Wall clock time and date at job start Tue Mar 31 2020 18:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47351 * 2 1 4 4 C 1.35357 * 126.38761 * 274.71146 * 3 2 1 5 5 C 1.41508 * 105.50195 * 179.89432 * 4 3 2 6 6 C 1.47708 * 126.51868 * 180.16850 * 5 4 3 7 7 O 1.21573 * 120.00082 * 0.26886 * 6 5 4 8 8 N 1.34770 * 120.00062 * 180.26096 * 6 5 4 9 9 C 1.46509 * 119.99929 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46779 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.59047 * 59.62702 * 10 9 8 12 12 C 1.53197 * 109.58509 * 179.91081 * 10 9 8 13 13 C 1.53036 * 109.31324 * 174.42324 * 12 10 9 14 14 C 1.53042 * 109.53643 * 298.63316 * 13 12 10 15 15 C 1.53008 * 109.49760 * 181.31783 * 14 13 12 16 16 C 1.53000 * 109.50018 * 301.37971 * 14 13 12 17 17 C 1.53188 * 109.31252 * 61.36946 * 14 13 12 18 18 N 1.46924 * 109.58915 * 299.19515 * 10 9 8 19 19 C 1.36939 * 120.62924 * 6.63312 * 18 10 9 20 20 H 1.08003 * 120.00068 * 328.31951 * 19 18 10 21 21 C 1.38817 * 120.00059 * 148.32623 * 19 18 10 22 22 N 1.31618 * 120.00122 * 345.35905 * 21 19 18 23 23 Si 1.86799 * 120.00054 * 165.36135 * 21 19 18 24 24 H 1.48506 * 109.46858 * 89.99904 * 23 21 19 25 25 H 1.48489 * 109.47222 * 209.99777 * 23 21 19 26 26 H 1.48498 * 109.47204 * 330.00049 * 23 21 19 27 27 N 1.31800 * 106.96486 * 0.37584 * 5 4 3 28 28 N 1.28472 * 110.07356 * 359.75961 * 27 5 4 29 29 H 0.97003 * 124.88647 * 180.02562 * 28 27 5 30 30 H 1.08993 * 109.46823 * 299.99761 * 1 2 3 31 31 H 1.08999 * 109.46928 * 59.99555 * 1 2 3 32 32 H 1.08995 * 109.47233 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47327 * 239.99967 * 2 1 3 34 34 H 1.08999 * 109.46928 * 120.00445 * 2 1 3 35 35 H 1.08003 * 127.25197 * 0.02562 * 4 3 2 36 36 H 0.96992 * 120.00495 * 0.02562 * 8 6 5 37 37 H 1.08998 * 109.47245 * 300.00256 * 9 8 6 38 38 H 1.09000 * 109.46687 * 60.00634 * 9 8 6 39 39 H 1.09000 * 109.49418 * 294.37179 * 12 10 9 40 40 H 1.08996 * 109.49491 * 54.43734 * 12 10 9 41 41 H 1.09000 * 109.46161 * 58.65475 * 13 12 10 42 42 H 1.08997 * 109.46066 * 178.62741 * 13 12 10 43 43 H 1.09003 * 109.47148 * 59.99605 * 15 14 13 44 44 H 1.08990 * 109.47112 * 180.02562 * 15 14 13 45 45 H 1.09007 * 109.46819 * 300.00406 * 15 14 13 46 46 H 1.09008 * 109.46663 * 59.99996 * 16 14 13 47 47 H 1.08997 * 109.46934 * 179.97438 * 16 14 13 48 48 H 1.08995 * 109.47129 * 300.00368 * 16 14 13 49 49 H 1.09003 * 109.59022 * 65.14965 * 17 14 13 50 50 H 1.09006 * 109.58854 * 185.43409 * 17 14 13 51 51 H 0.96994 * 120.00469 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2157 2.2077 -1.0860 5 6 2.6932 3.4412 -0.5830 6 6 3.0422 4.6377 -1.3756 7 8 2.9234 4.6213 -2.5854 8 7 3.4922 5.7476 -0.7577 9 6 3.8379 6.9346 -1.5439 10 6 4.3185 8.0446 -0.6070 11 1 5.1931 7.7026 -0.0536 12 6 4.6828 9.2865 -1.4267 13 6 5.0291 10.4358 -0.4774 14 6 3.8119 10.7687 0.3886 15 6 4.1486 11.9394 1.3144 16 6 2.6345 11.1510 -0.5105 17 6 3.4378 9.5437 1.2289 18 7 3.2445 8.3962 0.3318 19 6 2.0855 7.6678 0.3706 20 1 1.7079 7.2054 -0.5295 21 6 1.3959 7.5237 1.5667 22 7 1.9819 7.8287 2.7051 23 14 -0.3637 6.8968 1.5606 24 1 -0.3619 5.4158 1.6705 25 1 -1.1001 7.4776 2.7119 26 1 -1.0280 7.2985 0.2947 27 7 2.7715 3.3179 0.7269 28 7 2.3892 2.1442 1.0830 29 1 2.3606 1.8239 1.9982 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0337 1.9494 -2.1187 36 1 3.5873 5.7607 0.2074 37 1 4.6313 6.6854 -2.2485 38 1 2.9595 7.2760 -2.0917 39 1 5.5426 9.0656 -2.0592 40 1 3.8359 9.5719 -2.0506 41 1 5.8603 10.1403 0.1628 42 1 5.3123 11.3137 -1.0581 43 1 4.4177 12.8100 0.7162 44 1 3.2817 12.1758 1.9313 45 1 4.9868 11.6661 1.9556 46 1 2.3943 10.3163 -1.1691 47 1 1.7679 11.3875 0.1067 48 1 2.9026 12.0211 -1.1098 49 1 4.2398 9.3253 1.9340 50 1 2.5155 9.7428 1.7748 51 1 1.5002 7.7277 3.5409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089608889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:03 Heat of formation + Delta-G solvation = 22.780964 kcal Electronic energy + Delta-G solvation = -30535.393125 eV Core-core repulsion = 26663.479004 eV Total energy + Delta-G solvation = -3871.914121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 6.23 seconds Orbital eigenvalues (eV) -43.66500 -40.71512 -39.76924 -36.60857 -35.24485 -34.95545 -33.71989 -32.76523 -31.73913 -30.33087 -28.92228 -27.99744 -27.30559 -25.77783 -24.67791 -24.16735 -23.49871 -22.02765 -21.69311 -20.75194 -19.45694 -18.61881 -18.43791 -17.55012 -17.26877 -16.72417 -16.71515 -16.05099 -15.66761 -15.34270 -15.29022 -15.20292 -14.99879 -14.74135 -14.69104 -14.50236 -14.21063 -13.88705 -13.76140 -13.33595 -13.12441 -13.02275 -12.84666 -12.73996 -12.52326 -12.51061 -12.48841 -12.24711 -12.12307 -12.06818 -11.87292 -11.67319 -11.63371 -11.25374 -11.17918 -10.91398 -10.83699 -10.49624 -10.43838 -9.95374 -9.80787 -8.48612 -7.80899 -5.25155 0.58931 1.13525 1.34488 1.38389 1.45106 1.94069 2.37215 2.48895 2.51929 3.34733 3.48821 3.61940 3.69202 4.00720 4.03720 4.05856 4.21674 4.33809 4.34906 4.40247 4.46251 4.53689 4.55081 4.67030 4.71419 4.77709 4.80938 4.88723 4.94540 4.97937 5.04040 5.07377 5.12085 5.15640 5.17925 5.19015 5.27636 5.32451 5.39483 5.41270 5.49769 5.55458 5.60003 5.66033 5.73822 5.83708 5.90415 6.14020 6.47623 6.61982 6.94241 7.23880 7.28764 7.92809 8.45944 9.23454 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.003770 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.707495 B = 7425.922220 C = 8484.515418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C 0.033 3.967 4 C -0.201 4.201 5 C -0.035 4.035 6 C 0.589 3.411 7 O -0.583 6.583 8 N -0.681 5.681 9 C 0.137 3.863 10 C 0.160 3.840 11 H 0.027 0.973 12 C -0.123 4.123 13 C -0.091 4.091 14 C -0.092 4.092 15 C -0.128 4.128 16 C -0.117 4.117 17 C 0.198 3.802 18 N -0.594 5.594 19 C -0.225 4.225 20 H 0.054 0.946 21 C -0.025 4.025 22 N -0.920 5.920 23 Si 0.929 3.071 24 H -0.296 1.296 25 H -0.293 1.293 26 H -0.284 1.284 27 N -0.275 5.275 28 N -0.370 5.370 29 H 0.457 0.543 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.166 0.834 36 H 0.413 0.587 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.041 0.959 45 H 0.050 0.950 46 H 0.046 0.954 47 H 0.028 0.972 48 H 0.061 0.939 49 H -0.007 1.007 50 H 0.046 0.954 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.588 -8.718 -3.683 10.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 C -0.094 4.094 4 C -0.229 4.229 5 C -0.195 4.195 6 C 0.374 3.626 7 O -0.463 6.463 8 N -0.330 5.330 9 C 0.013 3.987 10 C 0.054 3.946 11 H 0.045 0.955 12 C -0.162 4.162 13 C -0.128 4.128 14 C -0.094 4.094 15 C -0.186 4.186 16 C -0.174 4.174 17 C 0.072 3.928 18 N -0.318 5.318 19 C -0.355 4.355 20 H 0.072 0.928 21 C -0.221 4.221 22 N -0.567 5.567 23 Si 0.760 3.240 24 H -0.224 1.224 25 H -0.219 1.219 26 H -0.210 1.210 27 N -0.111 5.111 28 N -0.086 5.086 29 H 0.304 0.696 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.184 0.816 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.047 0.953 48 H 0.080 0.920 49 H 0.011 0.989 50 H 0.065 0.935 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.757 -8.086 -3.442 9.557 hybrid contribution -1.522 -0.736 0.765 1.855 sum 2.235 -8.821 -2.678 9.486 Atomic orbital electron populations 1.21797 0.94002 1.03316 1.01701 1.20296 0.96238 0.85959 1.06057 1.22008 1.03297 0.98096 0.86001 1.21682 1.08386 0.91948 1.00884 1.21982 1.09822 0.97260 0.90400 1.17216 0.77126 0.82112 0.86121 1.90677 1.57139 1.84232 1.14279 1.45946 1.63337 1.11675 1.12037 1.21370 0.99364 0.84343 0.93599 1.20875 0.90533 0.92843 0.90326 0.95540 1.21944 1.01405 0.95018 0.97873 1.21386 0.96291 0.97937 0.97199 1.21153 0.95865 0.95917 0.96432 1.21705 1.00604 0.97366 0.98894 1.21621 0.96735 1.00281 0.98814 1.20560 0.97700 0.84621 0.89918 1.44163 1.14449 1.30991 1.42177 1.19021 0.98901 1.25624 0.91984 0.92803 1.25338 1.00253 1.01047 0.95501 1.70098 1.35900 1.53984 0.96669 0.85866 0.83998 0.77614 0.76481 1.22366 1.21911 1.21026 1.73669 1.18762 1.03679 1.15010 1.43456 1.46475 1.07784 1.10929 0.69597 0.93641 0.93243 0.89332 0.87315 0.87951 0.81613 0.74941 0.90543 0.93208 0.90110 0.91936 0.92851 0.90612 0.91171 0.94029 0.93133 0.93518 0.95264 0.92031 0.98910 0.93542 0.94522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.90 71.98 0.71 -1.40 16 2 C -0.05 -0.63 6.49 29.85 0.19 -0.44 16 3 C 0.03 0.78 6.48 41.40 0.27 1.05 16 4 C -0.20 -6.30 10.73 22.41 0.24 -6.06 16 5 C -0.03 -1.36 7.13 42.46 0.30 -1.05 16 6 C 0.59 25.63 7.82 86.75 0.68 26.31 16 7 O -0.58 -27.15 16.93 -3.95 -0.07 -27.22 16 8 N -0.68 -29.29 3.88 -466.09 -1.81 -31.10 16 9 C 0.14 5.41 4.43 86.38 0.38 5.79 16 10 C 0.16 6.24 3.00 44.98 0.14 6.37 16 11 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 12 C -0.12 -3.87 5.03 30.67 0.15 -3.72 16 13 C -0.09 -2.72 4.71 30.62 0.14 -2.57 16 14 C -0.09 -3.22 0.77 -52.10 -0.04 -3.26 16 15 C -0.13 -3.84 8.48 71.98 0.61 -3.23 16 16 C -0.12 -4.08 7.99 71.98 0.57 -3.51 16 17 C 0.20 9.00 3.94 86.36 0.34 9.34 16 18 N -0.59 -27.57 2.41 -675.21 -1.63 -29.20 16 19 C -0.22 -11.71 6.98 84.03 0.59 -11.12 16 20 H 0.05 2.96 5.90 -2.91 -0.02 2.94 16 21 C -0.02 -1.36 4.95 84.86 0.42 -0.94 16 22 N -0.92 -52.54 11.32 21.65 0.25 -52.30 16 23 Si 0.93 46.50 29.58 68.60 2.03 48.53 16 24 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 25 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 26 H -0.28 -14.25 7.11 99.48 0.71 -13.55 16 27 N -0.27 -10.23 11.92 -48.18 -0.57 -10.80 16 28 N -0.37 -9.95 6.83 -47.93 -0.33 -10.28 16 29 H 0.46 8.69 8.96 -219.99 -1.97 6.71 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.17 4.76 8.06 -2.91 -0.02 4.74 16 36 H 0.41 19.20 7.17 -92.71 -0.66 18.53 16 37 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.05 2.14 7.38 -2.39 -0.02 2.13 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.06 2.04 6.34 -2.39 -0.02 2.03 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.05 1.80 5.98 -2.38 -0.01 1.79 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 49 H -0.01 -0.36 8.14 -2.39 -0.02 -0.37 16 50 H 0.05 2.45 6.27 -2.38 -0.01 2.44 16 51 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -69.54 397.64 1.88 -67.66 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -1.70 Total: 33.14 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 5.70 Total: 11.56 kcal Atomic # 7 Polarization: -129.58 SS G_CDS: -4.09 Total: -133.67 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.07 Total: -27.22 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -69.54 1.88 -67.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089608889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.442 kcal (2) G-P(sol) polarization free energy of solvation -69.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.23 seconds