Wall clock time and date at job start Tue Mar 31 2020 18:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.46967 * 2 1 4 4 C 1.35373 * 126.38414 * 85.00287 * 3 2 1 5 5 C 1.41501 * 105.50258 * 179.97438 * 4 3 2 6 6 C 1.47714 * 126.51743 * 179.97438 * 5 4 3 7 7 O 1.21569 * 120.00047 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99773 * 179.71943 * 6 5 4 9 9 C 1.46495 * 119.99797 * 179.97438 * 8 6 5 10 10 C 1.53007 * 109.46965 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.58219 * 299.91585 * 10 9 8 12 12 C 1.53190 * 109.58522 * 179.63900 * 10 9 8 13 13 C 1.53075 * 109.29440 * 185.71719 * 12 10 9 14 14 C 1.53040 * 109.65374 * 61.15738 * 13 12 10 15 15 C 1.52999 * 109.49542 * 178.74948 * 14 13 12 16 16 C 1.52996 * 109.50269 * 58.64838 * 14 13 12 17 17 C 1.53190 * 109.30938 * 298.69343 * 14 13 12 18 18 N 1.46917 * 109.58649 * 60.20693 * 10 9 8 19 19 C 1.36943 * 120.63132 * 353.36999 * 18 10 9 20 20 H 1.07995 * 119.99611 * 31.03102 * 19 18 10 21 21 C 1.38811 * 119.99711 * 211.02606 * 19 18 10 22 22 N 1.31612 * 120.00495 * 14.23938 * 21 19 18 23 23 Si 1.86810 * 119.99464 * 194.23591 * 21 19 18 24 24 H 1.48500 * 109.47258 * 60.00388 * 23 21 19 25 25 H 1.48501 * 109.46866 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46900 * 300.00143 * 23 21 19 27 27 N 1.31813 * 106.96262 * 0.25682 * 5 4 3 28 28 N 1.28472 * 110.07245 * 359.56186 * 27 5 4 29 29 H 0.96993 * 124.87994 * 180.15585 * 28 27 5 30 30 H 1.09000 * 109.47410 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47401 * 299.99709 * 1 2 3 32 32 H 1.08997 * 109.47409 * 59.99911 * 1 2 3 33 33 H 1.08998 * 109.47359 * 239.99832 * 2 1 3 34 34 H 1.09005 * 109.47109 * 120.00077 * 2 1 3 35 35 H 1.07995 * 127.24699 * 359.97438 * 4 3 2 36 36 H 0.97001 * 120.00164 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.47777 * 300.00378 * 9 8 6 38 38 H 1.09000 * 109.46860 * 60.00410 * 9 8 6 39 39 H 1.08998 * 109.50068 * 305.53018 * 12 10 9 40 40 H 1.09007 * 109.49997 * 65.62474 * 12 10 9 41 41 H 1.08987 * 109.34845 * 301.12652 * 13 12 10 42 42 H 1.09004 * 109.43997 * 181.23122 * 13 12 10 43 43 H 1.09004 * 109.47135 * 179.83702 * 15 14 13 44 44 H 1.09008 * 109.46835 * 299.83597 * 15 14 13 45 45 H 1.09003 * 109.47679 * 59.83332 * 15 14 13 46 46 H 1.08997 * 109.47139 * 300.16409 * 16 14 13 47 47 H 1.09007 * 109.46963 * 60.16013 * 16 14 13 48 48 H 1.08999 * 109.47126 * 180.15565 * 16 14 13 49 49 H 1.08997 * 109.59154 * 294.85266 * 17 14 13 50 50 H 1.09009 * 109.70375 * 174.49697 * 17 14 13 51 51 H 0.97004 * 120.00060 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2104 2.2096 1.0857 5 6 2.6931 3.4412 0.5833 6 6 3.0422 4.6376 1.3761 7 8 2.9228 4.6213 2.5858 8 7 3.4979 5.7456 0.7588 9 6 3.8437 6.9324 1.5450 10 6 4.3301 8.0405 0.6087 11 1 5.2106 7.6987 0.0646 12 6 4.6839 9.2860 1.4274 13 6 5.0326 10.4340 0.4767 14 6 3.8237 10.7583 -0.4039 15 6 4.1659 11.9263 -1.3309 16 6 2.6348 11.1388 0.4807 17 6 3.4637 9.5282 -1.2430 18 7 3.2651 8.3837 -0.3434 19 6 2.1095 7.6504 -0.3917 20 1 1.7296 7.1818 0.5040 21 6 1.4266 7.5098 -1.5920 22 7 2.0141 7.8309 -2.7251 23 14 -0.3266 6.8646 -1.5989 24 1 -1.1902 7.7695 -0.7986 25 1 -0.8278 6.8084 -2.9956 26 1 -0.3550 5.5025 -1.0080 27 7 2.7660 3.3199 -0.7272 28 7 2.3892 2.1443 -1.0828 29 1 2.3607 1.8241 -1.9979 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.0235 1.9528 2.1179 36 1 3.5963 5.7575 -0.2062 37 1 2.9642 7.2769 2.0889 38 1 4.6336 6.6817 2.2530 39 1 3.8305 9.5718 2.0422 40 1 5.5384 9.0694 2.0686 41 1 5.8719 10.1391 -0.1529 42 1 5.3059 11.3153 1.0570 43 1 3.3056 12.1551 -1.9600 44 1 4.4221 12.8014 -0.7334 45 1 5.0139 11.6549 -1.9598 46 1 2.3927 10.3066 1.1417 47 1 2.8915 12.0141 1.0776 48 1 1.7733 11.3670 -0.1469 49 1 4.2743 9.3101 -1.9383 50 1 2.5461 9.7188 -1.7998 51 1 1.5369 7.7323 -3.5638 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089608891.