10919 0.69109 0.89965 0.93160 0.92749 0.87977 0.88084 0.82197 0.75599 0.92899 0.93395 0.92877 0.94607 0.94256 0.98763 0.94129 0.93141 0.91910 0.91906 0.93364 0.90991 0.92971 0.92695 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 71.98 0.71 -0.21 16 2 C -0.05 -0.32 6.49 29.85 0.19 -0.12 16 3 C 0.04 0.53 6.48 41.41 0.27 0.80 16 4 C -0.20 -4.46 10.73 22.41 0.24 -4.22 16 5 C -0.03 -0.91 7.13 42.46 0.30 -0.61 16 6 C 0.60 19.56 7.67 86.75 0.67 20.23 16 7 O -0.57 -22.16 16.43 -3.93 -0.06 -22.22 16 8 N -0.70 -21.79 4.88 -455.08 -2.22 -24.01 16 9 C 0.15 5.15 1.79 43.01 0.08 5.23 16 10 H 0.09 3.39 3.95 -2.39 -0.01 3.38 16 11 C -0.14 -5.30 5.19 29.39 0.15 -5.15 16 12 C 0.15 6.68 5.58 87.37 0.49 7.16 16 13 N -0.60 -30.09 2.26 -698.40 -1.58 -31.67 16 14 C -0.26 -14.44 9.41 84.03 0.79 -13.65 16 15 H 0.06 3.20 7.85 -2.91 -0.02 3.18 16 16 C -0.04 -2.46 4.97 84.86 0.42 -2.04 16 17 N -0.93 -55.11 11.00 21.65 0.24 -54.87 16 18 Si 0.96 45.50 29.57 68.60 2.03 47.53 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 22 C 0.21 9.94 3.53 86.49 0.31 10.25 16 23 C -0.08 -3.05 0.75 -52.55 -0.04 -3.09 16 24 C -0.15 -5.03 6.76 71.98 0.49 -4.55 16 25 C -0.13 -3.97 8.15 71.98 0.59 -3.38 16 26 C -0.09 -3.12 4.38 29.76 0.13 -2.99 16 27 N -0.27 -6.08 11.92 -48.18 -0.57 -6.66 16 28 N -0.36 -5.21 6.83 -47.93 -0.33 -5.54 16 29 H 0.46 2.81 8.96 -219.99 -1.97 0.84 16 30 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.41 11.25 8.34 -92.71 -0.77 10.48 16 37 H 0.05 2.05 7.95 -2.39 -0.02 2.03 16 38 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.05 2.26 5.22 -2.38 -0.01 2.25 16 40 H 0.04 1.63 7.99 -2.39 -0.02 1.61 16 41 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 42 H -0.01 -0.31 7.83 -2.39 -0.02 -0.33 16 43 H 0.04 2.19 6.31 -2.39 -0.02 2.17 16 44 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 45 H 0.06 1.89 7.90 -2.39 -0.02 1.87 16 46 H 0.06 2.31 3.16 -2.39 -0.01 2.30 16 47 H 0.05 1.55 8.12 -2.38 -0.02 1.53 16 48 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 49 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.05 2.18 7.48 -2.39 -0.02 2.16 16 51 H 0.08 2.30 7.63 -2.38 -0.02 2.28 16 Total: -1.00 -71.57 391.38 1.49 -70.08 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -1.79 Total: 23.72 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 5.78 Total: 3.64 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -4.46 Total: -122.75 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.06 Total: -22.22 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -71.57 1.49 -70.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089325980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.988 kcal (2) G-P(sol) polarization free energy of solvation -71.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds