Wall clock time and date at job start Tue Mar 31 2020 18:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.46967 * 2 1 4 4 C 1.35373 * 126.38414 * 85.00287 * 3 2 1 5 5 C 1.41501 * 105.50258 * 179.97438 * 4 3 2 6 6 C 1.47714 * 126.51743 * 179.97438 * 5 4 3 7 7 O 1.21569 * 120.00047 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99773 * 179.71943 * 6 5 4 9 9 C 1.46495 * 119.99797 * 179.97438 * 8 6 5 10 10 C 1.53007 * 109.46965 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.58219 * 299.91585 * 10 9 8 12 12 C 1.53190 * 109.58522 * 179.63900 * 10 9 8 13 13 C 1.53075 * 109.29440 * 185.71719 * 12 10 9 14 14 C 1.53040 * 109.65374 * 61.15738 * 13 12 10 15 15 C 1.52999 * 109.49542 * 178.74948 * 14 13 12 16 16 C 1.52996 * 109.50269 * 58.64838 * 14 13 12 17 17 C 1.53190 * 109.30938 * 298.69343 * 14 13 12 18 18 N 1.46917 * 109.58649 * 60.20693 * 10 9 8 19 19 C 1.36943 * 120.63132 * 353.36999 * 18 10 9 20 20 H 1.07995 * 119.99611 * 31.03102 * 19 18 10 21 21 C 1.38811 * 119.99711 * 211.02606 * 19 18 10 22 22 N 1.31612 * 120.00495 * 14.23938 * 21 19 18 23 23 Si 1.86810 * 119.99464 * 194.23591 * 21 19 18 24 24 H 1.48500 * 109.47258 * 60.00388 * 23 21 19 25 25 H 1.48501 * 109.46866 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46900 * 300.00143 * 23 21 19 27 27 N 1.31813 * 106.96262 * 0.25682 * 5 4 3 28 28 N 1.28472 * 110.07245 * 359.56186 * 27 5 4 29 29 H 0.96993 * 124.87994 * 180.15585 * 28 27 5 30 30 H 1.09000 * 109.47410 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47401 * 299.99709 * 1 2 3 32 32 H 1.08997 * 109.47409 * 59.99911 * 1 2 3 33 33 H 1.08998 * 109.47359 * 239.99832 * 2 1 3 34 34 H 1.09005 * 109.47109 * 120.00077 * 2 1 3 35 35 H 1.07995 * 127.24699 * 359.97438 * 4 3 2 36 36 H 0.97001 * 120.00164 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.47777 * 300.00378 * 9 8 6 38 38 H 1.09000 * 109.46860 * 60.00410 * 9 8 6 39 39 H 1.08998 * 109.50068 * 305.53018 * 12 10 9 40 40 H 1.09007 * 109.49997 * 65.62474 * 12 10 9 41 41 H 1.08987 * 109.34845 * 301.12652 * 13 12 10 42 42 H 1.09004 * 109.43997 * 181.23122 * 13 12 10 43 43 H 1.09004 * 109.47135 * 179.83702 * 15 14 13 44 44 H 1.09008 * 109.46835 * 299.83597 * 15 14 13 45 45 H 1.09003 * 109.47679 * 59.83332 * 15 14 13 46 46 H 1.08997 * 109.47139 * 300.16409 * 16 14 13 47 47 H 1.09007 * 109.46963 * 60.16013 * 16 14 13 48 48 H 1.08999 * 109.47126 * 180.15565 * 16 14 13 49 49 H 1.08997 * 109.59154 * 294.85266 * 17 14 13 50 50 H 1.09009 * 109.70375 * 174.49697 * 17 14 13 51 51 H 0.97004 * 120.00060 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2104 2.2096 1.0857 5 6 2.6931 3.4412 0.5833 6 6 3.0422 4.6376 1.3761 7 8 2.9228 4.6213 2.5858 8 7 3.4979 5.7456 0.7588 9 6 3.8437 6.9324 1.5450 10 6 4.3301 8.0405 0.6087 11 1 5.2106 7.6987 0.0646 12 6 4.6839 9.2860 1.4274 13 6 5.0326 10.4340 0.4767 14 6 3.8237 10.7583 -0.4039 15 6 4.1659 11.9263 -1.3309 16 6 2.6348 11.1388 0.4807 17 6 3.4637 9.5282 -1.2430 18 7 3.2651 8.3837 -0.3434 19 6 2.1095 7.6504 -0.3917 20 1 1.7296 7.1818 0.5040 21 6 1.4266 7.5098 -1.5920 22 7 2.0141 7.8309 -2.7251 23 14 -0.3266 6.8646 -1.5989 24 1 -1.1902 7.7695 -0.7986 25 1 -0.8278 6.8084 -2.9956 26 1 -0.3550 5.5025 -1.0080 27 7 2.7660 3.3199 -0.7272 28 7 2.3892 2.1443 -1.0828 29 1 2.3607 1.8241 -1.9979 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.0235 1.9528 2.1179 36 1 3.5963 5.7575 -0.2062 37 1 2.9642 7.2769 2.0889 38 1 4.6336 6.6817 2.2530 39 1 3.8305 9.5718 2.0422 40 1 5.5384 9.0694 2.0686 41 1 5.8719 10.1391 -0.1529 42 1 5.3059 11.3153 1.0570 43 1 3.3056 12.1551 -1.9600 44 1 4.4221 12.8014 -0.7334 45 1 5.0139 11.6549 -1.9598 46 1 2.3927 10.3066 1.1417 47 1 2.8915 12.0141 1.0776 48 1 1.7733 11.3670 -0.1469 49 1 4.2743 9.3101 -1.9383 50 1 2.5461 9.7188 -1.7998 51 1 1.5369 7.7323 -3.5638 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089608891.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:29 Heat of formation + Delta-G solvation = 41.885544 kcal Electronic energy + Delta-G solvation = -30547.214861 eV Core-core repulsion = 26676.129177 eV Total energy + Delta-G solvation = -3871.085684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 8.05 seconds Orbital eigenvalues (eV) -42.42658 -39.08602 -38.16030 -34.99080 -34.36213 -33.10531 -32.15948 -31.44861 -29.92925 -29.25853 -27.42911 -26.56499 -25.41670 -24.28089 -23.82913 -22.47690 -22.04319 -20.87902 -20.02381 -19.21001 -17.85216 -17.49761 -16.77924 -15.90765 -15.66777 -15.29118 -15.11698 -14.54618 -14.19825 -14.05054 -13.86660 -13.71684 -13.56206 -13.36575 -13.24054 -13.10448 -12.82620 -12.52669 -12.34123 -12.11131 -11.74462 -11.59386 -11.35115 -11.33663 -11.23472 -11.09521 -10.79588 -10.73547 -10.59512 -10.46466 -10.35770 -10.05888 -10.03449 -9.74660 -9.54563 -9.36050 -9.19832 -9.11507 -8.78459 -8.48787 -8.10264 -6.56623 -5.77010 -3.21640 1.98324 2.32976 3.05346 3.39451 3.42348 3.47741 3.88338 4.05229 4.50268 4.58165 4.71151 4.93143 5.07696 5.25855 5.34810 5.37254 5.50079 5.50927 5.56240 5.60888 5.66021 5.77299 5.81593 5.83880 5.95296 5.99247 6.08678 6.09904 6.17022 6.22211 6.29043 6.38127 6.41993 6.50697 6.52063 6.53333 6.57856 6.62920 6.70794 6.95673 7.00129 7.07939 7.16729 7.17588 7.27705 7.43647 7.71752 7.87230 8.07000 8.45438 8.48618 8.95580 9.24141 9.85563 10.43297 11.30141 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.003776 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.360011 B = 7413.146212 C = 8474.751700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.050 4.050 3 C 0.004 3.996 4 C -0.179 4.179 5 C -0.002 4.002 6 C 0.593 3.407 7 O -0.560 6.560 8 N -0.678 5.678 9 C 0.134 3.866 10 C 0.160 3.840 11 H 0.031 0.969 12 C -0.130 4.130 13 C -0.095 4.095 14 C -0.095 4.095 15 C -0.133 4.133 16 C -0.124 4.124 17 C 0.188 3.812 18 N -0.584 5.584 19 C -0.247 4.247 20 H 0.068 0.932 21 C 0.015 3.985 22 N -0.898 5.898 23 Si 0.890 3.110 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.283 1.283 27 N -0.241 5.241 28 N -0.384 5.384 29 H 0.441 0.559 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.158 0.842 36 H 0.422 0.578 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.041 0.959 45 H 0.047 0.953 46 H 0.066 0.934 47 H 0.030 0.970 48 H 0.044 0.956 49 H 0.016 0.984 50 H 0.085 0.915 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.662 -8.116 2.844 9.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 C -0.122 4.122 4 C -0.207 4.207 5 C -0.163 4.163 6 C 0.377 3.623 7 O -0.438 6.438 8 N -0.328 5.328 9 C 0.010 3.990 10 C 0.053 3.947 11 H 0.048 0.952 12 C -0.169 4.169 13 C -0.133 4.133 14 C -0.097 4.097 15 C -0.191 4.191 16 C -0.181 4.181 17 C 0.062 3.938 18 N -0.307 5.307 19 C -0.377 4.377 20 H 0.086 0.914 21 C -0.184 4.184 22 N -0.541 5.541 23 Si 0.720 3.280 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.210 1.210 27 N -0.076 5.076 28 N -0.098 5.098 29 H 0.285 0.715 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.176 0.824 36 H 0.261 0.739 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.049 0.951 48 H 0.063 0.937 49 H 0.035 0.965 50 H 0.103 0.897 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.820 -7.505 2.589 8.425 hybrid contribution -1.263 -0.831 -0.490 1.589 sum 1.557 -8.336 2.099 8.736 Atomic orbital electron populations 1.21793 0.94241 1.01932 1.02862 1.20059 0.96290 0.88955 1.03618 1.21381 1.06342 0.96817 0.87619 1.21447 1.07222 0.92592 0.99486 1.22074 1.07631 0.96844 0.89783 1.16874 0.77789 0.81518 0.86120 1.90715 1.56153 1.83573 1.13372 1.45909 1.63023 1.11286 1.12594 1.21333 0.99566 0.84623 0.93523 1.20721 0.92007 0.91311 0.90632 0.95166 1.22011 1.00384 0.96558 0.97995 1.21406 0.97520 0.97004 0.97345 1.21242 0.94768 0.97350 0.96324 1.21757 1.00869 0.97403 0.99059 1.21697 0.97302 0.99843 0.99275 1.20795 1.00493 0.82718 0.89785 1.44016 1.14907 1.31001 1.40816 1.19081 0.98747 1.26844 0.93023 0.91426 1.24965 0.98363 0.99698 0.95366 1.69990 1.35553 1.51860 0.96744 0.86555 0.85912 0.79188 0.76307 1.21156 1.21890 1.20958 1.73769 1.17298 1.01390 1.15116 1.43350 1.48080 1.08680 1.09646 0.71498 0.91957 0.91838 0.92664 0.90878 0.89263 0.82428 0.73920 0.91465 0.92545 0.91623 0.93087 0.92986 0.93691 0.93082 0.94007 0.93366 0.91546 0.95099 0.93687 0.96545 0.89665 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.05 -0.42 6.49 -27.89 -0.18 -0.60 16 3 C 0.00 0.05 6.48 -82.21 -0.53 -0.48 16 4 C -0.18 -2.85 10.73 -39.36 -0.42 -3.27 16 5 C 0.00 -0.03 7.13 -82.76 -0.59 -0.62 16 6 C 0.59 12.55 7.82 -12.39 -0.10 12.45 16 7 O -0.56 -12.74 16.93 5.30 0.09 -12.65 16 8 N -0.68 -14.14 3.84 -61.29 -0.24 -14.38 16 9 C 0.13 2.61 4.43 -4.04 -0.02 2.60 16 10 C 0.16 3.14 3.01 -67.60 -0.20 2.94 16 11 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 12 C -0.13 -2.19 5.04 -26.59 -0.13 -2.32 16 13 C -0.10 -1.57 4.70 -26.67 -0.13 -1.69 16 14 C -0.10 -1.73 0.77 -154.39 -0.12 -1.85 16 15 C -0.13 -2.13 8.48 37.16 0.32 -1.82 16 16 C -0.12 -2.25 7.99 37.16 0.30 -1.95 16 17 C 0.19 4.19 3.95 -3.71 -0.01 4.18 16 18 N -0.58 -13.28 2.41 -164.78 -0.40 -13.67 16 19 C -0.25 -6.24 6.97 -15.06 -0.10 -6.35 16 20 H 0.07 1.78 5.85 -52.49 -0.31 1.48 16 21 C 0.02 0.41 4.96 -17.43 -0.09 0.32 16 22 N -0.90 -24.65 11.24 55.49 0.62 -24.03 16 23 Si 0.89 21.92 29.58 -169.99 -5.03 16.89 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 27 N -0.24 -4.41 11.92 33.42 0.40 -4.01 16 28 N -0.38 -5.32 6.83 33.50 0.23 -5.09 16 29 H 0.44 4.48 8.96 -190.44 -1.71 2.77 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.16 2.29 8.06 -52.49 -0.42 1.87 16 36 H 0.42 9.42 7.11 -40.82 -0.29 9.13 16 37 H 0.07 1.42 7.42 -51.93 -0.39 1.03 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.14 6.35 -51.93 -0.33 0.81 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.86 8.14 -51.94 -0.42 0.44 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 1.31 5.98 -51.93 -0.31 1.00 16 47 H 0.03 0.49 8.14 -51.92 -0.42 0.06 16 48 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 2.17 6.19 -51.92 -0.32 1.85 16 51 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 397.43 15.07 5.99 5.99 Total: -1.00 -30.51 397.43 -9.95 -40.46 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -9.97 Total: 9.84 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.65 Total: 0.64 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.62 Total: -61.18 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.51 -9.95 -40.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089608891.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.346 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.06 seconds