Wall clock time and date at job start Tue Mar 31 2020 18:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.47222 * 2 1 4 4 N 1.33313 * 126.10599 * 270.02301 * 3 2 1 5 5 C 1.30858 * 109.68594 * 179.97438 * 4 3 2 6 6 N 1.34501 * 109.16272 * 359.73179 * 5 4 3 7 7 H 0.96998 * 126.47530 * 180.29197 * 6 5 4 8 8 C 1.36668 * 126.10717 * 89.99941 * 3 2 1 9 9 C 1.46768 * 126.84225 * 0.02562 * 8 3 2 10 10 O 1.21674 * 120.00289 * 359.97438 * 9 8 3 11 11 N 1.34776 * 119.99473 * 180.02562 * 9 8 3 12 12 C 1.46503 * 119.99699 * 180.02562 * 11 9 8 13 13 H 1.08998 * 108.44615 * 327.30592 * 12 11 9 14 14 C 1.47087 * 108.51578 * 84.99565 * 12 11 9 15 15 C 1.54866 * 110.18230 * 184.13943 * 14 12 11 16 16 N 1.44664 * 109.56053 * 288.47530 * 15 14 12 17 17 C 1.36936 * 118.81010 * 270.94886 * 16 15 14 18 18 H 1.07994 * 120.00369 * 27.24912 * 17 16 15 19 19 C 1.38819 * 119.99699 * 207.25282 * 17 16 15 20 20 N 1.31614 * 119.99960 * 16.36069 * 19 17 16 21 21 Si 1.86797 * 119.99778 * 196.35551 * 19 17 16 22 22 H 1.48498 * 109.47414 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46854 * 119.99800 * 21 19 17 24 24 H 1.48500 * 109.47355 * 239.99755 * 21 19 17 25 25 C 1.47598 * 122.54516 * 90.95674 * 16 15 14 26 26 C 1.53951 * 112.13838 * 317.85945 * 25 16 15 27 27 C 1.53007 * 109.36207 * 199.24044 * 26 25 16 28 28 C 1.53000 * 109.26691 * 79.56223 * 26 25 16 29 29 C 1.50877 * 110.09417 * 319.43197 * 26 25 16 30 30 H 1.09002 * 109.47125 * 59.99753 * 1 2 3 31 31 H 1.08998 * 109.47634 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47210 * 300.00485 * 1 2 3 33 33 H 1.08996 * 109.47210 * 239.99773 * 2 1 3 34 34 H 1.09002 * 109.46976 * 119.99714 * 2 1 3 35 35 H 1.07999 * 125.42208 * 179.97438 * 5 4 3 36 36 H 0.96998 * 120.00307 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.33080 * 304.31586 * 14 12 11 38 38 H 1.08999 * 109.32837 * 63.96329 * 14 12 11 39 39 H 1.08997 * 109.44823 * 48.69532 * 15 14 12 40 40 H 1.08993 * 109.44898 * 168.60836 * 15 14 12 41 41 H 0.96998 * 119.99867 * 180.02562 * 20 19 17 42 42 H 1.08998 * 108.94871 * 197.17275 * 25 16 15 43 43 H 1.09000 * 108.87562 * 78.49078 * 25 16 15 44 44 H 1.09004 * 109.46400 * 180.63243 * 27 26 25 45 45 H 1.08996 * 109.47537 * 300.63315 * 27 26 25 46 46 H 1.09001 * 109.46916 * 60.63944 * 27 26 25 47 47 H 1.09006 * 109.46701 * 300.00544 * 28 26 25 48 48 H 1.08999 * 109.47230 * 59.99972 * 28 26 25 49 49 H 1.08991 * 109.47229 * 179.97438 * 28 26 25 50 50 H 1.08993 * 109.49143 * 331.92825 * 29 26 25 51 51 H 1.09004 * 109.50747 * 211.86984 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2938 2.1616 -1.0771 5 6 2.7118 3.3452 -0.7072 6 7 2.7278 3.4078 0.6363 7 1 2.9915 4.1702 1.1749 8 6 2.3008 2.1801 1.1042 9 6 2.1578 1.7742 2.5073 10 8 1.7625 0.6563 2.7801 11 7 2.4634 2.6403 3.4937 12 6 2.3212 2.2350 4.8944 13 1 1.4844 1.5406 4.9693 14 6 3.5477 1.5344 5.3047 15 6 3.3981 0.9970 6.7494 16 7 3.4310 2.1016 7.6829 17 6 4.6402 2.5119 8.1775 18 1 5.5396 2.3606 7.5992 19 6 4.7099 3.1222 9.4223 20 7 3.7003 3.0240 10.2609 21 14 6.2368 4.0829 9.9073 22 1 7.2207 4.0429 8.7957 23 1 5.8658 5.4930 10.1887 24 1 6.8375 3.4771 11.1228 25 6 2.2107 2.8049 8.1242 26 6 1.2345 3.0583 6.9610 27 6 0.2580 4.1698 7.3513 28 6 0.4529 1.7758 6.6694 29 6 1.9959 3.4721 5.7260 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.9949 4.1458 -1.3744 36 1 2.7781 3.5317 3.2763 37 1 3.7309 0.7007 4.6268 38 1 4.3894 2.2256 5.2622 39 1 2.4504 0.4667 6.8431 40 1 4.2187 0.3142 6.9694 41 1 3.7489 3.4508 11.1306 42 1 2.4929 3.7613 8.5642 43 1 1.7100 2.2013 8.8812 44 1 -0.4411 4.3429 6.5331 45 1 -0.2931 3.8726 8.2435 46 1 0.8127 5.0857 7.5551 47 1 1.1475 0.9811 6.3968 48 1 -0.1060 1.4809 7.5575 49 1 -0.2398 1.9516 5.8465 50 1 2.9217 3.9674 6.0185 51 1 1.3875 4.1574 5.1358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089547912.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:40 Heat of formation + Delta-G solvation = 44.721923 kcal Electronic energy + Delta-G solvation = -30651.276477 eV Core-core repulsion = 26780.313788 eV Total energy + Delta-G solvation = -3870.962689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.41871 -40.06523 -38.33841 -35.14167 -34.32694 -34.09690 -32.48727 -31.82950 -30.26418 -28.97842 -27.48768 -26.91269 -25.49389 -24.54931 -23.90900 -22.97975 -22.12705 -20.96905 -19.92524 -19.58103 -18.95197 -17.78312 -16.70177 -16.34722 -16.01166 -15.68372 -15.29816 -14.94921 -14.40075 -14.26234 -14.18708 -13.98851 -13.73638 -13.52451 -13.44130 -12.97276 -12.71288 -12.66689 -12.41681 -12.33993 -11.82595 -11.55185 -11.51796 -11.47044 -11.17482 -11.02763 -10.83692 -10.78169 -10.54417 -10.45792 -10.36604 -10.27710 -10.22083 -10.06610 -9.84834 -9.62761 -9.50484 -9.31462 -8.94476 -8.61605 -8.41802 -6.67219 -5.80848 -3.24599 1.17066 2.66611 2.68392 3.21116 3.31572 3.32650 3.41575 3.42839 4.22381 4.46721 4.66325 4.83434 4.98316 5.12545 5.24936 5.34124 5.41073 5.45229 5.47008 5.51431 5.56130 5.61514 5.64423 5.81988 5.88900 5.97689 6.03710 6.14100 6.19123 6.19601 6.21420 6.22899 6.28012 6.31392 6.37571 6.43177 6.57734 6.60923 6.70827 6.73724 6.82807 6.85932 6.93809 6.96343 7.12747 7.40223 7.50330 7.69436 7.74603 7.80615 8.22080 8.44865 9.21853 9.88526 10.34708 11.26160 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016982 B = 0.003112 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.391589 B = 8994.947734 C = 9523.710967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 C 0.096 3.904 4 N -0.499 5.499 5 C 0.213 3.787 6 N -0.556 5.556 7 H 0.422 0.578 8 C -0.086 4.086 9 C 0.590 3.410 10 O -0.522 6.522 11 N -0.725 5.725 12 C 0.143 3.857 13 H 0.100 0.900 14 C -0.154 4.154 15 C 0.153 3.847 16 N -0.588 5.588 17 C -0.258 4.258 18 H 0.064 0.936 19 C 0.006 3.994 20 N -0.901 5.901 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.192 3.808 26 C -0.089 4.089 27 C -0.130 4.130 28 C -0.155 4.155 29 C -0.101 4.101 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.214 0.786 36 H 0.386 0.614 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.048 0.952 41 H 0.252 0.748 42 H 0.073 0.927 43 H 0.027 0.973 44 H 0.042 0.958 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.076 0.924 48 H 0.049 0.951 49 H 0.041 0.959 50 H 0.078 0.922 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.508 2.659 -17.646 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C -0.038 4.038 4 N -0.218 5.218 5 C -0.071 4.071 6 N -0.161 5.161 7 H 0.261 0.739 8 C -0.202 4.202 9 C 0.376 3.624 10 O -0.398 6.398 11 N -0.375 5.375 12 C 0.041 3.959 13 H 0.118 0.882 14 C -0.196 4.196 15 C 0.024 3.976 16 N -0.309 5.309 17 C -0.388 4.388 18 H 0.082 0.918 19 C -0.193 4.193 20 N -0.545 5.545 21 Si 0.727 3.273 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.066 3.934 26 C -0.091 4.091 27 C -0.188 4.188 28 C -0.212 4.212 29 C -0.139 4.139 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.230 0.770 36 H 0.219 0.781 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.045 0.955 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.094 0.906 48 H 0.068 0.932 49 H 0.060 0.940 50 H 0.097 0.903 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.934 1.609 -18.020 19.040 hybrid contribution 1.370 2.066 1.169 2.741 sum -4.565 3.675 -16.851 17.841 Atomic orbital electron populations 1.21606 0.94436 1.01751 1.01672 1.20056 0.96187 0.88758 1.03712 1.21046 0.99082 0.97066 0.86607 1.70114 1.18439 1.02701 1.30579 1.25107 1.01905 0.97989 0.82085 1.43357 1.50673 1.13221 1.08813 0.73936 1.21157 1.15499 0.87968 0.95561 1.16825 0.77976 0.85214 0.82425 1.90812 1.46661 1.19586 1.82716 1.46443 1.67525 1.15941 1.07541 1.20454 1.00517 0.97718 0.77217 0.88234 1.21879 0.97228 0.99819 1.00645 1.20821 0.99264 0.90159 0.87329 1.43660 1.03784 1.33456 1.49994 1.19214 0.86376 1.34953 0.98251 0.91814 1.25026 0.97222 1.01712 0.95297 1.70075 1.31560 1.45683 1.07170 0.86308 0.82943 0.79853 0.78163 1.20374 1.21668 1.21740 1.21070 0.84539 0.97821 0.89923 1.20918 0.96268 0.94630 0.97272 1.21789 0.98311 0.98253 1.00473 1.22396 0.99831 0.98607 1.00351 1.21294 1.01125 0.95943 0.95522 0.93067 0.92193 0.92564 0.90797 0.88637 0.76983 0.78146 0.92845 0.92195 0.93581 0.93403 0.93748 0.90882 0.95504 0.93856 0.92782 0.92908 0.90590 0.93155 0.93993 0.90344 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.89 37.15 0.37 -1.16 16 2 C -0.05 -0.60 5.93 -27.89 -0.17 -0.76 16 3 C 0.10 1.25 6.40 -82.52 -0.53 0.72 16 4 N -0.50 -6.02 11.20 -10.64 -0.12 -6.14 16 5 C 0.21 1.78 13.01 -90.57 -1.18 0.60 16 6 N -0.56 -4.62 6.07 -10.78 -0.07 -4.69 16 7 H 0.42 2.13 8.32 -40.82 -0.34 1.79 16 8 C -0.09 -1.06 7.08 -82.14 -0.58 -1.64 16 9 C 0.59 8.41 7.63 -12.81 -0.10 8.32 16 10 O -0.52 -8.93 14.32 5.21 0.07 -8.85 16 11 N -0.73 -9.44 4.88 -58.11 -0.28 -9.73 16 12 C 0.14 2.24 1.79 -70.99 -0.13 2.11 16 13 H 0.10 1.69 3.94 -51.93 -0.20 1.49 16 14 C -0.15 -2.72 5.20 -28.58 -0.15 -2.87 16 15 C 0.15 3.11 5.58 -4.04 -0.02 3.08 16 16 N -0.59 -13.69 2.27 -172.03 -0.39 -14.08 16 17 C -0.26 -6.72 9.44 -15.06 -0.14 -6.86 16 18 H 0.06 1.66 7.88 -52.49 -0.41 1.25 16 19 C 0.01 0.17 4.84 -17.43 -0.08 0.08 16 20 N -0.90 -25.16 11.11 55.49 0.62 -24.55 16 21 Si 0.90 21.05 29.58 -169.99 -5.03 16.02 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 C 0.19 4.25 3.56 -2.94 -0.01 4.24 16 26 C -0.09 -1.53 0.75 -155.07 -0.12 -1.65 16 27 C -0.13 -2.00 8.15 37.16 0.30 -1.70 16 28 C -0.16 -2.54 6.75 37.16 0.25 -2.29 16 29 C -0.10 -1.60 4.39 -28.02 -0.12 -1.72 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.29 6.48 -51.93 -0.34 0.95 16 35 H 0.21 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.39 3.95 7.86 -40.82 -0.32 3.63 16 37 H 0.05 0.95 7.96 -51.93 -0.41 0.53 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.91 5.19 -51.93 -0.27 0.64 16 40 H 0.05 1.01 7.99 -51.93 -0.41 0.60 16 41 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.07 1.83 6.23 -51.93 -0.32 1.50 16 43 H 0.03 0.67 7.86 -51.93 -0.41 0.26 16 44 H 0.04 0.58 8.09 -51.93 -0.42 0.16 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.05 0.82 8.13 -51.93 -0.42 0.39 16 47 H 0.08 1.32 3.13 -51.93 -0.16 1.15 16 48 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 49 H 0.04 0.63 7.90 -51.93 -0.41 0.22 16 50 H 0.08 1.42 7.48 -51.93 -0.39 1.03 16 51 H 0.05 0.70 7.64 -51.93 -0.40 0.30 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -31.51 386.59 -9.94 -41.44 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -8.16 Total: 6.25 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.40 Total: -1.51 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.24 Total: -59.18 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.07 Total: -8.85 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.51 -9.94 -41.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089547912.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.167 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds