Wall clock time and date at job start Tue Mar 31 2020 18:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.47222 * 2 1 4 4 N 1.33313 * 126.10599 * 270.02301 * 3 2 1 5 5 C 1.30858 * 109.68594 * 179.97438 * 4 3 2 6 6 N 1.34501 * 109.16272 * 359.73179 * 5 4 3 7 7 H 0.96998 * 126.47530 * 180.29197 * 6 5 4 8 8 C 1.36668 * 126.10717 * 89.99941 * 3 2 1 9 9 C 1.46768 * 126.84225 * 0.02562 * 8 3 2 10 10 O 1.21674 * 120.00289 * 359.97438 * 9 8 3 11 11 N 1.34776 * 119.99473 * 180.02562 * 9 8 3 12 12 C 1.46503 * 119.99699 * 180.02562 * 11 9 8 13 13 H 1.08998 * 108.44615 * 327.30592 * 12 11 9 14 14 C 1.47087 * 108.51578 * 84.99565 * 12 11 9 15 15 C 1.54866 * 110.18230 * 184.13943 * 14 12 11 16 16 N 1.44664 * 109.56053 * 288.47530 * 15 14 12 17 17 C 1.36936 * 118.81010 * 270.94886 * 16 15 14 18 18 H 1.07994 * 120.00369 * 27.24912 * 17 16 15 19 19 C 1.38819 * 119.99699 * 207.25282 * 17 16 15 20 20 N 1.31614 * 119.99960 * 16.36069 * 19 17 16 21 21 Si 1.86797 * 119.99778 * 196.35551 * 19 17 16 22 22 H 1.48498 * 109.47414 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46854 * 119.99800 * 21 19 17 24 24 H 1.48500 * 109.47355 * 239.99755 * 21 19 17 25 25 C 1.47598 * 122.54516 * 90.95674 * 16 15 14 26 26 C 1.53951 * 112.13838 * 317.85945 * 25 16 15 27 27 C 1.53007 * 109.36207 * 199.24044 * 26 25 16 28 28 C 1.53000 * 109.26691 * 79.56223 * 26 25 16 29 29 C 1.50877 * 110.09417 * 319.43197 * 26 25 16 30 30 H 1.09002 * 109.47125 * 59.99753 * 1 2 3 31 31 H 1.08998 * 109.47634 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47210 * 300.00485 * 1 2 3 33 33 H 1.08996 * 109.47210 * 239.99773 * 2 1 3 34 34 H 1.09002 * 109.46976 * 119.99714 * 2 1 3 35 35 H 1.07999 * 125.42208 * 179.97438 * 5 4 3 36 36 H 0.96998 * 120.00307 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.33080 * 304.31586 * 14 12 11 38 38 H 1.08999 * 109.32837 * 63.96329 * 14 12 11 39 39 H 1.08997 * 109.44823 * 48.69532 * 15 14 12 40 40 H 1.08993 * 109.44898 * 168.60836 * 15 14 12 41 41 H 0.96998 * 119.99867 * 180.02562 * 20 19 17 42 42 H 1.08998 * 108.94871 * 197.17275 * 25 16 15 43 43 H 1.09000 * 108.87562 * 78.49078 * 25 16 15 44 44 H 1.09004 * 109.46400 * 180.63243 * 27 26 25 45 45 H 1.08996 * 109.47537 * 300.63315 * 27 26 25 46 46 H 1.09001 * 109.46916 * 60.63944 * 27 26 25 47 47 H 1.09006 * 109.46701 * 300.00544 * 28 26 25 48 48 H 1.08999 * 109.47230 * 59.99972 * 28 26 25 49 49 H 1.08991 * 109.47229 * 179.97438 * 28 26 25 50 50 H 1.08993 * 109.49143 * 331.92825 * 29 26 25 51 51 H 1.09004 * 109.50747 * 211.86984 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2938 2.1616 -1.0771 5 6 2.7118 3.3452 -0.7072 6 7 2.7278 3.4078 0.6363 7 1 2.9915 4.1702 1.1749 8 6 2.3008 2.1801 1.1042 9 6 2.1578 1.7742 2.5073 10 8 1.7625 0.6563 2.7801 11 7 2.4634 2.6403 3.4937 12 6 2.3212 2.2350 4.8944 13 1 1.4844 1.5406 4.9693 14 6 3.5477 1.5344 5.3047 15 6 3.3981 0.9970 6.7494 16 7 3.4310 2.1016 7.6829 17 6 4.6402 2.5119 8.1775 18 1 5.5396 2.3606 7.5992 19 6 4.7099 3.1222 9.4223 20 7 3.7003 3.0240 10.2609 21 14 6.2368 4.0829 9.9073 22 1 7.2207 4.0429 8.7957 23 1 5.8658 5.4930 10.1887 24 1 6.8375 3.4771 11.1228 25 6 2.2107 2.8049 8.1242 26 6 1.2345 3.0583 6.9610 27 6 0.2580 4.1698 7.3513 28 6 0.4529 1.7758 6.6694 29 6 1.9959 3.4721 5.7260 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.9949 4.1458 -1.3744 36 1 2.7781 3.5317 3.2763 37 1 3.7309 0.7007 4.6268 38 1 4.3894 2.2256 5.2622 39 1 2.4504 0.4667 6.8431 40 1 4.2187 0.3142 6.9694 41 1 3.7489 3.4508 11.1306 42 1 2.4929 3.7613 8.5642 43 1 1.7100 2.2013 8.8812 44 1 -0.4411 4.3429 6.5331 45 1 -0.2931 3.8726 8.2435 46 1 0.8127 5.0857 7.5551 47 1 1.1475 0.9811 6.3968 48 1 -0.1060 1.4809 7.5575 49 1 -0.2398 1.9516 5.8465 50 1 2.9217 3.9674 6.0185 51 1 1.3875 4.1574 5.1358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089547912.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:38 Heat of formation + Delta-G solvation = 25.874610 kcal Electronic energy + Delta-G solvation = -30652.093758 eV Core-core repulsion = 26780.313788 eV Total energy + Delta-G solvation = -3871.779970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.22088 -41.37697 -39.64371 -36.49992 -35.87916 -35.09537 -33.85777 -33.03814 -31.76314 -29.98265 -28.86606 -28.23425 -27.35525 -25.91549 -25.16431 -23.97031 -23.31404 -22.13820 -21.26208 -20.76505 -19.88832 -19.13256 -18.52836 -17.52538 -17.20257 -16.83947 -16.60153 -16.03988 -15.87724 -15.55965 -15.33267 -15.32680 -15.00391 -14.76643 -14.52060 -14.33866 -14.22442 -14.11187 -13.83507 -13.35179 -13.28397 -13.00494 -13.00239 -12.88052 -12.64291 -12.39220 -12.29069 -12.15628 -12.02424 -11.96516 -11.80305 -11.64594 -11.56147 -11.37879 -11.09720 -11.00963 -10.80307 -10.78445 -10.45313 -10.12883 -9.49780 -8.62124 -7.83530 -5.29859 0.29420 1.44442 1.47628 1.56734 1.88628 1.92030 2.19280 2.29944 2.52050 3.28980 3.52815 3.66951 3.71470 3.83074 4.02834 4.07954 4.14100 4.21139 4.22932 4.40471 4.43291 4.52012 4.57630 4.68511 4.72359 4.73170 4.77734 4.81404 4.83419 4.85018 4.97332 5.03073 5.09963 5.13637 5.18473 5.22257 5.27364 5.28571 5.32102 5.40303 5.48359 5.52986 5.56312 5.57524 5.67663 5.73511 5.87267 6.35923 6.42831 6.50643 6.94954 7.16108 7.21153 7.97080 8.36925 9.20928 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016982 B = 0.003112 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.391589 B = 8994.947734 C = 9523.710967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.051 4.051 3 C 0.083 3.917 4 N -0.534 5.534 5 C 0.238 3.762 6 N -0.542 5.542 7 H 0.439 0.561 8 C -0.106 4.106 9 C 0.591 3.409 10 O -0.556 6.556 11 N -0.714 5.714 12 C 0.151 3.849 13 H 0.093 0.907 14 C -0.135 4.135 15 C 0.149 3.851 16 N -0.599 5.599 17 C -0.262 4.262 18 H 0.061 0.939 19 C -0.044 4.044 20 N -0.931 5.931 21 Si 0.959 3.041 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.296 1.296 25 C 0.206 3.794 26 C -0.083 4.083 27 C -0.126 4.126 28 C -0.148 4.148 29 C -0.091 4.091 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.263 0.737 36 H 0.403 0.597 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.033 0.967 41 H 0.248 0.752 42 H 0.041 0.959 43 H -0.010 1.010 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.063 0.937 48 H 0.046 0.954 49 H 0.063 0.937 50 H 0.056 0.944 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.683 4.548 -20.332 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.052 4.052 4 N -0.254 5.254 5 C -0.046 4.046 6 N -0.148 5.148 7 H 0.281 0.719 8 C -0.222 4.222 9 C 0.378 3.622 10 O -0.434 6.434 11 N -0.364 5.364 12 C 0.048 3.952 13 H 0.110 0.890 14 C -0.176 4.176 15 C 0.022 3.978 16 N -0.320 5.320 17 C -0.392 4.392 18 H 0.079 0.921 19 C -0.239 4.239 20 N -0.577 5.577 21 Si 0.788 3.212 22 H -0.193 1.193 23 H -0.216 1.216 24 H -0.224 1.224 25 C 0.081 3.919 26 C -0.085 4.085 27 C -0.184 4.184 28 C -0.205 4.205 29 C -0.129 4.129 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.278 0.722 36 H 0.238 0.762 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.008 0.992 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.065 0.935 49 H 0.082 0.918 50 H 0.075 0.925 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.092 3.534 -20.730 21.894 hybrid contribution 1.450 1.434 1.933 2.810 sum -4.642 4.968 -18.797 19.989 Atomic orbital electron populations 1.21532 0.93783 1.02374 1.00962 1.20030 0.96768 0.89023 1.03076 1.21197 0.99208 0.97403 0.87354 1.70122 1.20312 1.04281 1.30658 1.26079 0.98469 0.97709 0.82335 1.43274 1.49880 1.12507 1.09099 0.71927 1.20762 1.17532 0.89724 0.94194 1.17053 0.77182 0.84705 0.83263 1.90797 1.48180 1.21065 1.83390 1.46143 1.67429 1.16677 1.06145 1.20130 0.98971 0.97425 0.78680 0.88965 1.21614 0.98009 0.99612 0.98381 1.20922 0.99064 0.89455 0.88409 1.43826 1.03419 1.34455 1.50306 1.19458 0.87347 1.34289 0.98145 0.92122 1.25692 0.99837 1.02991 0.95430 1.70229 1.33340 1.46838 1.07319 0.85342 0.80040 0.78281 0.77575 1.19344 1.21600 1.22365 1.20808 0.84712 0.95140 0.91207 1.20800 0.95708 0.96132 0.95883 1.21754 0.98146 0.97047 1.01436 1.22298 0.99694 0.97504 1.00966 1.21172 1.00394 0.96191 0.95107 0.92633 0.90977 0.94172 0.90131 0.90453 0.72170 0.76205 0.92877 0.93171 0.92920 0.94891 0.94281 0.94071 0.99188 0.90839 0.93258 0.93261 0.91833 0.93463 0.91806 0.92486 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.89 71.98 0.71 -2.09 16 2 C -0.05 -1.22 5.93 29.85 0.18 -1.04 16 3 C 0.08 2.04 6.40 41.97 0.27 2.31 16 4 N -0.53 -11.56 11.20 -187.58 -2.10 -13.66 16 5 C 0.24 3.02 13.01 180.33 2.35 5.37 16 6 N -0.54 -7.14 6.07 -188.03 -1.14 -8.28 16 7 H 0.44 2.65 8.32 -92.71 -0.77 1.88 16 8 C -0.11 -2.40 7.08 40.01 0.28 -2.12 16 9 C 0.59 16.04 7.63 86.47 0.66 16.70 16 10 O -0.56 -18.85 14.32 -4.27 -0.06 -18.91 16 11 N -0.71 -17.09 4.88 -455.97 -2.22 -19.31 16 12 C 0.15 4.53 1.79 43.01 0.08 4.61 16 13 H 0.09 3.02 3.94 -2.39 -0.01 3.01 16 14 C -0.13 -4.73 5.20 29.39 0.15 -4.58 16 15 C 0.15 6.19 5.58 87.36 0.49 6.68 16 16 N -0.60 -28.62 2.27 -698.18 -1.58 -30.21 16 17 C -0.26 -13.93 9.44 84.04 0.79 -13.14 16 18 H 0.06 3.21 7.88 -2.91 -0.02 3.19 16 19 C -0.04 -2.38 4.84 84.86 0.41 -1.97 16 20 N -0.93 -53.80 11.11 21.65 0.24 -53.56 16 21 Si 0.96 43.97 29.58 68.60 2.03 46.00 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 24 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 25 C 0.21 9.43 3.56 86.49 0.31 9.74 16 26 C -0.08 -2.81 0.75 -52.55 -0.04 -2.85 16 27 C -0.13 -3.66 8.15 71.98 0.59 -3.07 16 28 C -0.15 -4.69 6.75 71.98 0.49 -4.20 16 29 C -0.09 -2.72 4.39 29.76 0.13 -2.59 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 2.13 6.48 -2.39 -0.02 2.12 16 35 H 0.26 0.41 8.06 -2.91 -0.02 0.39 16 36 H 0.40 7.02 7.86 -92.71 -0.73 6.29 16 37 H 0.05 1.87 7.96 -2.39 -0.02 1.85 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 2.13 5.19 -2.39 -0.01 2.11 16 40 H 0.03 1.44 7.99 -2.39 -0.02 1.42 16 41 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 42 H 0.04 2.13 6.23 -2.39 -0.01 2.11 16 43 H -0.01 -0.52 7.86 -2.39 -0.02 -0.54 16 44 H 0.07 1.71 8.09 -2.38 -0.02 1.69 16 45 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.05 1.46 8.13 -2.39 -0.02 1.44 16 47 H 0.06 2.18 3.13 -2.38 -0.01 2.17 16 48 H 0.05 1.50 8.12 -2.39 -0.02 1.49 16 49 H 0.06 1.76 7.90 -2.39 -0.02 1.74 16 50 H 0.06 2.00 7.48 -2.39 -0.02 1.98 16 51 H 0.08 1.97 7.64 -2.38 -0.02 1.95 16 Total: -1.00 -71.35 386.59 2.46 -68.89 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.54 Total: 21.29 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 7.84 Total: 7.74 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -6.81 Total: -125.02 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.06 Total: -18.91 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.35 2.46 -68.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089547912.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.770 kcal (2) G-P(sol) polarization free energy of solvation -71.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds