Wall clock time and date at job start Tue Mar 31 2020 18:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47351 * 2 1 4 4 C 1.35357 * 126.38761 * 274.71146 * 3 2 1 5 5 C 1.41508 * 105.50195 * 179.89432 * 4 3 2 6 6 C 1.47708 * 126.51868 * 180.16850 * 5 4 3 7 7 O 1.21573 * 120.00082 * 0.26886 * 6 5 4 8 8 N 1.34770 * 120.00062 * 180.26096 * 6 5 4 9 9 C 1.46509 * 119.99929 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46779 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.59047 * 59.62702 * 10 9 8 12 12 C 1.53197 * 109.58509 * 179.91081 * 10 9 8 13 13 C 1.53036 * 109.31324 * 174.42324 * 12 10 9 14 14 C 1.53042 * 109.53643 * 298.63316 * 13 12 10 15 15 C 1.53008 * 109.49760 * 181.31783 * 14 13 12 16 16 C 1.53000 * 109.50018 * 301.37971 * 14 13 12 17 17 C 1.53188 * 109.31252 * 61.36946 * 14 13 12 18 18 N 1.46924 * 109.58915 * 299.19515 * 10 9 8 19 19 C 1.36939 * 120.62924 * 6.63312 * 18 10 9 20 20 H 1.08003 * 120.00068 * 328.31951 * 19 18 10 21 21 C 1.38817 * 120.00059 * 148.32623 * 19 18 10 22 22 N 1.31618 * 120.00122 * 345.35905 * 21 19 18 23 23 Si 1.86799 * 120.00054 * 165.36135 * 21 19 18 24 24 H 1.48506 * 109.46858 * 89.99904 * 23 21 19 25 25 H 1.48489 * 109.47222 * 209.99777 * 23 21 19 26 26 H 1.48498 * 109.47204 * 330.00049 * 23 21 19 27 27 N 1.31800 * 106.96486 * 0.37584 * 5 4 3 28 28 N 1.28472 * 110.07356 * 359.75961 * 27 5 4 29 29 H 0.97003 * 124.88647 * 180.02562 * 28 27 5 30 30 H 1.08993 * 109.46823 * 299.99761 * 1 2 3 31 31 H 1.08999 * 109.46928 * 59.99555 * 1 2 3 32 32 H 1.08995 * 109.47233 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47327 * 239.99967 * 2 1 3 34 34 H 1.08999 * 109.46928 * 120.00445 * 2 1 3 35 35 H 1.08003 * 127.25197 * 0.02562 * 4 3 2 36 36 H 0.96992 * 120.00495 * 0.02562 * 8 6 5 37 37 H 1.08998 * 109.47245 * 300.00256 * 9 8 6 38 38 H 1.09000 * 109.46687 * 60.00634 * 9 8 6 39 39 H 1.09000 * 109.49418 * 294.37179 * 12 10 9 40 40 H 1.08996 * 109.49491 * 54.43734 * 12 10 9 41 41 H 1.09000 * 109.46161 * 58.65475 * 13 12 10 42 42 H 1.08997 * 109.46066 * 178.62741 * 13 12 10 43 43 H 1.09003 * 109.47148 * 59.99605 * 15 14 13 44 44 H 1.08990 * 109.47112 * 180.02562 * 15 14 13 45 45 H 1.09007 * 109.46819 * 300.00406 * 15 14 13 46 46 H 1.09008 * 109.46663 * 59.99996 * 16 14 13 47 47 H 1.08997 * 109.46934 * 179.97438 * 16 14 13 48 48 H 1.08995 * 109.47129 * 300.00368 * 16 14 13 49 49 H 1.09003 * 109.59022 * 65.14965 * 17 14 13 50 50 H 1.09006 * 109.58854 * 185.43409 * 17 14 13 51 51 H 0.96994 * 120.00469 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2157 2.2077 -1.0860 5 6 2.6932 3.4412 -0.5830 6 6 3.0422 4.6377 -1.3756 7 8 2.9234 4.6213 -2.5854 8 7 3.4922 5.7476 -0.7577 9 6 3.8379 6.9346 -1.5439 10 6 4.3185 8.0446 -0.6070 11 1 5.1931 7.7026 -0.0536 12 6 4.6828 9.2865 -1.4267 13 6 5.0291 10.4358 -0.4774 14 6 3.8119 10.7687 0.3886 15 6 4.1486 11.9394 1.3144 16 6 2.6345 11.1510 -0.5105 17 6 3.4378 9.5437 1.2289 18 7 3.2445 8.3962 0.3318 19 6 2.0855 7.6678 0.3706 20 1 1.7079 7.2054 -0.5295 21 6 1.3959 7.5237 1.5667 22 7 1.9819 7.8287 2.7051 23 14 -0.3637 6.8968 1.5606 24 1 -0.3619 5.4158 1.6705 25 1 -1.1001 7.4776 2.7119 26 1 -1.0280 7.2985 0.2947 27 7 2.7715 3.3179 0.7269 28 7 2.3892 2.1442 1.0830 29 1 2.3606 1.8239 1.9982 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0337 1.9494 -2.1187 36 1 3.5873 5.7607 0.2074 37 1 4.6313 6.6854 -2.2485 38 1 2.9595 7.2760 -2.0917 39 1 5.5426 9.0656 -2.0592 40 1 3.8359 9.5719 -2.0506 41 1 5.8603 10.1403 0.1628 42 1 5.3123 11.3137 -1.0581 43 1 4.4177 12.8100 0.7162 44 1 3.2817 12.1758 1.9313 45 1 4.9868 11.6661 1.9556 46 1 2.3943 10.3163 -1.1691 47 1 1.7679 11.3875 0.1067 48 1 2.9026 12.0211 -1.1098 49 1 4.2398 9.3253 1.9340 50 1 2.5155 9.7428 1.7748 51 1 1.5002 7.7277 3.5409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089608889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:12 Heat of formation + Delta-G solvation = 41.264215 kcal Electronic energy + Delta-G solvation = -30534.591631 eV Core-core repulsion = 26663.479004 eV Total energy + Delta-G solvation = -3871.112627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.82 seconds Orbital eigenvalues (eV) -42.42964 -39.08422 -38.16540 -34.98725 -34.36282 -33.10538 -32.15843 -31.44965 -29.93638 -29.26228 -27.43203 -26.56839 -25.41284 -24.28339 -23.82958 -22.48211 -22.04431 -20.88057 -20.02424 -19.21153 -17.85512 -17.49855 -16.77715 -15.91320 -15.66366 -15.29058 -15.11955 -14.54795 -14.20007 -14.05256 -13.87053 -13.71921 -13.56699 -13.36823 -13.24170 -13.10638 -12.82840 -12.52510 -12.33636 -12.11616 -11.74631 -11.59691 -11.35432 -11.33680 -11.23257 -11.10365 -10.81711 -10.72761 -10.58535 -10.46265 -10.36817 -10.06422 -10.03081 -9.74901 -9.54686 -9.36287 -9.19085 -9.11879 -8.78815 -8.49110 -8.11152 -6.55846 -5.77450 -3.22178 1.98138 2.32730 3.05111 3.37081 3.43697 3.48684 3.87944 4.05000 4.50175 4.58087 4.71066 4.92930 5.07686 5.25890 5.34804 5.36934 5.49948 5.50745 5.56205 5.60874 5.65686 5.77145 5.81506 5.83622 5.95092 5.99314 6.08680 6.09762 6.17063 6.22062 6.28881 6.37952 6.41928 6.50443 6.51763 6.53184 6.57979 6.62663 6.70630 6.95119 7.00034 7.07587 7.16507 7.17264 7.27533 7.42927 7.69989 7.87651 8.06778 8.45195 8.48516 8.95254 9.23922 9.85308 10.43571 11.29822 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.003770 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.707495 B = 7425.922220 C = 8484.515418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.050 4.050 3 C 0.004 3.996 4 C -0.179 4.179 5 C -0.002 4.002 6 C 0.593 3.407 7 O -0.559 6.559 8 N -0.678 5.678 9 C 0.134 3.866 10 C 0.160 3.840 11 H 0.031 0.969 12 C -0.130 4.130 13 C -0.095 4.095 14 C -0.095 4.095 15 C -0.133 4.133 16 C -0.124 4.124 17 C 0.189 3.811 18 N -0.584 5.584 19 C -0.247 4.247 20 H 0.068 0.932 21 C 0.016 3.984 22 N -0.897 5.897 23 Si 0.889 3.111 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.280 1.280 27 N -0.240 5.240 28 N -0.383 5.383 29 H 0.441 0.559 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.422 0.578 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.041 0.959 44 H 0.050 0.950 45 H 0.047 0.953 46 H 0.066 0.934 47 H 0.044 0.956 48 H 0.030 0.970 49 H 0.017 0.983 50 H 0.083 0.917 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 -8.097 -2.817 8.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 C -0.121 4.121 4 C -0.208 4.208 5 C -0.164 4.164 6 C 0.377 3.623 7 O -0.438 6.438 8 N -0.328 5.328 9 C 0.010 3.990 10 C 0.053 3.947 11 H 0.048 0.952 12 C -0.169 4.169 13 C -0.133 4.133 14 C -0.097 4.097 15 C -0.191 4.191 16 C -0.181 4.181 17 C 0.063 3.937 18 N -0.307 5.307 19 C -0.377 4.377 20 H 0.085 0.915 21 C -0.184 4.184 22 N -0.540 5.540 23 Si 0.719 3.281 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 N -0.076 5.076 28 N -0.097 5.097 29 H 0.285 0.715 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.176 0.824 36 H 0.260 0.740 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.063 0.937 48 H 0.049 0.951 49 H 0.035 0.965 50 H 0.101 0.899 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.893 -7.478 -2.571 8.421 hybrid contribution -1.261 -0.834 0.507 1.595 sum 1.632 -8.312 -2.064 8.719 Atomic orbital electron populations 1.21792 0.94239 1.01936 1.02866 1.20061 0.96300 0.88950 1.03616 1.21381 1.06361 0.96812 0.87590 1.21448 1.07309 0.92532 0.99466 1.22075 1.07699 0.96827 0.89796 1.16870 0.77782 0.81526 0.86126 1.90717 1.56057 1.83635 1.13368 1.45890 1.63217 1.11169 1.12528 1.21336 0.99569 0.84593 0.93530 1.20727 0.91913 0.91286 0.90743 0.95158 1.22005 1.00340 0.96574 0.98023 1.21403 0.97467 0.97012 0.97395 1.21248 0.94810 0.97288 0.96352 1.21759 1.00875 0.97412 0.99059 1.21700 0.97340 0.99890 0.99208 1.20765 1.00372 0.82778 0.89764 1.44013 1.14193 1.30787 1.41717 1.19089 0.98408 1.27187 0.92971 0.91480 1.24980 0.98360 0.99652 0.95381 1.70003 1.35379 1.51991 0.96667 0.86499 0.85933 0.78593 0.77045 1.21578 1.21797 1.20567 1.73765 1.17180 1.01487 1.15130 1.43354 1.47918 1.08821 1.09646 0.71493 0.92655 0.91837 0.91955 0.89259 0.90884 0.82413 0.73967 0.92566 0.91419 0.93130 0.91596 0.92963 0.93685 0.93992 0.93091 0.93365 0.91522 0.93693 0.95081 0.96508 0.89898 0.93822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.90 37.16 0.37 -0.89 16 2 C -0.05 -0.42 6.49 -27.88 -0.18 -0.60 16 3 C 0.00 0.05 6.48 -82.21 -0.53 -0.48 16 4 C -0.18 -2.84 10.73 -39.36 -0.42 -3.26 16 5 C 0.00 -0.05 7.13 -82.77 -0.59 -0.64 16 6 C 0.59 12.51 7.82 -12.39 -0.10 12.41 16 7 O -0.56 -12.70 16.93 5.30 0.09 -12.61 16 8 N -0.68 -14.12 3.88 -61.29 -0.24 -14.35 16 9 C 0.13 2.62 4.43 -4.04 -0.02 2.60 16 10 C 0.16 3.14 3.00 -67.60 -0.20 2.94 16 11 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 12 C -0.13 -2.18 5.03 -26.61 -0.13 -2.32 16 13 C -0.10 -1.57 4.71 -26.69 -0.13 -1.69 16 14 C -0.10 -1.72 0.77 -154.39 -0.12 -1.84 16 15 C -0.13 -2.13 8.48 37.16 0.32 -1.82 16 16 C -0.12 -2.24 7.99 37.16 0.30 -1.95 16 17 C 0.19 4.21 3.94 -3.71 -0.01 4.20 16 18 N -0.58 -13.27 2.41 -164.77 -0.40 -13.66 16 19 C -0.25 -6.24 6.98 -15.06 -0.11 -6.34 16 20 H 0.07 1.77 5.90 -52.48 -0.31 1.47 16 21 C 0.02 0.42 4.95 -17.43 -0.09 0.33 16 22 N -0.90 -24.64 11.32 55.49 0.63 -24.01 16 23 Si 0.89 21.92 29.58 -169.99 -5.03 16.89 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 N -0.24 -4.41 11.92 33.42 0.40 -4.01 16 28 N -0.38 -5.33 6.83 33.50 0.23 -5.10 16 29 H 0.44 4.51 8.96 -190.44 -1.71 2.80 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.16 2.28 8.06 -52.48 -0.42 1.86 16 36 H 0.42 9.40 7.17 -40.82 -0.29 9.10 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.43 7.38 -51.93 -0.38 1.04 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.14 6.34 -51.93 -0.33 0.82 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 1.31 5.98 -51.92 -0.31 1.00 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.08 2.11 6.27 -51.93 -0.33 1.78 16 51 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -30.50 397.64 -9.95 -40.46 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -9.98 Total: 9.76 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.65 Total: 0.64 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: 0.62 Total: -61.13 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.50 -9.95 -40.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089608889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.719 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.82 seconds