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:23 Heat of formation + Delta-G solvation = 23.408855 kcal Electronic energy + Delta-G solvation = -30548.016071 eV Core-core repulsion = 26676.129177 eV Total energy + Delta-G solvation = -3871.886893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -43.66387 -40.71936 -39.76663 -36.61396 -35.24456 -34.95630 -33.72146 -32.76606 -31.73177 -30.32898 -28.92106 -27.99822 -27.30893 -25.77675 -24.67787 -24.16361 -23.49884 -22.02810 -21.69267 -20.75381 -19.45613 -18.61927 -18.44029 -17.54558 -17.27744 -16.72532 -16.71069 -16.05284 -15.66025 -15.34260 -15.28912 -15.19980 -14.99795 -14.74083 -14.69141 -14.50360 -14.21039 -13.89215 -13.75705 -13.33945 -13.12305 -13.02760 -12.83542 -12.73585 -12.52156 -12.51552 -12.48548 -12.25302 -12.11828 -12.06792 -11.87163 -11.67393 -11.63388 -11.25284 -11.18038 -10.91539 -10.84473 -10.48980 -10.43555 -9.95277 -9.80335 -8.49171 -7.80387 -5.24438 0.58906 1.13394 1.36734 1.38132 1.43813 1.94335 2.37241 2.49034 2.51983 3.34986 3.48884 3.62146 3.69230 4.00580 4.03659 4.05964 4.21826 4.33751 4.34774 4.40218 4.46200 4.53646 4.55071 4.66913 4.71297 4.77613 4.80875 4.88745 4.94497 4.97866 5.03978 5.07419 5.11926 5.15535 5.17963 5.18965 5.27697 5.32290 5.39382 5.41666 5.49761 5.55434 5.60305 5.66078 5.73949 5.84002 5.91209 6.14250 6.47683 6.62038 6.94282 7.24048 7.28756 7.93200 8.45781 9.23799 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.003776 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.360011 B = 7413.146212 C = 8474.751700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C 0.033 3.967 4 C -0.202 4.202 5 C -0.035 4.035 6 C 0.589 3.411 7 O -0.583 6.583 8 N -0.681 5.681 9 C 0.137 3.863 10 C 0.160 3.840 11 H 0.027 0.973 12 C -0.123 4.123 13 C -0.091 4.091 14 C -0.092 4.092 15 C -0.128 4.128 16 C -0.117 4.117 17 C 0.196 3.804 18 N -0.594 5.594 19 C -0.225 4.225 20 H 0.055 0.945 21 C -0.025 4.025 22 N -0.921 5.921 23 Si 0.931 3.069 24 H -0.288 1.288 25 H -0.294 1.294 26 H -0.293 1.293 27 N -0.275 5.275 28 N -0.370 5.370 29 H 0.457 0.543 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.166 0.834 36 H 0.414 0.586 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.069 0.931 45 H 0.050 0.950 46 H 0.046 0.954 47 H 0.061 0.939 48 H 0.028 0.972 49 H -0.007 1.007 50 H 0.049 0.951 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.498 -8.734 3.688 10.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 C -0.094 4.094 4 C -0.230 4.230 5 C -0.195 4.195 6 C 0.374 3.626 7 O -0.464 6.464 8 N -0.330 5.330 9 C 0.013 3.987 10 C 0.054 3.946 11 H 0.045 0.955 12 C -0.162 4.162 13 C -0.128 4.128 14 C -0.094 4.094 15 C -0.186 4.186 16 C -0.174 4.174 17 C 0.071 3.929 18 N -0.318 5.318 19 C -0.356 4.356 20 H 0.073 0.927 21 C -0.222 4.222 22 N -0.567 5.567 23 Si 0.762 3.238 24 H -0.214 1.214 25 H -0.220 1.220 26 H -0.220 1.220 27 N -0.111 5.111 28 N -0.086 5.086 29 H 0.304 0.696 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.183 0.817 36 H 0.251 0.749 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.047 0.953 49 H 0.011 0.989 50 H 0.067 0.933 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.667 -8.108 3.437 9.540 hybrid contribution -1.519 -0.735 -0.740 1.842 sum 2.148 -8.844 2.697 9.492 Atomic orbital electron populations 1.21798 0.94002 1.03318 1.01697 1.20294 0.96230 0.85952 1.06065 1.22008 1.03257 0.98105 0.86025 1.21682 1.08325 0.92041 1.00911 1.21985 1.09786 0.97285 0.90405 1.17224 0.77146 0.82113 0.86123 1.90674 1.57235 1.84174 1.14279 1.45963 1.63134 1.11792 1.12106 1.21371 0.99371 0.84361 0.93602 1.20870 0.90635 0.92876 0.90190 0.95546 1.21952 1.01448 0.94983 0.97864 1.21389 0.96348 0.97950 0.97128 1.21147 0.95822 0.95959 0.96428 1.21702 1.00592 0.97377 0.98880 1.21617 0.96680 1.00268 0.98861 1.20588 0.97805 0.84586 0.89938 1.44166 1.15154 1.31189 1.41301 1.19020 0.99209 1.25299 0.92060 0.92703 1.25325 1.00264 1.01095 0.95489 1.70091 1.36074 1.53830 0.96717 0.85910 0.83983 0.78067 0.75800 1.21441 1.21996 1.22009 1.73671 1.18868 1.03592 1.14971 1.43450 1.46605 1.07622 1.10933 0.69569 0.89322 0.93282 0.93613 0.87914 0.87338 0.81657 0.74891 0.93208 0.90533 0.91964 0.90058 0.92866 0.90628 0.94035 0.91192 0.93115 0.93523 0.92049 0.95315 0.98940 0.93304 0.94512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.89 71.98 0.71 -1.40 16 2 C -0.05 -0.63 6.49 29.85 0.19 -0.44 16 3 C 0.03 0.78 6.48 41.40 0.27 1.05 16 4 C -0.20 -6.36 10.73 22.41 0.24 -6.12 16 5 C -0.03 -1.36 7.13 42.46 0.30 -1.06 16 6 C 0.59 25.72 7.82 86.75 0.68 26.40 16 7 O -0.58 -27.24 16.93 -3.93 -0.07 -27.31 16 8 N -0.68 -29.34 3.84 -466.10 -1.79 -31.13 16 9 C 0.14 5.40 4.43 86.38 0.38 5.78 16 10 C 0.16 6.24 3.01 44.98 0.14 6.38 16 11 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 12 C -0.12 -3.87 5.04 30.68 0.15 -3.72 16 13 C -0.09 -2.72 4.70 30.63 0.14 -2.58 16 14 C -0.09 -3.22 0.77 -52.11 -0.04 -3.26 16 15 C -0.13 -3.85 8.48 71.98 0.61 -3.24 16 16 C -0.12 -4.09 7.99 71.98 0.58 -3.52 16 17 C 0.20 8.96 3.95 86.36 0.34 9.30 16 18 N -0.59 -27.59 2.41 -675.24 -1.63 -29.22 16 19 C -0.23 -11.73 6.97 84.03 0.59 -11.14 16 20 H 0.06 3.00 5.85 -2.91 -0.02 2.99 16 21 C -0.03 -1.38 4.96 84.86 0.42 -0.96 16 22 N -0.92 -52.53 11.24 21.65 0.24 -52.29 16 23 Si 0.93 46.54 29.58 68.60 2.03 48.57 16 24 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 25 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 26 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 27 N -0.27 -10.23 11.92 -48.17 -0.57 -10.80 16 28 N -0.37 -9.92 6.83 -47.93 -0.33 -10.25 16 29 H 0.46 8.61 8.96 -220.00 -1.97 6.64 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.17 4.78 8.06 -2.91 -0.02 4.76 16 36 H 0.41 19.24 7.11 -92.71 -0.66 18.58 16 37 H 0.05 2.14 7.42 -2.39 -0.02 2.12 16 38 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.06 2.03 6.35 -2.39 -0.02 2.02 16 40 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 45 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.05 1.80 5.98 -2.39 -0.01 1.79 16 47 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 48 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 49 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 50 H 0.05 2.58 6.19 -2.38 -0.01 2.57 16 51 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -69.60 397.43 1.90 -67.70 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -1.69 Total: 33.26 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 5.71 Total: 11.47 kcal Atomic # 7 Polarization: -129.61 SS G_CDS: -4.07 Total: -133.69 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.07 Total: -27.31 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -69.60 1.90 -67.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089608891.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.109 kcal (2) G-P(sol) polarization free energy of solvation -69.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds